ID EU450838; SV 1; linear; genomic RNA; STD; VRL; 3980 BP. XX AC EU450838; XX DT 03-MAR-2009 (Rel. 100, Created) DT 20-FEB-2010 (Rel. 103, Last updated, Version 2) XX DE Radish mosaic virus isolate RaMV1 segment RNA2 polyprotein gene, complete DE cds. XX KW . XX OS Radish mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-3980 RX DOI; 10.1007/s11262-009-0443-1. RX PUBMED; 20044790. RA Petrzik K., Koloniuk I.; RT "Emerging viruses in the genus Comovirus"; RL Virus Genes 40(2):290-292(2010). XX RN [2] RP 1-3980 RA Petrzik K.; RT ; RL Submitted (08-FEB-2008) to the INSDC. RL Biology Centre Academy of Sciences of the Czech Republic, Institute of RL Plant Molecular Biology, Branisovska 31, Ceske Budejovice 370 05, Czech RL Republic XX DR MD5; cb45e18324b385dd8aeacd15c0baad42. XX FH Key Location/Qualifiers FH FT source 1..3980 FT /organism="Radish mosaic virus" FT /segment="RNA2" FT /isolate="RaMV1" FT /mol_type="genomic RNA" FT /country="Czech Republic" FT /db_xref="taxon:328061" FT CDS 415..3702 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:C0IQ97" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C0IQ97" FT /protein_id="ACE06774.1" FT /translation="MTYFSTQNHFVNYILARHGCDEDSGDFRVSPQQKYNELLVQSPLK FT FAFFIFFFHLVVLIESLFDFRFAPDSWFSYRFQGLWRSLRKPIELEKAHRAALAKYLPQ FT SPIFQEPIITHSADTILEMEQVMERGVAAKALMVQDKVSINKKRKYEGIKDCIPSGKDM FT YVFRQKMFDMLMRRRKSKEVDITRIEGSEIIEMKHMDVGTLTPGENVVLNVKLVNDDSV FT LSSKPSDYTLHHSTRESKYATAMHVGAIEVIFDSFASPSSDIVGGVVLVDTAHKTVENA FT VRSVFVTGLAGGKMIRVLMYPNTLVEIGPRMNERFKLVCTTSNSDIADGFNLAAVKVNV FT VGCTQSLTSRYVPQPFLEQCLNEERGTVVEYLGQMSYVMHNSNEISEEFLAKQTMAFDL FT GSNLRLQGSSSGASLQRSTSMRYLVGPRQSFKQIESESETSAFERKRLEARDGADKFRD FT PTFVDPVYGKTRRAFGQTSMTRSLLNRFSSANETEGTPLDTKIARTKILLTKVMAGGKI FT LYTARLSDVLLNKDQRAAISFQRTHVQHKKLIALATLGIPENTGCALMMCYNSGVRGKA FT VVDAYTASAEASVIWNPACQRQAMLEIDVNPCQSAWSYQYLRQTNSYFNVVCISGWTTT FT PLTDLSMTIDWYLSSEESETSIYYASGGNSVIKLNRWMGRLIFPQGTETTMQRMPLAIG FT GGAGGNGLVYMNMPNALCSLWRYMKGGVKFEVIKLSSPYVKATIAFFIAFTDVDATLPN FT LEAYPHKLVQFAEIQDRVTIEFDKDEFVMAWSSQVHTNVPLDQDGCPYLYAVVHDCAGS FT TIPGDFNIGVVLKEMVDVEAIGRHPGWKGARPLPASPQGLRKSSSGVWNELYTVRAPPE FT AKSTDVVQFAIDLIGVGISTAGRGTWSLETSNSPMNNLLRTATWKSGTIHFQVLMEGNP FT LIKRGDWASYCEISLVQSAKDTTLSSRNWVMKDPSSWELEFDIKIEGPNAGFENWEAHL FT SNQTSWYLTFAIYNPDQTTTFTVNGMLNDDFCCAGNTLMPPFLEPQSTFSEKTPLSQMT FT FSYEDNLVRDVDPPDQENVQERPETSSDQDRRLLQQRKRGFNNKFVF" XX SQ Sequence 3980 BP; 