ID EU413669; SV 1; linear; genomic RNA; STD; VRL; 3309 BP. XX AC EU413669; XX DT 20-FEB-2008 (Rel. 94, Created) DT 20-FEB-2008 (Rel. 94, Last updated, Version 1) XX DE Turnip vein-clearing virus isolate Pet-MS RNA replicase read-through DE component gene, partial cds; and movement protein and coat protein genes, DE complete cds. XX KW . XX OS Turnip vein-clearing virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-3309 RA Sabanadzovic S., Abou Ghanem-Sabanadzovic N., Henn A., Lawrence A.; RT "Characterization of a petunia strain of turnip vein-clearing virus"; RL Unpublished. XX RN [2] RP 1-3309 RA Sabanadzovic S., Abou Ghanem-Sabanadzovic N.; RT ; RL Submitted (18-JAN-2008) to the INSDC. RL Entomology and Plant Pathology, Mississippi State University, 100 Twelve RL Lane, Mississippi State, MS 39762, USA XX DR MD5; ffecd15cd234cef4a53c270d28f6b4cd. DR RFAM; RF00225; IRES_Tobamo. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..3309 FT /organism="Turnip vein-clearing virus" FT /isolate="Pet-MS" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:29272" FT CDS <1..1871 FT /codon_start=3 FT /transl_except=(pos:387..389,aa:OTHER) FT /product="RNA replicase read-through component" FT /db_xref="GOA:B1A0S8" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:B1A0S8" FT /protein_id="ACA02824.1" FT /translation="EVVRGIREGRSVRGKGAFNPITLPLEGKILTFTQADKFELLEKGY FT KDVNTVHEVQGETYEKTAIVRLTSTPLEIISSASPHVLVALTRHTARCKYYTVVLDPMV FT NVISEMEKLSNFLLDMYKVEAGVQXQLQIDAVFRGQNLFVQTPKSGDWRDMQFYYDALL FT PGNSTILNEFDAVTMNLRDISLNVKDCRIDFSKSVQLPKEQPIFLKPKIRTAAEMPRTA FT GLLENLVAMIKRNMNAPDLTGTIDIEDTASLVVEKFWDSYVDKEFSGTNEMTMTRESFS FT RWLSKQESSTVGQLADFNFVDLPAVDEYKHMIKSQPKQKLDLSIQDEYPALQTIVYHSK FT KINAIFGPMFSELTRMLLERIDSSKFLFYTRKTPAQIEDFFSDLDSTQAMEILELDISE FT YDKSQNEFHCAVEYKIWEKLGIDEWLAEVWKQGHRKTTLKDYTAGIKTCLWYQRKSGDV FT TTFIGNTIIIAACLSSMIPMDKVIKAAFCGDDSLIYIPKGLDLPDIQAGANLMWNFEAK FT LFRKKYGYFCGRYVIHHDRGAIVYYDPLKLISKLGCKHIRDVVHLEELRESLCDVASNL FT NNCAYFSQLDEAVAEVHKTAVGGSFAFCSIIKYLSDKRLFRDLFFV" FT CDS 1874..2677 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:B1A0S9" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:B1A0S9" FT /protein_id="ACA02825.1" FT /translation="MSIVSYEPKVSDFLNLSKKEEILPKALTRLKTVSISTKDIISVKE FT SETLCDIDLLINVPLDKYRYVGILGAVFTGEWLVPDFVKGGVTISVIDKRLVNSKECVI FT GTYRAAAKSKRFQFKLIPNYFVSTVDAKRKPWQVHVRIQDLKIEAGWQPLALEVVSVAM FT VTNNVVMKGLREKVVAINDPDVEGFEGVVDEFVDSVAAFKAVDNFRKRKKKVEERDVVS FT KYKYRPEKYAGPDSFNLKEENALQHYKPESVPVLRSGVGRAHTNA" FT CDS 2601..3074 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:B1A0T0" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:B1A0T0" FT /protein_id="ACA02826.1" FT /translation="MPYNITNPNQYQYFAAVWAEPIPMLNQCMSALSQSYQTQAARDTV FT RQQFSNLLSAVVTPSQRFPDTGSRAYVNSAVIKPLYEALMKSFDTRNRIIETEEESRPS FT ASEVANATQRVDDATVAIRSQIQLLLSELSNGHGYMNRAEFEALLPWTTAPAT" XX SQ Sequence 3309 BP; 970 A; 596 C; 839 G; 904 T; 0 other; cagaagtggt gagagggatc cgtgaaggca gaagtgtgag agggaagggt gcatttaacc 60 caataacctt accgttggag ggtaaaattt tgacctttac acaagctgac aagttcgagt 120 tactggagaa gggttacaag gatgtgaaca ctgtgcacga ggtgcaaggg gagacgtacg 180 agaagactgc tattgtgcgc ttgacatcaa ctccgttaga gatcatatcg agtgcatcac 240 ctcatgtttt ggtggcgctg acaagacaca ctgcacgttg taagtattac accgttgtgt 300 tagacccgat ggtgaatgtg atttcagaaa tggagaagtt gtccaatttc cttcttgaca 360 tgtataaagt tgaagcgggg gtccaatagc aattacagat cgatgcagta ttcaggggac 420 agaacttgtt tgttcagacg