ID EU487031; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC EU487031; XX DT 11-MAR-2008 (Rel. 95, Created) DT 01-MAY-2011 (Rel. 108, Last updated, Version 2) XX DE Squash leaf curl China virus isolate P54, complete genome. XX KW . XX OS Squash leaf curl China virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M.U., Green S.K., Kenyon L., RA Jan F.J.; RT "Distribution and genetic diversity of begomoviruses infecting tomato and RT pepper plants in the Philippines"; RL Ann. Appl. Biol. 158(3):275-287(2011). XX RN [2] RP 1-2739 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT "Molecular identification of Solanaceae- and Cucurbitaceae-infecting RT Begomoviruses in the Philippines"; RL Unpublished. XX RN [3] RP 1-2739 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT ; RL Submitted (13-FEB-2008) to the INSDC. RL Virology Unit, AVRDC-the World Vegetable Center, P.O. Box 42, Shanhua, RL Taina, Taiwan 74199, Republic of China XX DR MD5; f8b4b2865d7b2a27b981ede3e43d8f3b. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Squash leaf curl China virus" FT /segment="DNA-A" FT /host="chayote" FT /isolate="P54" FT /mol_type="genomic DNA" FT /country="Philippines:Benguet" FT /isolation_source="plant with mosaic symptom" FT /db_xref="taxon:223323" FT misc_feature join(2587..2739,1..118) FT /note="intergenic region" FT gene 119..457 FT /gene="V2" FT CDS 119..457 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:B1PR90" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B1PR90" FT /protein_id="ACA61022.1" FT /translation="MWDPLMHEFPESVHGLRCMLAVKYLQEVEKTYSPDTVGYDLVRDL FT ILVLRAKNYVEATSRYYHFNSRVEGTPTSQLRQPLCFPCSCPHCPRHKGKGLDKQADEQ FT KTQDVQDV" FT gene 279..1049 FT /gene="V1" FT CDS 279..1049 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:B1PR91" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B1PR91" FT /protein_id="ACA61023.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAVVPIARVTKGKAWT FT NRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVLFFFVRDRRPTGTPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNSYIVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1046..1459) FT /gene="C3" FT CDS complement(1046..1459) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:B1PR92" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B1PR92" FT /protein_id="ACA61026.1" FT /translation="MITDSRTGEYITADRAESGVYIWEVPNPLYFKIMKHDIRPCLEEH FT DIIKVHIMFNHNLRKALRLHKCVLMFQIWTGLRPPIGRSFLRVFKTQVLKYLEMLGVIS FT IYNVIRAVYHVLDNVLEKTIDVWTTYDVKLNIY" FT gene complement(1191..1598) FT /gene="C2" FT CDS complement(1191..1598) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:B1PR93" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B1PR93" FT /protein_id="ACA61025.1" FT /translation="MQPSSPSKNHSIPVAKESLPQKKKKIIRRRRIDLTCGCSYYMSIN FT CHDHGFTHRGVHHCGSSREWRVYLGSSKSPLFQNNEARHQTLLRRTRHNQSAHHVQPQP FT AESTAASQMCSNVPNLDGLTPADWEEFFESL" FT gene complement(1501..2586) FT /gene="C1" FT CDS complement(1501..2586) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:B1PR94" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B1PR94" FT /protein_id="ACA61024.1" FT /translation="MAAPRPFKLSAKNYFLTYPRCSITKEDALSQLKILDTPTSKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKQYI FT DRDGDVLEWGVFQIDGRSARGGQQTANDAYAKALNTGTKEDALKVLKELAPKDYVLQFH FT NMNSNLDRIFPPRAEVYVSPFSITSFDRVPQELVDWVSGNVVCAAARPIRPIGIVLEGD FT SRTGKTAWARSLGPHNYLCGHLDLSPRVYSNDSWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEDTNAALRQWALKNATFITLKEPL FT YSGRERIATAEEEEDHQAQTN" FT gene