Dbfetch
ID EU487033; SV 1; circular; genomic DNA; STD; VRL; 2747 BP. XX AC EU487033; XX DT 11-MAR-2008 (Rel. 95, Created) DT 01-MAY-2011 (Rel. 108, Last updated, Version 2) XX DE Squash leaf curl Philippines virus isolate P88, complete genome. XX KW . XX OS Squash leaf curl Philippines virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2747 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M.U., Green S.K., Kenyon L., RA Jan F.J.; RT "Distribution and genetic diversity of begomoviruses infecting tomato and RT pepper plants in the Philippines"; RL Ann. Appl. Biol. 158(3):275-287(2011). XX RN [2] RP 1-2747 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT "Molecular identification of Solanaceae- and Cucurbitaceae-infecting RT Begomoviruses in the Philippines"; RL Unpublished. XX RN [3] RP 1-2747 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT ; RL Submitted (13-FEB-2008) to the INSDC. RL Virology Unit, AVRDC-the World Vegetable Center, P.O. Box 42, Shanhua, RL Taina, Taiwan 74199, Republic of China XX DR MD5; 9c2fdbf9a80360ca5eb90642d9c725ff. XX FH Key Location/Qualifiers FH FT source 1..2747 FT /organism="Squash leaf curl Philippines virus" FT /segment="DNA-A" FT /host="squash" FT /isolate="P88" FT /mol_type="genomic DNA" FT /country="Philippines:Laguna" FT /isolation_source="plant with mosaic symptom" FT /db_xref="taxon:269277" FT misc_feature join(2584..2747,1..118) FT /note="intergenic region" FT gene 119..457 FT /gene="V2" FT CDS 119..457 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:B1PRA2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B1PRA2" FT /protein_id="ACA61034.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEVEKTYSPDTVGYDLVRDL FT ILVLRAKNYVEATSRYYHFNSRVEGTPTSQLRQPLCFPCSCPHCPRHKGKGLDKQADEQ FT KTQDVQNV" FT gene 279..1049 FT /gene="V1" FT CDS 279..1049 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:B1PRA3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B1PRA3" FT /protein_id="ACA61035.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAVVPIARVTKGKAWT FT NRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVIFFLVRDRRPTGTPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNSYIVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1046..1456) FT /gene="C3" FT CDS complement(1046..1456) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:B1PRA4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B1PRA4" FT /protein_id="ACA61038.1" FT /translation="MITDSRTGEYITADRAESGVYIWDVPNPLYFKIMKHDIRPCLEDH FT DIIKVHIMFNHNLRKALGLHKCVLMFQIWTGLRPPTGIFLRVFKTQVLKYLEMLGVIGI FT NNVIRAVYHVLDNVLENTIDVWTTYDVKLNIY" FT gene complement(1191..1595) FT /gene="C2" FT CDS complement(1191..1595) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:B1PRA5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B1PRA5" FT /protein_id="ACA61037.1" FT /translation="MQSSSHSKDHSIPVAKKSLPQKRKKNIRRRRIDLPCGCSYYMSIN FT CHDHGFTHRGVHHCGSSREWRVYLGRSKSPLFQNNETRHQTLPGRPRHNQSAHHVQPQP FT AESTGASQMCSNVPDMDGLTPADWDFLESL" FT gene complement(1498..2583) FT /gene="C1" FT CDS complement(1498..2583) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:B1PRA6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B1PRA6" FT /protein_id="ACA61036.1" FT /translation="MPQPRRFRISAKNYFVTYPKCSLTKEEALSQLQTLETPTSKKFIK FT ICRELHEDGSPHLHVLIQFEGKFVCTNNRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYI FT NKGGDTLEWGEFQVDGRSARGGQQSANDTAAKALNSGSTEAALAIIREELPKEFIFQYH FT NIKSNLDRIFAPPLEVYVSPFSISSFDQVPQELVDWVSGNVVCSAARPIRPIGIVLEGD FT SRTGKTAWARSLGPHNYLCGHLDLSPRVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNPGPNSSYKEYLDEDKNAALKQWALKNAIFITLEGPL