Dbfetch
ID EU414797; SV 1; linear; genomic RNA; STD; VRL; 2810 BP. XX AC EU414797; XX DT 02-JAN-2012 (Rel. 111, Created) DT 02-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Cucumber mosaic virus isolate CMV-LW segment RNA2 2a protein (2a) and 2b DE protein (2b) genes, complete cds. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-2810 RA Liu Y., Yu X., Li X.; RT ; RL Submitted (17-JAN-2008) to the INSDC. RL Department of Plant Pathology, Shandong Agricultural University, No. 61, RL Daizong Street, Tai'an, Shandong 271018, China XX DR MD5; 317442ed55942fb370a0f898369143e2. XX FH Key Location/Qualifiers FH FT source 1..2810 FT /organism="Cucumber mosaic virus" FT /segment="RNA2" FT /host="tobacco" FT /isolate="CMV-LW" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:12305" FT 5'UTR <1..45 FT gene 46..2622 FT /gene="2a" FT CDS 46..2622 FT /codon_start=1 FT /gene="2a" FT /product="2a protein" FT /db_xref="GOA:G8XQL4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:G8XQL4" FT /protein_id="ACB56614.1" FT /translation="MAFPAPAFSLTNLLNGSYGVDTPEEVERVRSEQREEAAAACRNYR FT PLPAVDVSESVTEDAHSLRTPDGAPSEEVSVEFVTYGAEDYLEKSDDELLVAFETMVKP FT MRIGQLWCPAFNKCSFISSIAMARALLLAPRTSHRTMKCFEDLVAAIYTKSDFYYDDEC FT EADDIQIDISSRDVPGYSFEPWSRTSGFEPPPICEVCDMIMYQCPCFDFNALKKSCAER FT TFADDYVIEGLDGVVDNATLLSNLGPFLVPVKCQYEKCPTPTVANPPSLNRATDRVDIN FT LVQSICDSTLPTHSNYDDSFHQVFVESADYSIDLDHVRLRQSDLIAKIPDSGHMIPVLN FT TGSGHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFFISYINGNSLASSN FT FVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVP FT ATITYHKKGITSQFSPLFTALFERFQRCLRERIILPVGKISSLEMAGFDVKNKHCLEID FT LSKFDKSQGEFHLMIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRRT FT GDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSVLPPVGDPSKFTTLFNMEA FT KVMEPAVPYICSKFLLSDEFGNTFSVPDPLREVQRLGTKKIPYSDNDEFLFAHFMSFVD FT RLKFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQAYKELYYSDRRQC FT ELINSFSCVELRIERSSSTKQRKKKDGIERRRSDKRRTPAGSYGGGEEAETKVSQAEST FT GTRSQKSQREGAFKSQTVPLLTILSSRWSGTDRDAPPCEHGGIVRV" FT gene 2381..2716 FT /gene="2b" FT CDS 2381..2716 FT /codon_start=1 FT /gene="2b" FT /product="2b protein" FT /db_xref="InterPro:IPR004946" FT /db_xref="UniProtKB/TrEMBL:G8XQL5" FT /protein_id="ACB56615.1" FT /translation="MELNVGAVTNVELQLARMVEAKRQRRRSHKQNRRERGHKSPSERA FT RSNLRLFRFLPFYQVDGPELIEMHHHANMVGLSESEAPCFTLPAEEDHDFDDTDWFAGN FT EWAEGSF" FT 3'UTR 2717..2810 XX SQ Sequence 2810 BP; 696 A; 624 C; 667 G; 823 T; 0 other; cctcccctgt aaaactccct agactttcta gtttctttct tttctatggc tttccctgcc 60 cccgctttct cactaaccaa tcttttgaac ggtagttacg gtgtcgacac tcccgaggaa 120 gtggaacgcg tgcgatctga gcaacgcgaa gaggctgctg cggcctgtcg taattacagg 180 cccctacccg ctgtggatgt cagcgagagt gtcacagagg atgcgcattc cctccgaact 240 ccagacggag ctccctctga agaggtgtct gtagagtttg ttacttatgg cgctgaagat 300 taccttgaaa aatctgatga tgagctcctt gtcgcttttg agacgatggt caaacccatg 360 cgtatcggac