ID EU450837; SV 1; linear; genomic RNA; STD; VRL; 6048 BP. XX AC EU450837; XX DT 03-MAR-2009 (Rel. 100, Created) DT 03-MAR-2009 (Rel. 100, Last updated, Version 1) XX DE Radish mosaic virus isolate RaMV1 segment RNA1 polyprotein gene, complete DE cds. XX KW . XX OS Radish mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-6048 RA Petrzik K., Hola M., Koloniuk I.; RT "Genome sequence of a Czech isolate of Radish mosaic virus"; RL Unpublished. XX RN [2] RP 1-6048 RA Petrzik K.; RT ; RL Submitted (08-FEB-2008) to the INSDC. RL Biology Centre Academy of Sciences of the Czech Republic, Institute of RL Plant Molecular Biology, Branisovska 31, Ceske Budejovice 370 05, Czech RL Republic XX DR MD5; 7e0d1845ae716c96b156b245ad729a1c. XX FH Key Location/Qualifiers FH FT source 1..6048 FT /organism="Radish mosaic virus" FT /segment="RNA1" FT /isolate="RaMV1" FT /mol_type="genomic RNA" FT /country="Czech Republic" FT /db_xref="taxon:328061" FT CDS 314..5875 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:C0IQ96" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:C0IQ96" FT /protein_id="ACE06773.1" FT /translation="MACVTLDRDQQSYALIPYVTDKHVTWLLKCYVRVNTFSPDFPVTK FT RLERLRQHHFDLLCLGYGAFVMHRNAMAHVPRTVETADFIFEDYHQFLCDLVTGNAGIT FT RLRKYINVCYGTYLDMVLEFSACTLDDEGDDDFELQGLKNCLHSLANYIPSTVARAISW FT STNKVIDGIRARFEEVVAEWCPMAMQACSWISNIWDKVTLWVQESIEAMRWFLKGAREL FT FYYGVSILTASCVIGIVEKILVATNLLAPNRGLVEAFLSSAALTGAFMSFKKKEDPTPM FT ITMISVLAGVVSAAVTAMFGAPNVAVLQGPVELLENAATALGIFCETTLLSMGKTCQAV FT NQISTCAGNLKAMAGKLFGILQDFIWKVFGMESRFLRDASLMFEEDVDQWLKDIAECQD FT SYLAKAYSSQDDIMKMQCLIKKGHDMRSKVLKVTSRISPVLANTVTRGVESVEKLLRES FT LCQGIKATRKIPFVVYAYGESRTGKTLVVDKLITDFQNHFGLGKDTVYSRNPIDQYWSG FT YRRQPIVSIDDFGAVACDPSMEAQMIPLVSSAPLPLTMAAIEEKGMMFDSKFIFCSSNL FT LEASPESKLQDNQAFRNRRHVLINVKLDATKPYNMHDFTENQIYQILKYDNGTYVVQAE FT FHTYGDLFSYCLERWEKHENEQTANLANSLEEPKADGDFINFEFLMHTLLRRNLPDKMV FT DVIFEERTKTQFIPLVTYRRKGKLWSYYVSPEGRIQIISESLEDPKALAKEVESMEFLR FT RMYEMLRYNEEINLVVKMHLKDLAREDFYDEKMNYIGTFGNEREHALMRSTFDSMAGWH FT KVVLCGMGVLQDRCSSVKWYDGIIEKIQDTMYTLYSKEISEWPMGLKIVVGVLLTSLFG FT AGLWKLMGILQGTGNVAALGVTAATHFGHEHGGARATAQSRKPNRYDVAQYKYRNVPIT FT KRAWAQGDMPISHATAMIFDRIKASWQYGHTEAQIVMVPGRRFIGYAHFFRTIERPIQV FT RIHTASGSQPLFYKPENMHYFEESELCVYEDSALQDIAHTCWDLFEWDFEQIQRDSFKA FT LFLSCKRKSSTGQPNPEWADIDVRTRSESLMVQEGEYSRILPRYLEYTAPTVNHDCGSL FT IVAEVNKTFKIVGVHVAGSGGTKGYACLLPPLVKKVQAQHAQKFFDYLPFAEKEGEGIE FT KVAMLQKGIHIPLPTKTALVETPVEWHLDTPCDKYPSILSSDDPRLEVSGHTDYDPFKA FT GILKYKDPMGVLDNKLLIEVCEEIEQSWLDCKEEGETFEEVSLEQAINGVRDVDYMDRI FT PLATSEGFPHILSRSHGEKGKIRFVEGDSEAMMLIPGTSVAEALEIMEAQLENEVPTLI FT