complement(2253..2429) FT /gene="C4" FT CDS complement(2253..2429) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B1PR95" FT /protein_id="ACA61027.1" FT /translation="MGLRISTFLSSSKESSNARITDSSTWCPQVGQHISIRTFRELNRH FT RTSNNTSTETVTC" XX SQ Sequence 2739 BP; 734 A; 592 C; 598 G; 814 T; 1 other; accgaatggc cgcgcttttt ttttggtggg ccctcaacca ttgaaattca cgccccatgg 60 cttaattatt gcatggggac cattaaatag acttccgcac caagttatga tccacaacat 120 gtgggatcca cttatgcacg aattccctga aagtgttcat ggtctaaggt gcatgctagc 180 ggtgaaatat cttcaggagg tggaaaagac atattcgccg gacacagtcg gctacgatct 240 tgttcgcgat cttattctag ttctccgcgc aaagaactat gtcgaagcga ccagccgata 300 ttatcatttc aactcccgcg tcgaaggtac gccgacgtct caacttcgac agcccctatg 360 tttcccgtgc agttgtcccc attgcccgcg tcacaaaggg aaaggcctgg acaaacaggc 420 cgatgaacag aaaacccaag atgtacagga tgtatagaag tcccgacgtg ccaaggggct 480 gtgaaggccc ttgtaaagtt caatcgtttg aatctaggca cgatgtctct catattggga 540 aggtaatgtg tatcagcgat gttacacgag gaaccggact cacacatcgc gttggcaagc 600 gattttgtgt gaaatctgtt tatgttttgg gaaagatatg gatggatgaa aatatcaaga 660 ctaaaaatca cactaatagt gtcttatttt tttttgttcg agaccgtcgt cctacaggga 720 ctcctcagga ttttggcgag gtttttaata tgttcgacaa tgaaccgagc actgcaacgg 780 tgaagaacat gcatcgtgat cgataccaag tgctgcgcaa atggcatgcc actgtgactg 840 gaggaacata cgcatcaagg gagcaagcat tagttaggaa gtttgttaga gtcaatagtt 900 atattgtcta caaccaacaa gaggccggca agtatgagaa tcatactgaa aatgcattaa 960 tgttgtatat ggcctgtact catgcatcga atcctgtata tgcgactttg aaaattcgga 1020 tctattttta tgattcggta acaaattaat atatattcaa tttcacatca tatgttgtcc 1080 atacatcaat tgtcttttcc aatacattgt ccaraacatg ataaacggct cttattacat 1140 tgtaaatact aatcacccct aacatttcca agtacttaag gacttgggtt ttaaagactc 1200 tcaaaaaact cctcccaatc ggcgggcgta agcccgtcca gatttggaac attagaacac 1260 atttgtgaag ccgcagtgct ttccgcaggt tgtggttgaa catgatgtgc actttgatta 1320 tgtcgtgttc ttctaagcaa ggtctgatgt cgtgcttcat tattttgaaa tagaggggat 1380 ttggaacttc ccagatatac acgccactct ctgctcgatc cgcagtgatg tactcccctg 1440 tgcgtgaatc cgtgatcatg gcaatttatt gacatgtaat acgagcatcc gcacgtaaga 1500 tcaattcgtc tgcgcctgat gatcttcttc ttcttctgcg gtagcgattc tttcgcgacc 1560 ggaatagagt ggttctttga gggtgatgaa ggttgcattc tttaatgccc actgtctaag 1620 tgctgcattt gtatcttcat cgagatattc tttataactg ctgttcggtc ctttattgca 1680 gaggaaaatg gttggaattc cacctttaat catgacaggt tttccgtact tcgtgttact 1740 ttgccagtct ctttgggccc ccatgaattc tttaaaatgc tttagatagt gggggtcgac 1800 gtcatcaatg acgttatacc aagaatcatt actgtacact cttgggctta gatccaggtg 1860 gccgcacaag taattgtgtg gtcccaatga ccgcgcccac gctgttttac ccgttctact 1920 atcaccctct aaaactattc ctatgggtct aatcggccgc gcagcggcac acaccacgtt 1980 acctgaaacc caatcgacga gttcttgcgg aactctgtcg aaggatgtaa tagaaaaagg 2040 agaaacatac acctcagccc gaggtggaaa aattcgatct aaattggaat tcatattatg 2100 aaattgcaaa acataatcct ttggtgctaa ttctttcaac actttcaaag catcctcttt 2160 agttcctgta ttgagtgcct ttgcgtaagc gtcgtttgct gtttgttgac ctccacgagc 2220 agatcgtcca tcgatctgga agacacccca ttctaacacg tcaccgtctc tgtcgatgta 2280 ttgtttgacg tccgatgccg atttagctcc ctgaatgttc ggatggaaat gtgctgaccg 2340 acttggggac accaagtcga agaatctgtt attcttgcat tggaactttc cttcgaactg 2400 gataagaacg tggatatgcg gagacccatc ttcgtgcaac tctctacaaa ttttgataaa 2460 tttcttcgaa gttggagtgt ctaggatttt taattgggaa agtgcatctt ctttggtgat 2520 agagcaccta ggatatgtga ggaaatagtt tttcgcactt aatttgaaag gtctaggagc 2580 agccatcaaa acgctcgttt tgaatcggtg tcccttcaaa actatggtgt attggggtac 2640 tggggtctta taaatacttt ggaccccaaa tggcacaatg gtaattttgc tgacaattac 2700 tttaattcaa aatgaaaaag cggccattcg tataatatt 2739 //