aattgtggtg ccctgcgttt aataaatgtt cttttatttc cagcattgct 420 atggccagag ctttgctgtt ggcacccaga acatcccacc gaaccatgaa gtgttttgag 480 gacctggtcg cggctattta cactaaatcc gatttctact acgatgatga gtgtgaagcc 540 gacgacattc agatagatat ctcgtctcgc gatgtacccg gttattcttt cgaaccgtgg 600 tcccgaacgt ctggatttga accaccgcct atctgcgagg tgtgtgacat gatcatgtac 660 cagtgcccgt gttttgattt taatgcttta aagaaatcgt gcgctgagag gacattcgct 720 gacgattatg ttatcgaagg tttagatggt gttgttgaca atgcgactct attgtcgaat 780 ttgggtccat ttttggtgcc tgtgaagtgt caatatgaga agtgtccaac acccactgtt 840 gcgaatcctc cgagtctcaa tcgtgctact gatcgtgttg atattaattt agttcaatcc 900 atttgtgact cgactctgcc cacgcatagt aactacgacg actcttttca tcaagtgttt 960 gtcgagagtg cagactattc tattgatctg gatcatgtta gacttcgcca gtctgatctt 1020 attgcaaaaa ttccagattc agggcatatg ataccggttc tgaacaccgg gagcggtcac 1080 aagagagtag gtacgacgaa ggaggtcctt acagctatca agaaacgtaa tgctgacgtt 1140 ccagagctag gtgattccgt taatctgtcc agactgagta aggctgtggc tgagagattc 1200 ttcatttcat acattaatgg taactctcta gcatccagca actttgttaa tgtcgttagt 1260 aacttccacg attacatgga aaaatggaag tcctcaggtc tttcgtatga tgatcttccg 1320 gatcttcatg ctgaaaattt gcagttttat gatcatatga taaaatctga tgtgaaacct 1380 gtagtgagcg acacactcaa catcgacaga ccggttccgg ctactataac gtatcataag 1440 aagggtataa cctcccagtt ctcaccgttg tttactgcgc tatttgagcg tttccagaga 1500 tgccttcgag aacgcattat tcttcctgtt ggaaagattt catcccttga gatggcagga 1560 tttgatgtta agaacaagca ctgtctcgag attgatctgt ctaaatttga caagtctcag 1620 ggtgaattcc atttaatgat tcaggaacac attttgaatg gtctagggtg cccagctccg 1680 ataactaagt ggtggtgtga tttccacaga ttctcttaca ttagagaccg tagagctggc 1740 gttggtatgc ccatcagttt ccaaagacga actggtgacg catttaccta ttttggtaac 1800 accattgtca ccatggctga atttgcatgg tgttacgaca ccgaccaatt cgaaaagctt 1860 ttattctcag gcgatgattc tctaggattt tcagtgcttc cccctgttgg tgatccgagt 1920 aaattcacga ctcttttcaa catggaagct aaggtgatgg agcccgcagt accatatatt 1980 tgttcgaagt tcttactctc tgacgagttc ggtaacactt tttccgttcc agatccattg 2040 cgcgaggttc agcggttagg cacgaagaag atcccctatt cagacaatga tgaattcctg 2100 tttgctcact tcatgagctt tgttgatcga ttgaagtttt tggaccgaat gactcagtct 2160 tgtatcgatc agctctctct cttcttcgag ttgaagtaca ggaagtctgg ggctgaggct 2220 gctttaatgt taggcgcctt taagaaatat accgctaatt tccaagccta taaagaactc 2280 tactattcag atcgtcgtca gtgcgaattg atcaattcgt ttagttgtgt agagttaagg 2340 attgagcgtt cgagttccac taagcagcga aagaagaaag atggaattga acgtaggcgc 2400 agtgacaaac gtcgaactcc agctggctcg tatggtggag gcgaagaggc agagacgaag 2460 gtctcacaag cagaatcgac gggaacgagg tcacaaaagt cccagcgaga gggcgcgttc 2520 aaatctcaga ctgttccgct tcttaccatt ctatcaagta gatggtccgg aactgataga 2580 gatgcaccac catgcgaaca tggtgggatt gtccgagtct gaggcccctt gttttacgtt 2640 gccagcggaa gaagaccatg attttgacga tacggattgg ttcgctggta acgaatgggc 2700 ggaagggtcg ttctgaacct ccccttccta tctccctccg gttttctgag gcgggagctg 2760 agttggcagt attgctacaa actgtctgaa gtcactaaac gttttacggt 2810 //