GIECPKDEKLPHRKIFEKPKTRCFSILPMEYNLLVRRRFLTFVRFIMRNRNVLPCQVGI FT NPYGMEWTDLAMRLKRKGNNILCCDYSSFDGLLSKQVMKAMSDMINSFCGGSESSKRKR FT EHLLMACCSRYAICKNSVWKVECGIPSGFPLTVICNSIFNEILIRYSFKAILRSQKVPD FT MVSVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRLKEFLATLRITITDGKDKTSPFLQ FT FRCLEDCDFLKRGFKNRGLYWDAPEEKESLWAQLHYVNANNLEKHEAYKTNLVTVLREL FT FMWDKKECAELRRKALQRISWLVPSDLQTVAQIEAWYAGNRGKYLPDSSDSISMLLQKE FT NLGPLLAPQGEQRGIEIMPRVRTANLAHENFRDAKDDEVWVLCQTMYPHGRLPEGVIAV FT NWPVGTGRGGLPTSTWMDENFKRPTSELRKKLKSALDNGKKLVFATREGILPCNIMAVL FT FLVLEKKMKPEESNVILSAAILQCKSLGYLPRECDFAF" XX SQ Sequence 6048 BP; 1736 A; 1061 C; 1498 G; 1753 T; 0 other; taaaccgcaa tcaggaccag tgtccgacca gttacaatta cattctcaat tatttacgaa 60 ggtaggtaag gggcttagaa acctctcaga ctactattga gattggaatt tgttacacgt 120 tttcccagac tttctcgggc aagccatcgc gtgcttgcca actggattgt tgctgagaac 180 tttagtgttg tttgttgttc tgcgtttgca ttattgctgt gccctttgtc taaggaatat 240 cagatattgt ttgcatacac cgttacacat tttcttgatt tggaattacc gcaggcttta 300 agccattaaa ataatggcct gcgttacttt agatcgagat caacagagtt atgctctgat 360 tccgtacgtt acagataaac atgttacatg gcttctgaag tgttatgttc gagtgaacac 420 tttcagtcct gattttccgg ttaccaaacg tcttgagcgt ctgaggcaac atcactttga 480 cttgttgtgc ttaggttatg gggcgtttgt tatgcacaga aatgctatgg cacatgtccc 540 acgcacagtg gaaactgctg attttatatt tgaagattac catcagtttc tttgtgattt 600 ggttacagga aatgctggaa tcacacgatt aaggaagtac ataaacgtgt gttatggcac 660 atatctggac atggttcttg agtttagtgc atgcacactt gatgatgagg gcgatgatga 720 ttttgaattg caaggcctaa aaaactgttt gcacagtttg gccaattata ttccgtctac 780 tgtagcaagg gccatttcgt ggtcaactaa taaggtcatt gatggaattc gagcacgttt 840 tgaagaggta gttgctgaat ggtgtcccat ggcaatgcag gcatgttcct ggatatctaa 900 tatttgggac aaggttactc tgtgggtaca agaatccatt gaagcaatgc gttggttttt 960 gaaaggagcc cgtgaattat tctactatgg agtttccatt ttgacagcca gttgcgtaat 1020 tggtatagtg gaaaaaatat tggttgcgac aaatttgttg gctcccaatc gtggactcgt 1080 agaagctttt ctatcaagtg ctgctttgac tggtgcattt atgtcattta agaagaaaga 1140 ggatcccaca ccgatgatta ctatgatttc agtgcttgct ggagtggtgt cagctgccgt 1200 tactgccatg tttggagcgc ccaacgttgc tgtgctacaa ggcccagttg aattgttgga 1260 aaatgctgca actgcacttg ggattttctg tgaaacaaca ctgttgtcca tgggaaaaac 1320 ctgtcaagca gtgaaccaaa tcagtacatg tgctggaaac ttaaaggcaa tggcaggcaa 1380 actttttgga attttgcagg actttatttg gaaagtattt ggcatggagt ctagatttct 1440 gcgagatgct tccttgatgt ttgaggaaga tgttgatcaa tggttgaaag atattgcaga 1500 atgccaagat tcgtatctgg ccaaggctta ttcatcacag gatgacatca tgaagatgca 1560 atgccttatc aagaaaggtc acgatatgcg ttccaaagtg ttaaaggtca ctagtcgcat 1620 ttctcctgtt ctggcaaaca cggttacgcg aggtgtcgag tctgtggaaa agttgctgag 1680 