ID EU487042; SV 1; circular; genomic DNA; STD; VRL; 2723 BP. XX AC EU487042; XX DT 11-MAR-2008 (Rel. 95, Created) DT 01-MAY-2011 (Rel. 108, Last updated, Version 2) XX DE Tomato leaf curl Cebu virus isolate P134, complete genome. XX KW . XX OS Tomato leaf curl Cebu virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2723 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M.U., Green S.K., Kenyon L., RA Jan F.J.; RT "Distribution and genetic diversity of begomoviruses infecting tomato and RT pepper plants in the Philippines"; RL Ann. Appl. Biol. 158(3):275-287(2011). XX RN [2] RP 1-2723 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT "Molecular identification of Solanaceae- and Cucurbitaceae-infecting RT Begomoviruses in the Philippines"; RL Unpublished. XX RN [3] RP 1-2723 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT ; RL Submitted (13-FEB-2008) to the INSDC. RL Virology Unit, AVRDC-the World Vegetable Center, P.O. Box 42, Shanhua, RL Taina, Taiwan 74199, Republic of China XX DR MD5; e92fcb194e5e210d662dd249ee905292. XX FH Key Location/Qualifiers FH FT source 1..2723 FT /organism="Tomato leaf curl Cebu virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="P134" FT /mol_type="genomic DNA" FT /country="Philippines:Cebu" FT /isolation_source="plant with leaf curling symptom" FT /db_xref="taxon:507474" FT misc_feature join(2578..2723,1..104) FT /note="intergenic region" FT gene 105..449 FT /gene="V2" FT CDS 105..449 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:B1PRF6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B1PRF6" FT /protein_id="ACA61088.1" FT /translation="MWDPLVHPFPESLHGFRCMLAIKYLQSLQGKYSPDTVGHEFLKDF FT ICILRSRNYAEAFNRYSDVVANVYNTTETQLRESVQSPCLCPHCPRHVLQAKVVDLQAH FT VSQAQDVQNV" FT gene 265..1041 FT /gene="V1" FT CDS 265..1041 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:B1PRF7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B1PRF7" FT /protein_id="ACA61089.1" FT /translation="MPKRSIDTVTSLPMSITRRRLNYGSQFSLPASVPTVPDMSYKRRS FT WTYRPMYRKPKMYRMYRSRDVPRGCEGPCKVQSYEQRHDIVHVGKVICVSDVTRGNGLT FT HRVGKRFCVKSVYVLGKVWMDENIKTKNHTNTVMFFLVRDRRPYGSPQDFGQVFNMYDN FT EPSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVKKFMKINNHVTYNHQEAAKYD FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1038..1442) FT /gene="C3" FT CDS complement(1038..1442) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:B1PRF8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B1PRF8" FT /protein_id="ACA61092.1" FT /translation="MDSRTGELITAAQAENGVYTWMITNPLYFKISQHDKRPFLRNHDI FT ITVQIQFNHNLRKALGIHQCFLICKIWTRLRPQTWRFLRVFKYHCMKYLDSLGVISINN FT VIRAFDYVLYDVLEKTIDVQISHIIKFNIY" FT gene complement(1183..1590) FT /gene="C2" FT CDS complement(1183..1590) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:B1PRF9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B1PRF9" FT /protein_id="ACA61091.1" FT /translation="MQNSSPSHNHCTQVPIKVQHKIAKKRPIRRRRIDLPCGCSYYLGL FT NCASYGFSHRGTHHCSSGREWRIYLDDNKSPLFQDIPTRQEAVPEEPRHHNGTNTVQPQ FT PEESVGNTSMFSDLQNLDSFTSSDLAFLKSI" FT gene complement(1490..2578) FT /gene="C1" FT CDS complement(1490..2578) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:B1PRG0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B1PRG0" FT /protein_id="ACA61090.1" FT /translation="MAPPRKFQINAKNYFLTYPKCSLTKEETLTQLQNLETPTNKKFIK FT ICRELHEDGSPHLHVLIQFEGKYRCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTVEWGEFQVDGRSARGGQQTANDAYAKAINTGSKSEALNVIRELAPKDYILQFH FT NLNANLDRIFAPPLEVFVCPFLPSSFDQVPKELEEWVSENVRDAAARPWRPISIVIEGN FT SRTGKTMWARSLGQHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNRELKNWALKNAEFITITQPL FT YSSSHQSPTQNSQEETDTQAEN" FT gene 2131..2421 FT /gene="C4" FT CDS complement(2131..2421) FT /codon_start=1 FT /gene="C1" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B1PRG1" FT /protein_id="ACA61093.1" FT /translation="MGALISMCSSSSRGNTDARINDSSIWYPQPDQHISIQTFRELNQA FT PTSNPILIKTETPSNGVSFRSTEDLLEGVNKQPMMLTPKQLTQEVSRRLLM" XX SQ Sequence 2723 BP; 727 A; 520 C; 594 G; 882 T; 0 other; accgtgggac gcgccttttt tttaaccaat catattggac cttgacagct atttaaagtg 60 cattctgcac cataaaagag ttttctttat aggtaatggc gaacatgtgg gatcctctag 120 ttcatccttt ccctgaaagc ttgcacggct ttagatgtat gcttgccatc aaatatcttc 180 aaagcttaca gggcaaatat tctccggata ctgttgggca tgagtttttg aaagatttta 240 tatgtatttt gcgtagtagg aattatgccg aagcgttcaa tagatacagt gacgtcgttg 300 ccaatgtcta taacacgacg gagactcaat tacgggagtc agttcagtct ccctgcctct 360 gtccccactg tcccagacat gtcttacaag cgaaggtcgt ggacttacag gcccatgtat 420 cgcaagccca agatgtacag aatgtataga agccgtgatg ttcctcgtgg gtgtgaaggc 480 ccgtgtaagg ttcagtccta tgagcagcgc catgatatag ttcatgtggg taaggtcata 540 tgtgtttctg acgtcactcg tggtaacggg cttacacatc gtgttggaaa gaggttttgt 600 gtaaagtctg tgtatgtgtt ggggaaggtc tggatggatg agaacatcaa gactaaaaat 660 cacactaaca ctgtcatgtt ttttttagtg cgtgatagga ggccatatgg gtctccccag 720 gattttggtc aggtttttaa catgtatgat aatgagccta gtactgccac tgtaaaaaat 780 gataatagag atcgattcca agttcttcgt agatttcaag ctactgtaac gggaggtcag 840 tatgcaagca aggagcaagc aatagttaag aagttcatga agattaacaa ccatgtcact 900 tacaatcatc aggaggctgc gaagtacgat aaccacacag aaaatgcttt gttgttatat 960 atggcatgta ctcatgctag taatccagtg tatgctacgt tgaagatcag aatctatttc 1020 tatgattctg ttcaaaatta ataaatattg aattttatta tatgagaaat ttgtacatcg 1080 attgtttttt caagtacatc gtatagtaca tagtcgaatg ccctaattac attgtttatg 1140 ctaataactc ctaaactatc taaatatttc atacaatgat atttaaatac tcttaagaaa 1200 cgccaagtct gaggacgtaa acgagtccag attttgcaga tcagaaaaca ttgatgtatt 1260 cccaacgctt tcctcaggtt gtggttgaac tgtatttgta ccgttatgat gtcgtggttc 1320 ctcaggaacg gcctcttgtc gtgttgggat atcttgaaat agaggggatt tgttatcatc 1380 caggtatata cgccattctc tgcctgagct gcagtgatga gttcccctgt gcgagaatcc 1440 atatgacgca caattaagtc ctaaatagta agagcagccg cacggaagat caattctccg 1500 cctgcgtatc ggtctcttct tggctatttt gtgttggact ttgatgggaa cttgagtaca 1560 atggttgtgt gatggtgatg aattctgcat tttttagtgc ccaatttttg agttccctat 1620 ttttgtcctc atccaagtac tctttatacg atgatgtagg accaggattg cagaggaaga 1680 tagtgggtat tccaccttta atttgaattg gtttcccgta cttcgtgttg ctttgccagt 1740 ctctttgggc ccccatgaac tctttaaaat gctttagata atgcggatca acgtcatcaa 1800 tgacgttata ccaagcatca ttgctgtaaa cctttgggct taggtccaaa tgtccgcata 1860 gataattgtg ttggcccaga gatctagccc acatcgtctt tcctgttcta ctattgcctt 1920 ctattacaat acttatgggc ctccaaggcc gcgcagcggc atccctgaca ttctcggaaa 1980 cccattcttc aagttctttt ggaacttgat cgaaagaaga aggaagaaaa ggacaaacaa 2040 aaacctctaa aggaggtgca aaaattctat ctaaattcgc atttaaattg tgaaattgta 2100 aaatataatc tttaggggct aattctctaa ttacattaag agcctccgac ttacttcctg 2160 tgttaattgc tttggcgtaa gcatcattgg ctgtttgttg accccctcta gcagatcttc 2220 cgtcgacctg aaactcaccc cattcgacgg tgtctccgtc tttatcaata taggatttga 2280 cgtcggagct tgatttagct ccctgaatgt ttggatggaa atgtgctgat ctggttgggg 2340 ataccaaatc gaagaatcgt tgattcgtgc atctgtattt cccctcgaac tggatgagca 2400 catggagatg agggctccca tcttcgtgca gttctctgca gatcttgatg aattttttat 2460 ttgttggtgt ttctaggttt tgtaattggg taagggtttc ctctttagta agagagcatt 2520 tgggatatgt aagaaaataa tttttggcat ttatttggaa ttttctggga ggtgccattt 2580 gacttagtca atgggtacca attgagagga tttcattcta ctcagggtat cggtacattg 2640 gtacctatat atacttggtt acctaaaggg cattactgta aattttttca ggtttcacac 2700 gcgtcccacg tatagttaat att 2723 //