Dbfetch
ID EU487026; SV 1; circular; genomic DNA; STD; VRL; 2754 BP. XX AC EU487026; XX DT 11-MAR-2008 (Rel. 95, Created) DT 01-MAY-2011 (Rel. 108, Last updated, Version 2) XX DE Tomato leaf curl Philippines virus isolate P2, complete genome. XX KW . XX OS Tomato leaf curl Philippines virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2754 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M.U., Green S.K., Kenyon L., RA Jan F.J.; RT "Distribution and genetic diversity of begomoviruses infecting tomato and RT pepper plants in the Philippines"; RL Ann. Appl. Biol. 158(3):275-287(2011). XX RN [2] RP 1-2754 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT "Molecular identification of Solanaceae- and Cucurbitaceae-infecting RT Begomoviruses in the Philippines"; RL Unpublished. XX RN [3] RP 1-2754 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT ; RL Submitted (13-FEB-2008) to the INSDC. RL Virology Unit, AVRDC-the World Vegetable Center, P.O. Box 42, Shanhua, RL Taina, Taiwan 74199, Republic of China XX DR MD5; f565a12318cc395dd0bf30a7bc891997. XX FH Key Location/Qualifiers FH FT source 1..2754 FT /organism="Tomato leaf curl Philippines virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="P2" FT /mol_type="genomic DNA" FT /country="Philippines:Nueva Ecija" FT /isolation_source="plant with leaf curling symptom" FT /db_xref="taxon:96054" FT misc_feature join(2613..2754,1..141) FT /note="intergenic region" FT gene 142..486 FT /gene="V2" FT CDS 142..486 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:B1PR60" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B1PR60" FT /protein_id="ACA60992.1" FT /translation="MWDPLVHPFPESLHGFRCMLAIKYLQSLQNKYSPDTVGHEFLKDF FT ICILRSKNYAEAFNRYSNVVANVYNTSEAQLRESVQSPCLCPHCPRHVLQAKVMDLQAH FT VSQAQNIQNV" FT gene 302..1078 FT /gene="V1" FT CDS 302..1078 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:B1PR61" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B1PR61" FT /protein_id="ACA60993.1" FT /translation="MPKRSIDTVTSLPMSITRRRLNYGSQYSLPASVPTVPDMSYKRRS FT WTYRPMFRKPKIYRMYRSRDVPRGCEGPCKVQSYEQRHDIAHVGKVICVSDVTRGNGLT FT HRVGKRFCVKSVYVLGKVWMDENIKTKNHTNTVMFFLVRDRRPYGTPQDFGQVFNMYDN FT EPSTATVKNDNRDRYQVLRKFQATVTGGQYASKEQAIVKRFMKINNHVTYNHQEAAKYD FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1075..1476) FT /gene="C3" FT CDS complement(1075..1476) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:B1PR62" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B1PR62" FT /protein_id="ACA60996.1" FT /translation="MDSRTGEPITAAQAENGVYTWTITNPLYFKISQHDKMPFLKNHDI FT ITVQIQFNHNLRKALGIHQCFLICKIWTRLHPQTWHFLRVFKYQCMKYLYSLGVISINN FT VIRAVDHVMYNVIQTIDVQFSHIIKFNIY" FT gene complement(1217..1624) FT /gene="C2" FT CDS complement(1217..1624) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:Q8B6R2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q8B6R2" FT /protein_id="ACA60995.1" FT /translation="MQNSSPSRGHSTQVPIKVQHKIAKRRPIRRRRIDLPCGCSYYLGL FT NCASYGFSHRGTHHCSSGREWRIYLDDNKSPLFQDIPTRQDAVLEKPRYHNSTNTVQPQ FT PEESVGNTSMFSDLQNLDSFTSSDLAFLKSI" FT gene complement(1524..2612) FT /gene="C1" FT CDS complement(1524..2612) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:B1PR64" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B1PR64" FT /protein_id="ACA60994.1" FT /translation="MAPPRKFQINAKNYFLTYPKCCLTKEETLAQIKTLDTVTNKKFIK FT ICRELHEDGSPHLHVLIQFEGKYRCTNKRFFDLVSPTRSAHYHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQSANDAYAKAINTGSKSEALNVIRELAPKDFVLQFH FT NLNANLDRIFAPPLEVFRCPFLSSSFDQVPKELEDWVSENVRDAAARPWRPISIVIEGG FT SRTGKTMWARSMGPHNYLCGHLDLSPKVYSNDAWYNVIDDVXPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSPLKDWALKNAEFITLTRPL FT YSGTHQSPAQNSQEETNTQAEN" FT gene complement(2165..2455) FT /gene="C4" FT CDS complement(2165..2455) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B1PR65" FT /protein_id="ACA60997.1" FT /translation="MGALISMCSSSSKGNTDARIRDSSIWYPQPGQHITIQTYRELNQA FT PTSNHILIRTETPSNGVSFRSMEDLLEGVNNQPMMLTPKQLTQEVSRRLLM" XX SQ Sequence 2754 BP; 738 A; 549 C; 595 G; 871 T; 1 other; accgtgggcc gcgcaaattt ttttttattt gggcctaatg ggcctgttgg aagtcggccg 60 cgaccaatgg aaacgctccc tcatcgctta acaaccatgt tgtcctctat ttagttctgc 120 tacctcaatt ttgtactaag aatgtgggat cctctggtac atccatttcc tgaaagctta 180 cacggcttca gatgtatgct tgccatcaaa tatcttcaga gcttacagaa taaatattct 240 ccggacactg ttgggcatga gtttttgaaa gattttatct gcattttgcg aagtaagaat 300 tatgccgaag cgttcaatag atacagtaac gtcgttgcca atgtctataa cacgtcggag 360 gctcaattac gggagtcagt acagtctccc tgcctctgtc cccactgtcc cagacatgtc 420 ttacaagcga aggtcatgga cttacaggcc catgtttcgc aagcccaaaa tatacagaat 480 gtatagaagc cgtgatgttc ctcgtgggtg tgaaggccca tgtaaggttc agtcttatga 540 acagcgtcat gatatagccc atgtgggtaa ggtcatatgt gtttctgatg tcactcgtgg 600 taatgggctc acacatcgtg tgggaaagag gttttgtgta aagtctgtgt atgtgttggg 660 gaaggtctgg atggatgaga acatcaagac taagaatcac acaaacactg tcatgttttt 720 tttagttcgt gataggagac cctatgggac tccccaggat tttggtcagg tttttaacat 780 gtatgataat gagcctagta ctgcaacagt aaaaaatgat aatagagatc gataccaagt 840 tcttcgtaaa tttcaagcta cagtgactgg aggtcagtat gcaagcaagg agcaagcaat 900 agtcaagagg ttcatgaaga ttaacaacca tgttacttac aatcatcaag aggctgcgaa 960 gtacgataac catacagaga acgctttact gttgtatatg gcatgtactc atgccagtaa 1020 tccagtgtat gctactttga aaatcagaat ctatttctat gattctgttc aaaattaata 1080 aatattgaat tttattatat gagaaaattg tacatctatt gtttgaatta cattgtacat 1140 cacatgatcg actgctctaa ttacattgtt tatgctgata acccctaaac tatacaaata 1200 cttcatacac tgatatttaa atactcttaa gaaatgccaa gtctgaggat gtaaacgagt 1260 ccagattttg cagatcagaa aacattgatg tattcccaac gctttcctca ggttgtggtt 1320 gaactgtatt tgtactgtta tgatatcgtg gtttttcaag aacggcatct tgtcgtgttg 1380 ggatatcttg aaataaaggg gatttgttat cgtccaggta tatacgccat tctctgcctg 1440 agctgcagtg atgggttccc ctgtgcgaga atccatatga agcgcaatta agtcctagat 1500 agtaagagca gccgcaagga agatcaattc tccgcctgcg tattggtctc ctcttggcta 1560 ttttgtgctg gactttgatg ggtacctgag tagagtggcc tcgtgagggt gatgaattct 1620 gcatttttta gtgcccagtc tttgagtgga gaatttttat cctcatccaa gtactcttta 1680 tacgacgatg taggtcctgg attgcatagg aagattgttg ggatcccacc tttaatttga 1740 attggtttcc cgtactttgt gttgctttgc cagtcccttt gggcccccat aaactcttta 1800 aaatgcttta gatagtgggg gtsgacgtca tcaatgacgt tgtaccaagc atcattactg 1860 tacacctttg gactaaggtc cagatgtcca cacaaataat tatgtggacc catagaccta 1920 gcccacatcg tcttccccgt cctgctacct ccttctatga caatacttat gggtctccat 1980 ggccgcgcag cggcatcccg aacattctcg gaaacccagt cttcaagttc ttttggaact 2040 tggtcgaaag aagaagaaag aaaaggacaa cgaaaaacct ctaaaggagg tgcaaagatc 2100 ctatctaaat tggcatttaa attatgaaat tgtaaaacaa aatcttttgg agctaactcc 2160 ctaattacat taagagcctc cgacttactt cctgtgttaa ttgctttggc gtaagcatca 2220 ttggctgatt gttgaccccc tctagcagat cttccatcga tctgaaactc accccattcg 2280 agggtgtctc cgtccttatc aatatatgat ttgacgtcgg agcttgattt agctccctgt 2340 atgtttggat ggtaatgtgc tgacctggtt ggggatacca gatcgaagaa tctcttattc 2400 gtgcatctgt atttcccttc gaactggatg agcacatgga gatgagggct cccatcttcg 2460 tgcagttctc tgcagatttt gatgaatttt ttgtttgtta cagtatctaa tgtttttatc 2520 tgggcaaggg tttcctcttt tgtaagacag catttgggat atgtaagaaa ataatttttg 2580 gcatttattt ggaattttct gggtggtgcc atttgactca gtcaatgggt accaattgag 2640 aggatttcat tctactcagg gtatcggtac attggtaccc atatatactt ggttacctaa 2700 tggcataatt gtaatttttt tatgggcttc caagcggccc acgactataa tatt 2754 //