1170 A; 739 C; 916 G; 1155 T; 0 other; tattaaaatt ttattaaaat tttgataaac cgcaatcagg accagtgtcc gaactgttac 60 ttttgaactc aattttcatc gaagacaggt aattggctta caaaccgatc agactgttat 120 tgagtacaaa atacgtggat taaatacgag ctcatacgag catcttgtgc gaagtaaagg 180 acaccagtat tgcgcctcta gtgcatccgc acttttgggc tttacggtta ccttgttgtt 240 tacaatccta atcaaacgaa ggtgggtaac gagcttacaa acttgtcaga ccaccacagg 300 aaacgatagc acgatttcac attgctgtgc ctcatagaga atatcagata ttgtgaaaag 360 tgcgctggga cagaagtcac actcgtctaa aatcaattaa atcattgggc gtgaatgact 420 tacttttcca cacagaatca ttttgtaaat tacatattag ctaggcacgg ttgcgacgag 480 gattcaggag actttagagt ttcccctcaa caaaaataca acgaattgtt agttcagtct 540 cctttgaagt ttgctttctt tattttcttc tttcacttag tagttttaat agaaagtttg 600 tttgattttc ggtttgctcc agacagctgg ttttcttatc gttttcaagg attgtggagg 660 agtttgagaa agcctattga gctcgaaaaa gcccataggg cagcccttgc aaagtattta 720 ccacaatcac ctattttcca agaacctatc attacgcatt ccgcggacac cattctcgaa 780 atggagcagg ttatggaacg tggtgtagca gcaaaagctt tgatggtgca agacaaagtg 840 tcgatcaaca aaaagcgaaa gtatgagggc ataaaagact gcattccatc aggaaaggat 900 atgtatgttt tccgtcagaa gatgtttgac atgctaatgc gtcgtagaaa gagcaaggaa 960 gttgacatta ctcgcattga agggagtgaa ataatagaga tgaaacacat ggatgttgga 1020 actttaaccc ctggtgagaa tgtcgtactg aacgtcaagc ttgtgaatga tgatagtgtt 1080 ttaagtagca aacctagtga ctacactctt catcactcca cacgcgagtc aaagtatgcc 1140 acggccatgc atgtcggagc tatagaagtt atatttgata gctttgcatc tccctctagt 1200 gatatagttg ggggagtggt cttggttgat acggcacata aaaccgtgga aaatgcagta 1260 cgaagcgttt ttgtgacagg attagcggga ggaaaaatga tacgagtgct catgtatcca 1320 aacacgttag tcgagattgg accaaggatg aatgaaagat ttaaactggt gtgtaccact 1380 tccaacagtg atattgcaga cggtttcaat ttagctgcag tcaaggttaa cgtcgttgga 1440 tgtacccaaa gcttaacttc ccgatatgtg ccacagcctt tcctagaaca gtgtcttaac 1500 gaagaacgtg gaacagttgt tgagtatcta gggcaaatgt cttatgtgat gcataattcc 1560 aatgagattt ctgaggaatt tttagcaaag cagacaatgg catttgatct tgggagtaac 1620 ttgcgtttgc aagggtcttc ttcgggtgca tctttgcaac gctccacctc aatgcgatat 1680 ctggtaggac ctagacagag ctttaagcag atagagtctg agtcagaaac ctcagcattt 1740 gaaaggaaaa ggcttgaggc tagggatggc gcagataagt ttcgtgatcc aacatttgta 1800 gatcctgttt atgggaaaac gagacgagca tttggacaaa catctatgac gcgctcattg 1860 cttaacagat tttcctcagc caatgaaaca gagggaacgc cacttgatac taagatagca 1920 agaactaaga tcttgttaac gaaggtcatg gctgggggaa agattttgta cacagcacgt 1980 