FT YSGREKIATAEEEEEHQAQTN" FT gene complement(2169..2426) FT /gene="C4" FT CDS complement(2169..2426) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B1PRA7" FT /protein_id="ACA61039.1" FT /translation="MGALISTFLSSSRGSSCAQITDSSTWCPQVGQHISIRTFRELNPA FT PMSSPISTRVETPLNGENSRSTAEVLEAVSSLLTTLPQRH" XX SQ Sequence 2747 BP; 733 A; 592 C; 623 G; 799 T; 0 other; accggatggc cgcgcttttt tttatgtggg ccctcgacca atgaaattca cgctacatgg 60 cttatttatt gcgcggggac cattaaatag acttccgcac caagttttga tccacaacat 120 gtgggatcca ctgttgcacg aattccctga aagtgttcat ggtctaaggt gcatgctagc 180 tgtgaaatat cttcaggagg tggaaaagac atattcgccg gacacagtcg gctacgatct 240 tgttcgcgat ctcattcttg ttctccgcgc aaagaactat gtcgaagcga ccagccgata 300 ttatcatttc aactcccgcg tcgaaggtac gccgacgtct caacttcgac agcccctatg 360 tttcccgtgc agttgtcccc attgcccgcg tcacaaaggg aaaggcctgg acaaacaggc 420 cgatgaacag aaaacccaag atgtacagaa tgtatagaag tcccgacgtg ccaaggggct 480 gtgaaggccc ttgtaaagtt caatcgttcg aatctaggca cgatgtctct catattggga 540 aggtaatgtg tatcagcgat gtcacacgag gaaccggact cacacatcgc gttggaaagc 600 gattttgtgt gaaatctgtt tatgttttgg gaaagatatg gatggatgaa aacatcaaga 660 ctaaaaatca cactaatagt gtcatatttt ttttggttcg agaccgtcgt cctacaggga 720 ctcctcagga ttttggggag gtttttaata tgtttgacaa tgaaccgagc actgcaacgg 780 tgaagaatat gcatcgtgat cgataccaag tgctgcgcaa atggcatgcc actgtgacgg 840 gaggaacata cgcatcaagg gagcaagcat tagttaggaa gtttgttaga gttaatagtt 900 atattgtcta caaccaacaa gaggccggca agtatgagaa tcatactgaa aatgcattaa 960 tgttgtatat ggcctgtact catgcatcga accctgtata cgcgactttg aaaatccgga 1020 tctattttta tgattcggta acaaattaat atatattcaa tttcacatca tacgttgtcc 1080 atacatcaat tgtgttctcc aacacattgt ccagtacatg ataaacggct cttattacat 1140 tgttaatacc aatcacccct aacatttcca agtacttaag gacttgggtt ttaaagactc 1200 tcaagaaaat cccagtcggc gggcgtaagc ccgtccatat ctggaacatt agaacacatt 1260 tgtgaagccc cagtgctttc cgcaggttgt ggttgaacat gatgtgcact ttgattatgt 1320 cgtggtcttc caggcaaggt ctgatgtcgt gtttcattat tttgaaatag aggggatttg 1380 gaacgtccca gatatacacg ccactctctg ctcgatccgc agtgatgtac tcccctgtgc 1440 gtgaatccgt gatcatggca gtttattgac atgtagtacg agcatccgca cggtagatca 1500 attcgtctgc gcctgatgtt cttcttcctc ttctgcggta gcgatttttt cgcgaccgga 1560 atagagtggt ccttcgagtg tgatgaagat tgcattcttt aatgcccact gttttagtgc 1620 tgcattctta tcttcatcga gatattcttt ataactgcta tttggtcccg gattgcagag 1680 gaagatggtg ggaattccac ctttaatcat gactggcttt ccgtatttcg tgttgctttg 1740 ccagtctctt tgggccccca tgaattcttt aaaatgcttt agatagtggg gatctacgtc 1800 atcaatgacg ttgtaccagg catcattatt gtacactctc gggcttagat ccagatggcc 1860 gcacaagtaa ttgtgcggtc ccaaagaacg cgcccacgca gttttacccg ttctactatc 1920 accctctaga actattccta tgggtctaat cggccgcgca gcggaacaca ccacgttacc 1980 tgaaacccaa tcgacgagtt cttgcggaac ttgatcgaag gatgaaatcg aaaaaggaga 2040 aacatacacc tctaaaggag gtgcaaaaat cctatctaaa ttacttttaa tattatggta 2100 ttgaaaaata aactcttttg ggagttcttc tctaattatt gctaaagctg cttcggttga 2160 acctgaattt aatgcctttg cggcagtgtc gttagcagac tgctgaccgc ctctagcact 2220 tctgccgtcg acctggaatt ctccccattc aagggtgtct ccacccttgt tgatatagga 2280 cttgacatcg gagctggatt tagctccctg aatgttcgga tggaaatgtg ctgaccgact 2340 tggggacacc aagtcgaaga atctgttatt tgtgcacacg aacttcccct cgaactggat 2400 aagaacgtgg agatgagggc tcccatcttc gtgaagctct ctgcagattt tgataaattt 2460 cttcgaagtc ggagtttcta gggtttgtaa ttgggaaagt gcctcttctt tggtaagaga 2520 gcacttggga taagtgacga agtaattctt cgcagaaatt ctaaaacgac gtggttgagg 2580 cattataatt gtcgtttcgg tttggtgaca accaaacttg cgaaatgaat ggtgacaggt 2640 gcacaatata tagggtgtct ctaaatggca gaatggtaat tattccaata attactttaa 2700 ttcaaaattc aaattggaat tggtaaagcg gccatccgta taatatt 2747 //