ID EU421059; SV 1; linear; genomic RNA; STD; VRL; 5867 BP. XX AC EU421059; XX DT 16-FEB-2008 (Rel. 94, Created) DT 24-APR-2009 (Rel. 100, Last updated, Version 3) XX DE Squash mosaic virus isolate CH 99/211 segment RNA1, complete sequence. XX KW . XX OS Squash mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-5867 RX DOI; 10.1007/s11262-009-0354-1. RX PUBMED; 19330435. RA Hu J., Zhou T., Liu L., Peng B., Li H., Fan Z., Gu Q.; RT "The genomic sequence of a Chinese isolate of Squash mosaic virus with RT novel 5' conserved ends"; RL Virus Genes 38(3):475-477(2009). XX RN [2] RP 1-5867 RA Hu J.A., Gu Q.S., Zhou T., Fan Z.F., Peng B., Liu L.F., Li H.F.; RT ; RL Submitted (23-JAN-2008) to the INSDC. RL China Agricultural University, Beijing 100094, China XX DR MD5; 96d9f45e6a6c044878cbe1248e77b740. XX CC GenBank Accession Numbers EU421059-EU421060 represent the complete CC genome of Squash mosaic virus CH 99/211. XX FH Key Location/Qualifiers FH FT source 1..5867 FT /organism="Squash mosaic virus" FT /segment="RNA1" FT /isolate="CH 99/211" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:12263" FT CDS 245..5821 FT /codon_start=1 FT /product="polyprotein 1" FT /note="encodes 32K, 58K helicase, VPg, 24K, protease, 87K FT RNA-dependent RNA polymerase" FT /db_xref="GOA:B1A4F8" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:B1A4F8" FT /protein_id="ABZ89551.1" FT /translation="MNFTGKGSVASVHQVVHSEEVMFYLKVYTNMTTDNKGATLPRILA FT TLKEEQNRHVLYLSFYAYCLDFDAGLMECYSIDVEDFVFEQFHDFVTAMLKGCHSLMPL FT RSYTKAVFAERLQLAVNFVPEITTELGGSGPVEAQMQGLRNIAANMLMWIPKKIGALTV FT WTVESIIGSFKEHFLKMINTHCPIVLSMFPWILKIWDRVTEWLTAAADDFAWLLASTEE FT LMTWGMAIMALTTAMSLLVKLLMAVGAIAEPMNLSDICLRTGVVAACCYELTKQSGNCG FT AQLVSLFSGVANVVAGVLSAKFQNQPQTILQDSPIGLLETLAEKLTSLCDVSLINLGKT FT CAAINQIATCANTIKGFVAKIFCTLTHYVWEALGIKTSFLRDATFVLGEDVDGWLQQIS FT QCQNDFIVHASCSQDEFLKLQVLVEKGNNMRNKILQGVRLSPGIISLVTSGIAMLDKLR FT REACLQGNRTERKMPFTIFCQGTSRVGKTLLTSKIVKDFQATLGLAEDTVYSRNPAESY FT WSGYRRQPFVLIDDFGAVKTEPSCEAQLIPLVSSTPYPVPMAAIEEKGMMFDSQFIVCS FT TNFLEPSPEAKIRDDAAFRNRRHVLISVKIDSEKQYDSSDFTQNQIYEIMRYERETYVV FT EQRFTSYADLFVFLQNKYEAHNVEQSANIGSVVPYKGKQNLLVLRGLLNLANVSNAGLL FT KAQAKKLGQPEGFREYTHLFTIQHKNRFAHLGFADAHDSVIWYGEHSDVGKSEEVVKMT FT ASHVMKAYKILIQGENLSLLIKNHLRYLVCPDNYDRDFNFTGGVGDTLLEQQLLPDMQA FT LHSWERFVLCAMGYYMETQKMQPWYKTITGKVFENLKIAYSREFSSWPTPLKAIVGIVL FT AALVGKGFWFAYKALTEGGNGSSLVGAASVVLTSTTNAVAQSRKPNRFDVAQYRYRNVP FT LKRRQWADAQMSLDHSSVAIMSKCKANFEFGNTNVQIVLVPGRRFLGYAHFFKTIKHPI FT TVKIVKDGRHFLHVYDPKGMTYFDDSEICVYHSASFEDIPHTTWDVFCWDWEKSLCKKF FT SADFLSCKYDRLTMSYEPTYAGINVETIFETLELRANGAVRKLPCFLKYEAPTVDRDCG FT