ID EU487009; SV 2; circular; genomic DNA; STD; VRL; 2723 BP. XX AC EU487009; XX DT 11-MAR-2008 (Rel. 95, Created) DT 01-MAY-2011 (Rel. 108, Last updated, Version 3) XX DE Tomato leaf curl virus clone AFPL9 segment A, complete sequence. XX KW . XX OS Tomato leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2723 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M.U., Green S.K., Kenyon L., RA Jan F.J.; RT "Distribution and genetic diversity of begomoviruses infecting tomato and RT pepper plants in the Philippines"; RL Ann. Appl. Biol. 158(3):275-287(2011). XX RN [2] RP 1-2723 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT "Molecular identification of Solanaceae- and Cucurbitaceae-infecting RT begomoviruses in the Philippines"; RL Unpublished. XX RN [3] RP 1-2723 RA Shih S.L., Kuo C.G., Lin L.J., Green S.K.; RT ; RL Submitted (13-FEB-2008) to the INSDC. RL Virology, AVRDC-The World Vegetable Center, P.O. Box 42, Shanhua, Taiwan, RL Republic of China XX RN [4] RC Sequence update by submitter RP 1-2723 RA Shih S.L., Kuo C.G., Lin L.J., Green S.K.; RT ; RL Submitted (16-AUG-2010) to the INSDC. RL Virology, AVRDC-The World Vegetable Center, P.O. Box 42, Shanhua, Taiwan, RL Republic of China XX DR MD5; 86e630d7d1696f3823e955a9ba9a8e0c. XX CC On Aug 16, 2010 this sequence version replaced gi:169260862. XX FH Key Location/Qualifiers FH FT source 1..2723 FT /organism="Tomato leaf curl virus" FT /segment="A" FT /mol_type="genomic DNA" FT /country="Philippines:Midanao" FT /isolation_source="tomato" FT /clone="AFPL9" FT /db_xref="taxon:28350" FT gene 96..449 FT /gene="V2" FT CDS 96..449 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:B1PR41" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B1PR41" FT /protein_id="ACA52114.2" FT /translation="MANMWDPLVHPFPESLHGFRCMLAIKYLQSLQGKYSPDTVGHEFL FT KDFICILRSRNYAEAFNRYSDVVANVYNTSEAQLRESVQSPCLCPHCPRHVLQAKVVDL FT QANVSQAQDVQNV" FT gene 265..1041 FT /gene="V1" FT CDS 265..1041 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:B1PR48" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B1PR48" FT /protein_id="ACA52115.1" FT /translation="MPKRSIDTVTSLPMSITRRRLNYGSQYSLPASVPTVPDMSYKRRS FT WTYRPMYRKPKMYRMYRSRDVPRGCEGPCKVQSYEQRHDIAHVGKVICVSDVTRGNGLT FT HRVGKRFCVKSVYVLGKVWMDENIKTKNHTNTVMFFLVRDRRPYGTPQDFGQVFNMYDN FT EPSTATVKNDNRDRYQVLRRFQATVTGGQYASKEQAIVKKFMKINNHVTYNHQEAAKYD FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1038..1442) FT /gene="C3" FT CDS complement(1038..1442) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancement protein" FT /db_xref="GOA:B1PR43" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B1PR43" FT /protein_id="ACA52116.1" FT /translation="MDSRTGGLITAAQAENGVYTWTITNPLYFKISQHDERPFLGNHDI FT ITVQIQFNHNLRKALGIHQCFLICKIWTRLRPQTWRFLRVFKYHCMKYLDSLGVISINN FT VIRAFDYVLYDVLEKTIDVQISHIIKFNIY" FT gene complement(1183..1590) FT /gene="C2" FT CDS complement(1183..1590) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activation protein" FT /db_xref="GOA:B1PR44" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B1PR44" FT /protein_id="ACA52117.1" FT /translation="MQNSSPSQNHCTQVPIKVQHKIAKQRPIRRRRIDLPCGCSYYLGL FT NCASYGFSHRGTHHCSSGREWRIYLDDNKSPIFQDIPTRREAVPGEPRYHNGTNTVQPQ FT PEESVGNTSMFSDLQNLDSFTSSDLAFLKSI" FT gene complement(1490..2578) FT /gene="C1" FT CDS complement(1490..2578) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:B1PR51" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B1PR51" FT /protein_id="ACA52118.1" FT /translation="MAPPRQFRINAKNYFLTYPQCSLTKDVALSQLQNLETPTNKKYIK FT ICRELHADGSPHLHVLIQFEGKFQCKNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT NKDGDTVEWGKFQVDGRSARGGQQTANDAYAKAINTGSKSEALNVIRELAPKDYILQFH FT NLNANLDRIFAPPLEVFVCPFLPSSFDQVPREIEQWVSENVRDAAARPWRPISIVIEGN FT SRTGKTMWARSLGQHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSELKNWALKNAEFITITKPL FT YSGTHQSPTQNSQAETNTQAEN" FT gene complement(2131..2421) FT /gene="C4" FT CDS complement(2131..2421) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B1PR46" FT /protein_id="ACA52119.2" FT /translation="MGALISMCSSSSKGSSNARIKDSSIWYPQPDQHISIQTFRELNQV FT PMSNPILIKTETPSNGVSFRSTEDLLEGVNKQPMMLTPKQLTQEVSRRLLM" XX SQ Sequence 2723 BP; 733 A; 523 C; 596 G; 871 T; 0 other; accgtgggac gcgccttttt tttaaccaat catattggac cttgacagct atttaaagtg 60 cattctgcac cataaaagag ttttctttat aggtaatggc gaacatgtgg gatcctctag 120 ttcacccctt ccctgaaagc ttgcacggct ttagatgtat gcttgccatc aaatatcttc 180 aaagcttaca gggcaaatat tctccggata ctgttgggca tgagtttttg aaagatttta 240 tatgtatttt gcgtagtagg aattatgccg aagcgttcaa tagatacagt gacgtcgttg 300 ccaatgtcta taacacgtcg gaggctcaat tacgggagtc agtacagtct ccctgcctct 360 gtccccactg tcccagacat gtcttacaag cgaaggtcgt ggacttacag gccaatgtat 420 cgcaagccca agatgtacag aatgtataga agccgtgatg ttcctcgtgg gtgtgaaggc 480 ccgtgtaagg ttcagtccta tgagcagcgc catgatatag cccatgtggg taaggtcata 540 tgtgtttctg acgtcactcg tggtaatggg cttacacatc gtgtaggaaa gaggttttgt 600 gtaaagtctg tgtatgtgtt ggggaaggtc tggatggatg agaacatcaa gactaagaat 660 catactaaca ctgtcatgtt ttttttagta cgtgatagga ggccatatgg gactccccag 720 gattttggtc aggtttttaa catgtatgat aatgagccta gtactgccac tgtaaaaaat 780 gataatagag atcgatatca ggttcttcgt agatttcaag ctactgtaac gggaggtcag 840 tatgcaagca aggagcaagc aatagttaag aagttcatga agattaacaa ccatgtcact 900 tacaatcatc aagaggctgc gaagtacgat aaccacacag aaaatgcctt gttgttgtat 960 atggcatgta ctcatgctag taatccagtg tatgctacgt tgaagatcag aatctatttc 1020 tatgattctg ttcaaaatta ataaatattg aattttatta tatgagaaat ttgtacatcg 1080 attgtttttt caagtacatc gtatagtaca tagtcgaatg ctctaattac attgtttatg 1140 ctaataactc ctaaactatc taaatatttc atacaatgat atttaaatac tcttaagaaa 1200 cgccaagtct gaggacgtaa acgagtccag attttgcaga tcagaaaaca ttgatgtatt 1260 cccaacgctt tcctcaggtt gtggttgaac tgtatttgta ccgttatgat atcgtggttc 1320 cccaggaacg gcctctcgtc gtgttgggat atcttgaaat ataggggatt tgttatcgtc 1380 caggtatata cgccattctc tgcctgagct gcagtgatga gtccccctgt gcgagaatcc 1440 atatgacgcg caattaagtc ctaaatagta agagcagccg cacggaagat caattctccg 1500 cctgcgtatt ggtctctgct tggctatttt gtgttggact ttgatgggta cctgagtaca 1560 atggttttgt gatggtgatg aattctgcat tctttagtgc ccagtttttg agttcactat 1620 ttttgtcctc atctaagtac tctttatacg atgacgtagg accaggattg cagaggaaga 1680 tagtgggtat tccaccttta atttgaatag gtttcccgta cttcgtgttg ctttgccagt 1740 ctctttgggc ccccatgaac tctttaaaat gctttagata atgcggatca acgtcatcaa 1800 tgacgttata ccaagcatca ttgctgtaaa cctttgggct taggtccaga tgtccgcaca 1860 ggtaattgtg ttggcccaga gatctagccc acatcgtctt tcctgttcta ctattgccct 1920 caattacaat acttatgggc ctccaaggcc gcgcagcggc atccctgaca ttctcggaaa 1980 cccattgttc aatttctctt ggaacttgat cgaaagaaga aggaagaaaa ggacaaacaa 2040 aaacctctaa aggaggtgca aaaatcctat ctaaattcgc atttaaattg tgaaattgta 2100 aaatataatc tttaggggct aattctctaa ttacattaag agcctccgac ttacttcctg 2160 tgttaattgc tttggcgtaa gcatcattgg ctgtttgttg accccctcta gcagatcttc 2220 cgtcgacctg aaacttaccc cattcgacgg tgtctccgtc tttattaata taggatttga 2280 catcggaact tgatttagct ccctgaatgt ttggatggaa atgtgctgat ctggttgggg 2340 ataccaaatc gaagaatctt tgattcttgc attggaactt cccttcgaac tggatgagca 2400 catggagatg agggctccca tctgcgtgca gttctctgca gattttgatg tattttttat 2460 ttgttggtgt ttctaggttt tgtaattggg aaagtgctac gtctttagta agagagcatt 2520 gtggataagt gaggaaataa tttttggcat ttattcgaaa ttgtctggga ggtgccattt 2580 gacctagtca atggacacca attgagagga tttcatcttt ctatagtaat cggtgtctgg 2640 ggtcttattt atacatagac actaaatggc attattgtaa ttttttccaa gatttcacac 2700 gcgtcccacg tatagttaat att 2723 //