agaatcttta tgtcaaggaa taaaggcaac acgaaaaatt ccatttgttg tgtatgctta 1740 tggagaatct agaactggca aaacgttggt cgttgataag ttaatcacag attttcaaaa 1800 ccattttggt ctagggaagg acactgttta cagtagaaat cctatagacc aatattggag 1860 tggataccgt agacaaccaa ttgtgagtat tgatgatttt ggtgccgtag cttgcgatcc 1920 ttctatggag gctcaaatga taccattggt gtcaagcgca cctttgccct tgacaatggc 1980 agctatagaa gagaaaggca tgatgtttga ttcaaagttt atcttttgct cttccaattt 2040 gttggaagca agtcctgaga gtaaactgca agacaaccaa gcttttcgaa ataggagaca 2100 cgtgctaata aatgtcaagt tagatgccac aaagccatac aacatgcatg actttacaga 2160 aaaccagatt tatcagatat tgaaatatga taatggtacg tatgttgtgc aggctgagtt 2220 ccacacttat ggggatttgt tctcttattg cttggaacgg tgggagaaac atgaaaatga 2280 gcaaacagca aatcttgcca atagtttgga agaacccaaa gctgatggag atttcataaa 2340 tttcgagttc ttgatgcaca cgcttctcag gcgaaacctc ccggataaga tggttgatgt 2400 tatttttgag gaaagaacca agactcaatt catacccctt gtcacttaca ggcgaaaagg 2460 aaagctatgg agttattatg tcagtccaga aggaaggatc caaatcatat ctgagtcact 2520 ggaagatcca aaggctcttg caaaggaagt tgaatcaatg gaattcctgc gtaggatgta 2580 tgagatgctg agatacaatg aggaaataaa cttggttgtc aagatgcacc tcaaggattt 2640 ggccagggaa gacttttacg atgagaagat gaactacatc ggaacgtttg gcaatgaaag 2700 agagcacgca ttaatgcggt ctacttttga ttcaatggca gggtggcaca aagttgtgtt 2760 gtgtggaatg ggagttcttc aagatcggtg ttcctctgtc aagtggtatg atggtataat 2820 tgagaagatt caggacacca tgtacacact ttacagcaag gagataagcg agtggcctat 2880 gggacttaaa attgttgttg gggttctgct aacatcactt tttggagctg gactttggaa 2940 attgatgggc attctccaag gaactggtaa tgtcgccgct ctaggagtta ctgctgcgac 3000 tcattttgga catgagcatg gaggagctag agccactgca caaagccgca agcccaatag 3060 gtatgatgtg gcacagtaca aatacagaaa cgttcccatt accaaaagag cttgggcaca 3120 aggagatatg cctatcagtc atgcgacggc aatgattttt gaccgtatta aggcaagttg 3180 gcagtacgga cacacagaag ctcaaatagt gatggtgcca ggaagacgtt ttattggata 3240 cgctcacttc tttcgcacca ttgagcgccc aattcaggta agaatacata cagccagtgg 3300 ttctcagccc ttgttttata agcctgaaaa tatgcactat tttgaagaaa gtgagttgtg 3360 tgtttatgaa gatagtgcac tccaggacat agcgcataca tgctgggatt tattcgaatg 3420 ggatttcgag cagatacaac gggattcttt taaggcacta tttctttctt gcaaaagaaa 3480 gagcagcact gggcaaccaa acccagagtg ggctgatata gatgtgagaa cgcggtcgga 3540 atcacttatg gtgcaggagg gagagtattc acgcattctg ccccgctact tggaatacac 3600 tgcacccaca gtgaaccatg actgcggctc tttgatagtg gctgaggtga ataaaacatt 3660 caagatcgtt ggagtgcacg tggccgggtc tggtggtacc aagggatatg cttgcttgct 3720 gcccccactt gttaagaaag ttcaagcaca acacgctcag aagttctttg attaccttcc 3780 atttgctgaa aaggagggag aaggaataga aaaagttgcc atgttgcaaa aaggcattca 3840 cattcccttg ccaacaaaaa cagccttggt