SLIVAQVEGRYQIVGIHIGGDGRNGFAAPLPHIPQVADAQCTTKYFSFYPNEQEEETGV FT ALVGQLKPDVWIPLPTKTSLVETEEAWHLDTKSDKVPSILNSEDPRIKQGGNEGYDPFR FT GGVTKYSQPMGHLCGETLGEVANEILEEWHDCLEPDEDFDDVDLEVAINGIDGLDYMDR FT IPLATSEGFPHILSREKGEKGKGRFVETVGGKCALIEGTSVYHAFETLQQQCKKEVPTL FT IGIECPKDEKLPLRKVFDTPKTRCFTILPMEYNLLVRMKFLKFVRFIMRNREKLACQVG FT INPYSMEWTRLAGSLLSVSQNILCCDYKSFDGLLSKQVMTVIATMINRLCGGSQESQTM FT RMNLLMACCSRYAISKNEVWRVECGIPSGFPLTVICNSIFNEILVRYCYRKILEKNNVP FT RPLHVNFPRMVKLVTYGDDNLISVSHVVANVFNGRTLKAEMAQFGVTITDGIDKTSPTL FT EFRKLSNCDFLKRGFKLNGLVYDSPEEKSSLWAQLHYVNTTSLDKQEAYLVNLNNVLKE FT LYMHSPEEMNMIRRKALQLPWINKDDVLNGAQIKEFFAYQRQQLLPDNEDSLDMMLKPD FT LLGSLVPDVVLLDKGVQVSGRLRTINLKYTELSEKRDNEFWVIFNGHFPTNRLPEHCLN FT IKWEAGTGRGNLPTQSWISNNISRPNSEYNRKIRTAYAAGKVLCFCAWGDMIPVSIMLL FT LSSARNDWIPKGQTNEALTSFMEYAKSLKFLPRECEYAFTGAK" XX SQ Sequence 5867 BP; 1577 A; 1081 C; 1406 G; 1803 T; 0 other; gaagatggtt attaaaaatt tctggagaag aaacttttta ataaccatct tcaaggaatc 60 gcgggattcc caccaaagca atcttcaaag taatctctaa acattttctg ttttccagct 120 ttgcacttta cggccctgtg gtagactgtg caattgcttt tctccctcct ttcttttctt 180 cttcaccacc actttcctat cttcaagtac tctcgttttg tttgtgcgat taaatttatt 240 caaaatgaat tttactggaa aaggaagtgt tgctagtgtt caccaagtgg tccattctga 300 ggaggttatg ttttatctga aagtatatac caatatgaca actgacaata agggtgccac 360 tttacctcgt attttggcga cgctgaagga agagcaaaac agacacgttt tgtatttatc 420 cttctacgcc tattgcctgg attttgatgc tgggttaatg gaatgctact ctattgacgt 480 cgaggatttt gtttttgaac aatttcatga ttttgtaact gccatgctta aggggtgtca 540 tagccttatg cctttgagat cttatacaaa agctgtcttt gctgagcgtt tgcagttagc 600 agtgaatttc gttccagaaa tcactactga gcttgggggc tccggacctg tggaagccca 660 aatgcaaggg ctgcgaaaca ttgcagccaa catgctaatg tggataccta agaaaattgg 720 cgccctaact gtgtggacag tagagagtat tattggaagt tttaaggaac attttttgaa 780 gatgattaat actcactgtc caatagtttt gtccatgttt ccctggattc ttaagatttg 840 ggatcgtgtc acggaatggt tgacagcggc agctgatgat ttcgcatggc ttttagcctc 900 tactgaagag ttgatgacat ggggcatggc cattatggct ttaaccacgg ccatgagtct 960 tttggtcaag ctgctgatgg cagttggtgc cattgctgag cccatgaact tgtccgatat 1020 ttgtttgcgt actggagttg ttgccgcgtg ctgttatgag ctaacaaaac agagcggtaa 1080 ctgtggagcc cagctggttt ctctttttag tggtgttgct aatgtcgttg cgggggttct 1140 gagtgcaaaa tttcaaaatc aaccccagac tattttgcaa gattccccta taggcttgtt 1200 ggaaacactt gcagaaaagt taacaagtct gtgcgatgtt tccttaataa acttgggtaa 1260 aacgtgtgcc gcaataaatc agattgcgac atgtgccaat acaattaagg gttttgttgc 1320 aaagattttc tgtactttga cccattatgt ctgggaagct ttgggtatta aaacctcttt 1380 cctgcgagac gccacttttg ttcttggtga ggatgttgac ggttggttgc agcaaatctc 1440 ccagtgtcag aatgatttta ttgtacatgc ttcttgttcc caggatgaat