cccaagtcag gagattggcg agatatgcaa ttttactatg 480 acgctcttct tcccggaaac agtactattc tcaatgaatt tgatgctgtt acgatgaatt 540 tgagggatat ttccttaaac gtcaaagatt gcagaatcga cttctccaaa tccgtgcaac 600 ttcctaaaga acaacctatt ttcctcaagc ctaaaataag aactgcggca gaaatgccga 660 gaaccgcagg tttgctggaa aatttggttg caatgatcaa aagaaacatg aatgcgccgg 720 atttgacagg gacaattgat attgaggata ctgcatctct ggtggttgaa aagttttggg 780 attcgtatgt tgacaaggaa tttagtggaa cgaacgaaat gaccatgaca agggaaagtt 840 tttctagatg gctttcgaaa caagagtcat ctacagttgg tcagttagcg gactttaact 900 ttgtggattt gccggcagtg gatgagtaca agcatatgat caagagtcaa ccaaagcaaa 960 agttagactt gagtattcaa gacgaatatc ctgcattgca gacgatagtc taccattcga 1020 aaaagatcaa tgcgattttc ggtccaatgt tttcagaact tacgaggatg ttactcgaaa 1080 ggattgactc ttcgaagttt ctgttctaca ccagaaagac acctgcacaa atagaggact 1140 tcttttctga cctagactca acccaggcga tggaaattct ggaactcgac atttcggagt 1200 acgataagtc acagaacgag ttccactgtg ctgtagagta caagatctgg gaaaagttag 1260 gaattgatga gtggctagct gaggtatgga aacaaggaca caggaaaacg accttgaaag 1320 attatacggc cggaatcaaa acatgtcttt ggtatcaaag gaaaagcggt gatgtaacaa 1380 cctttattgg taataccatc atcattgcag cctgtttgag ctcaatgatc cccatggaca 1440 aagtgataaa ggcagctttt tgtggagacg atagcctgat ttacattcct aaaggtttag 1500 acttgcctga cattcaggcg ggcgcgaacc tcatgtggaa cttcgaggcc aaactcttca 1560 ggaagaagta tggttacttc tgtggtcgtt atgttattca ccatgataga ggagccattg 1620 tgtattacga tccgcttaaa ctaatatcta agttaggttg taaacatatt agagatgttg 1680 ttcacttaga agagttacgc gagtctttgt gtgatgtagc tagtaactta aataattgtg 1740 cgtatttttc acagttagat gaggccgttg ccgaggttca taagaccgcg gtaggcggtt 1800 cgtttgcttt ttgtagtata attaagtatt tgtcagataa gagattgttt agagatttgt 1860 tctttgtttg ataatgtcga tagtctcgta cgaacctaag gtgagtgatt tcctcaatct 1920 ttcgaagaag gaagagatct tgccgaaggc tctaacgagg ttaaagaccg tgtctattag 1980 tactaaagat attatatctg tcaaggagtc ggagactttg tgtgatatag atttgttaat 2040 caatgtgcca ttagataagt atagatatgt gggtatccta ggagctgttt ttaccggaga 2100 gtggctagtg cctgacttcg ttaaaggtgg agtgacgata agtgtgatag acaagcgtct 2160 ggtgaactca aaggagtgcg tgattggtac gtacagagcc gcagccaaga gtaagaggtt 2220 ccagttcaaa ttgattccaa attactttgt gtccactgtg gacgcaaaga ggaagccgtg 2280 gcaggttcat gttcgtatac aagacttgaa gattgaggcg ggttggcagc cgttagctct 2340 agaagtagtt tcagttgcta tggtcaccaa taacgttgtc atgaagggtt tgagggaaaa 2400 ggtcgtcgca ataaatgatc cggacgtcga aggtttcgaa ggtgtggttg acgaattcgt 2460 cgattcggtt gcagcattta aagcggttga caatttcagg aagagaaaaa agaaggttga 2520 agaaagggat gtagtaagta agtataaata tagaccggag aaatacgccg gtcctgattc 2580 gtttaattta aaagaagaaa atgccttaca acattacaaa cccgaatcag taccagtact 2640 tcgcagcggt gtgggcagag cccataccaa tgcttaacca gtgcatgtcg gcgttgtcgc 2700 aatcgtacca gacacaagct gcgagagaca ctgttagaca gcaattctca aacttgttaa 2760 gtgcggttgt gacgccgagc cagcggttcc cagatacagg gtcccgggcg tatgttaact 2820 cggctgttat aaagccgttg tacgaggctc ttatgaagtc ctttgatact agaaatagga 2880 tcatagagac ggaagaggag tcacgcccat cagcttccga agtagctaat gcaacacagc 2940 gtgttgatga cgcgactgtt gccattagaa gtcaaattca gcttttgctg agtgagcttt 3000 ctaatggaca tggttatatg aatagggcag agttcgaggc tttattgcca tggactactg 3060 cgcctgctac ttaggcgtag tgcgcacgat agcgcatagt gtttttctct ccacttaaat 3120 cgaagagata aacttacggt gtaattccgt gagggtggcg taaaccaaat tacgcaatgt 3180 tttgggttcc attaaaatcg aaacccctta tttcctggat cacctgttaa cgcacgtttg 3240 acgtgtatta cagtgggaat aagtaaaagt gagaggttcg aatcctccct aaccccgggt 3300 aggggccca 3309 //