agaaacgcct gttgagtggc atttggatac 3900 gccgtgtgac aagtacccca gtattttgtc gagcgatgat cctcgattgg aagtttctgg 3960 gcacactgat tatgatcctt ttaaagcagg cattctcaaa tacaaggatc ctatgggtgt 4020 gttggataac aagctgttga tagaagtgtg tgaggaaatt gaacagagct ggcttgattg 4080 taaagaggaa ggcgagacat ttgaagaggt cagtctggaa caagctatca atggagtcag 4140 agacgttgac tatatggaca gaattcccct tgcaacgtca gaaggatttc cacacattct 4200 gtcacgatca catggagaga aagggaagat tcgtttcgtg gaaggtgatt ctgaggcaat 4260 gatgttgatt ccaggaacta gtgtggcgga agctttagaa atcatggaag ctcagttgga 4320 aaatgaagtt ccgactctaa ttggaattga gtgtcctaag gatgagaagt taccacatcg 4380 gaagatattt gagaaaccca aaacacgctg cttttccatt ttgccaatgg aatataactt 4440 gctggtacgt agaagatttt tgacttttgt tcgcttcatt atgcggaata gaaatgtgct 4500 accatgccag gtagggatta atccttatgg aatggagtgg acagatcttg cgatgcgctt 4560 aaagcgcaaa ggcaataaca ttttatgctg cgattatagt agctttgatg ggttactttc 4620 caagcaagtg atgaaagcta tgtctgatat gataaacagc ttttgtggtg gtagtgaaag 4680 ttctaaacga aagcgtgaac acttgctgat ggcctgttgc tctcggtatg ctatttgcaa 4740 gaactccgtg tggaaagtgg aatgtggtat tccttctggg tttcccctca ctgtgatttg 4800 caattccatt ttcaatgaga ttttgatcag atatagtttc aaggcaatat tgcgttccca 4860 gaaagtccct gacatggttt cggtgagttt tgacgaatac gttagtatgg ttgtttacgg 4920 agacgataat ttgttgtcag tcagtgaggt tattaagcct tacttcgatg gcaaacgttt 4980 gaaggagttt ctggctaccc tccgtatcac tattactgat ggaaaagata agacaagtcc 5040 gtttctccag ttccggtgtt tagaagattg tgattttctc aaaagaggtt tcaaaaaccg 5100 agggttgtac tgggatgcac cagaggaaaa ggagagtttg tgggcacagc ttcattatgt 5160 taatgccaac aatttggaaa agcatgaagc ctacaaaact aatcttgtga ctgttctgcg 5220 tgagttgttt atgtgggata agaaagagtg tgctgagctt cgaagaaaag cgttacaaag 5280 gatctcatgg ttagtgccaa gtgatttgca gacggttgct cagatagaag cttggtatgc 5340 tggaaaccga ggaaagtatc tcccagattc gagtgatagc ataagtatgc ttttgcagaa 5400 ggagaatttg ggacctttgc tggcacccca gggagaacaa aggggaatag agataatgcc 5460 tagggtgagg actgccaatc tagcacatga gaatttcaga gacgcaaagg atgacgaagt 5520 ttgggtgttg tgtcaaacga tgtatccaca tggccgctta ccagagggag tcattgctgt 5580 caattggcct gttggaacag gaagaggagg cttgccgaca tccacatgga tggatgaaaa 5640 ctttaaacgt ccaacgtcag agctacggaa gaagttgaag agtgctttgg acaatggcaa 5700 aaaattggtt ttcgcaacac gtgagggcat attgccatgc aacatcatgg cagtgctgtt 5760 tttggtactc gaaaagaaga tgaagcctga agaaagtaat gttattttat cagcagctat 5820 tctacaatgt aaatcattgg gttatttgcc cagagagtgt gattttgctt tttagatttt 5880 ctatgtcttc tttgtgcatt tgaaagtctg tggaaatgca ctggttcatg gaacaggacc 5940 acctaggagg taggactctg ggttttattg ttcttgtgtg ctttatataa attaccataa 6000 atattatttt agttttatat tgatatttgg ttattttaaa aaaaaaaa 6048 //