ttcttaagct 1500 gcaggtcttg gtggagaaag gcaataacat gcgaaataag attcttcaag gagtccgcct 1560 ttccccaggc attataagct tggttacttc aggtattgcg atgttagaca agcttcgtcg 1620 tgaggcttgc cttcagggta atagaactga aaggaaaatg cccttcacca ttttttgtca 1680 gggaacttct cgtgttggaa aaacactttt aacttccaaa attgttaagg atttccaagc 1740 aaccctagga ttggctgagg acactgtgta cagtagaaac ccggcagaaa gttactggag 1800 tggatatcgt cgtcagcctt ttgttttgat tgatgacttt ggtgcagtta agactgagcc 1860 ctcgtgtgag gctcaattga tccctctggt ttcttccact ccttaccctg ttcctatggc 1920 ggccattgaa gaaaagggga tgatgtttga ctcgcaattt attgtgtgtt caacaaactt 1980 tctggaaccc agtccagagg caaaaatccg tgatgatgct gccttccgta atcgtcgaca 2040 tgtgttgatt agtgttaaaa ttgatagcga aaagcagtat gattctagtg acttcacgca 2100 aaatcaaatt tatgagataa tgcgctatga gagagagacc tatgttgtgg agcaaagatt 2160 cacctcttat gctgatttgt tcgtgtttct ccaaaataaa tatgaagctc acaatgttga 2220 acaatctgcc aatataggaa gtgtagttcc ctacaaaggc aagcaaaatt tgctagtctt 2280 acgtggcttg ctgaatttgg ccaatgtttc taatgctggt ttattaaaag ctcaagccaa 2340 gaagcttggt cagccagaag gctttaggga atatactcac ttgttcacta ttcagcataa 2400 aaatcgtttt gcacatcttg gttttgctga cgcacatgat tctgtaatat ggtatgggga 2460 acattccgat gtcggcaaaa gtgaggaggt agttaaaatg acagcaagcc atgtcatgaa 2520 ggcttacaag atcctcatac aaggtgaaaa cctgagctta ctcattaaaa atcatttgcg 2580 ttatcttgtg tgtcctgata attatgatcg tgatttcaat tttaccgggg gggttggaga 2640 tacattgttg gagcaacaat tgctaccaga tatgcaggca ctccactctt gggaaagatt 2700 tgttttgtgc gcaatgggtt actatatgga aacccagaaa atgcaacctt ggtacaagac 2760 tattactgga aaggtctttg agaatcttaa gatagcctat tcacgtgagt ttagttcgtg 2820 gcccactcct ttgaaggcca tagttggcat tgttctggca gctttagttg gtaaaggttt 2880 ttggtttgct tataaggctc ttactgaagg tggcaacggt tctagtctcg ttggagctgc 2940 ttctgtcgtt ttgacaagca ctactaatgc tgtcgcccaa agtaggaagc caaatcgttt 3000 tgatgtggca caatatcgct accgcaatgt tccattaaag cgcaggcaat gggccgatgc 3060 gcagatgtct ttggatcata gtagcgttgc aattatgagc aagtgcaagg ctaactttga 3120 gtttggaaac accaatgtgc aaatcgtttt agttcctggt cgaaggtttt tgggatatgc 3180 gcattttttc aagaccatta agcatcccat aacagttaaa atagttaaag atggtcggca 3240 ttttcttcat gtttatgatc ccaaaggtat gacatatttt gatgattctg agatctgtgt 3300 ttatcatagt gctagttttg aggacatacc acacactact tgggacgttt tttgctggga 3360 ttgggagaaa agtctttgta agaaattttc agctgacttt ctttcctgta aatatgacag 3420 attaactatg tcatacgagc ccacatatgc cggcattaat gtggaaacaa tttttgagac 3480 tttggaattg cgagccaatg gtgccgtgcg caagctccct tgttttttga agtatgaggc 3540 tccgacagtt gaccgggatt gcgggagtct tatagtcgca caggtggaag gacgatatca 3600 aatcgttggc atacatattg ggggcgatgg gaggaatggg tttgcagccc ctctgcccca 3660 cattccgcag gttgctgatg