ttaagtgatg ttctccttaa taaagatcaa cgagcagcta tttctttcca aagaacccat 2040 gttcagcaca aaaagttaat tgctttagca accttaggaa tcccagaaaa cactgggtgc 2100 gctctgatga tgtgctacaa cagtggagtg cgtggcaaag cagttgttga tgcttataca 2160 gcgtcagcag aagctagtgt gatttggaat ccagcgtgtc aaagacaagc aatgcttgaa 2220 atagatgtga acccatgcca gagcgcctgg agctatcagt acctcagaca aaccaacagc 2280 tattttaatg tagtatgtat ttcaggttgg acaacaactc ccttaacgga tttgtctatg 2340 accatagatt ggtatttgag ttctgaggaa agcgagactt ccatttacta tgcctcaggc 2400 ggcaattctg tgataaagct gaaccgatgg atggggcgtt tgattttccc acagggaacg 2460 gaaactacaa tgcagcggat gcccttagct ataggaggtg gtgcgggagg aaatggattg 2520 gtgtatatga atatgcctaa tgccttgtgt tctctatgga gatacatgaa aggaggcgtt 2580 aagtttgagg taatcaagct tagttccccc tacgtaaagg cgaccatagc tttcttcata 2640 gccttcacag atgttgatgc aacattgcca aatcttgaag cgtatcccca caaacttgtt 2700 caatttgcag aaatacagga cagggtaaca attgagtttg ataaagatga atttgttatg 2760 gcctggtcat cacaggtaca tactaatgtg cctttggacc aggatggttg cccttatttg 2820 tatgcggttg ttcacgactg tgcaggttcc accattccag gagatttcaa tataggagtt 2880 gttctgaaag aaatggttga tgtggaggct attggaaggc atccaggatg gaaaggggct 2940 cgccctttgc cagcgtcacc acaaggcctg aggaaaagtt catcgggagt gtggaatgaa 3000 ttatacacag taagagctcc ccctgaagcc aaatccactg acgttgttca atttgcaatt 3060 gatcttatag gtgttggaat atccacagca ggacgtggga cgtggtcttt agagactagt 3120 aacagtccca tgaacaattt actgagaaca gccacgtgga aaagcgggac tattcatttt 3180 caggtgctta tggaagggaa tccactgatc aagagaggag attgggcttc ctactgtgaa 3240 atctctctgg ttcagagtgc taaggacacc acattatcca gccgaaattg ggtgatgaag 3300 gatccctcct catgggaatt ggagttcgac atcaaaattg aaggacctaa tgctggtttt 3360 gaaaattggg aagctcattt gagtaatcaa acgagctggt acttaacatt tgctatttac 3420 aaccctgatc aaaccactac gttcaccgtg aatggaatgc tcaatgatga cttttgttgt 3480 gctggcaata cactaatgcc accatttctc gaaccacaaa gcacattttc agaaaagaca 3540 cctctatctc agatgacctt cagttatgag gacaatctgg taagagatgt tgatccaccg 3600 gatcaagaga atgtgcaaga aagaccggaa acgagcagtg atcaagatcg cagactgtta 3660 cagcaaagaa aacgtggttt taacaataaa tttgtctttt agagttagtt tattttgaaa 3720 ttttctttag tcgttttctt ttcctttgtt ttaatatgct ttaagtttgt ttgttttctt 3780 tagttttctt cttttgttta gaagttttat ctatattttg ttctagatta aatcttcttt 3840 gaatgtttga aagtctgtgg aaacattccg gttcagggag cagaaccgcc taggaggtag 3900 gactctgggt ttagttgctc tcacatgtta taaatagaat acatttgttt acgtttgtta 3960 ttgagtgtgt tttcttttta 3980 //