cgcagtgtac taccaagtat ttcagttttt atccgaatga 3720 gcaggaggaa gaaacaggtg ttgcgctagt tggtcagctt aaacctgatg tgtggatacc 3780 tttgccaaca aaaacttcat tggtggagac ggaggaagcg tggcatttgg acacgaaaag 3840 tgataaggtg cctagtattt tgaactctga agacccccgt atcaagcaag ggggtaatga 3900 aggatatgac ccctttaggg gaggtgttac taaatattcg cagccgatgg ggcatttatg 3960 tggagaaacc cttggggaag ttgccaatga aattttggaa gagtggcacg attgcctcga 4020 gcctgatgag gacttcgatg atgtggatct ggaagtggct ataaatggta ttgatggctt 4080 ggattatatg gatcgtattc ccttggccac ttctgaaggg tttcctcaca tcctgtcaag 4140 agaaaaaggg gaaaaaggca aagggagatt tgttgagaca gtgggtggta aatgcgccct 4200 tatagaaggc acctcagttt accatgcttt tgaaaccttg caacagcagt gcaagaaaga 4260 agttcctact ttgataggga ttgagtgtcc caaggacgag aaattgcctc tgcgcaaggt 4320 ttttgatacc ccaaagacgc gctgtttcac aatactcccc atggaatata acctgttggt 4380 gcggatgaag ttcttgaaat ttgtccgttt tattatgaga aatcgtgaga aacttgcctg 4440 ccaggttgga attaaccctt acagcatgga gtggacaaga ttggccggaa gccttttaag 4500 tgttagccag aatattttgt gctgtgacta taagtcattt gatggccttc tgagtaaaca 4560 ggttatgaca gtcattgcga ccatgattaa cagattgtgc ggtggatctc aggagagcca 4620 aaccatgaga atgaatctcc tcatggcttg ctgttcccgt tatgctattt cgaagaatga 4680 agtgtggcgt gttgaatgtg gtataccttc tggattccct ttaactgtca tttgtaattc 4740 cattttcaat gaaatactcg tgaggtactg ttatcggaaa attctggaga agaacaatgt 4800 gccacgacct ttacatgtga attttcctcg aatggtgaaa ctcgtcacgt atggggacga 4860 caatttgatt tctgttagcc atgttgttgc gaatgtgttc aatggtagaa ctttgaaggc 4920 tgaaatggca caatttgggg tgactataac ggatggtatt gacaagacga gccccacatt 4980 ggaattccgc aagttgagca attgtgattt cttgaagaga ggatttaaat tgaacggtct 5040 tgtttatgac tcaccagaag agaagagtag tctgtgggcc cagcttcact atgttaacac 5100 gactagtctg gataagcaag aagcttacct tgtgaatttg aacaatgtgc tgaaagaatt 5160 atatatgcac agtcctgagg agatgaacat gataagaagg aaagccctgc agctaccctg 5220 gattaacaag gatgatgtgc taaatggggc ccagataaaa gaattttttg cctatcagcg 5280 ccaacaattg cttccagaca acgaggatag tttggatatg atgttaaagc cagatcttct 5340 aggatctctt gttcctgatg ttgtgttgtt ggataagggt gttcaggtgt ctggtaggct 5400 cagaacgata aatcttaagt acactgaact cagtgaaaag cgtgataatg aattctgggt 5460 tattttcaat ggacatttcc ctaccaaccg tcttcctgag cactgtttga atattaaatg 5520 ggaagcaggc actggcaggg ggaacttgcc aacccaatct tggataagca ataatatttc 5580 caggcctaat tctgagtaca acaggaagat taggactgct tatgctgctg gtaaagttct 5640 gtgtttctgt gcctggggcg atatgatacc tgttagtatt atgttattac tttcttcagc 5700 cagaaatgat tggattccta agggacagac gaatgaggct ttgacctctt tcatggaata 5760 tgcaaaaagt ctcaaatttc tgccacgtga atgtgagtat gcgtttactg gcgcgaagta 5820 aagcttcatg aatttaacta cgttattact atgttgcttt ttctttt 5867 //