ID EU402391; SV 1; linear; genomic RNA; STD; VRL; 5683 BP. XX AC EU402391; XX DT 13-FEB-2008 (Rel. 94, Created) DT 13-FEB-2008 (Rel. 94, Last updated, Version 1) XX DE Barley yellow dwarf virus-GAV isolate 05WN7, complete genome. XX KW . XX OS Barley yellow dwarf virus GAV OC Viruses; Riboviria; Luteoviridae; Luteovirus; unclassified Luteovirus. XX RN [1] RP 1-5683 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Nucleotide sequence analysis of the genome of Barley yellow dwarf RT virus-GAV in China"; RL Unpublished. XX RN [2] RP 1-5683 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (14-JAN-2008) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, 2 West Yuanmingyuan Road, Beijing 100094, China XX DR MD5; 3f084498cb9ce6ac07bbcf96223465d8. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5683 FT /organism="Barley yellow dwarf virus GAV" FT /host="wheat" FT /isolate="05WN7" FT /serotype="GAV" FT /mol_type="genomic RNA" FT /country="China:Weinan" FT /db_xref="taxon:224578" FT CDS join(140..1156,1156..2742) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0ZT97" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0ZT97" FT /protein_id="ABY91275.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKAKSGVTEAWNDF FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQNLYSFTEVKKVETGLTKEVVKE FT KNGEETKHLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSSIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDKPIYPPRPEHDIFTETMDYFGKSIIDEVGYCKTYPAQLLANSYSA FT GKRAMYHKAIASLKTTPYQQRDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDSELALALEHQISNNIKMFVEDKMLRFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYKCLYRSSGYKKVSDEFIKNVISYGTDERLQGRRTFEDTPITNHSRM FT SYWESFGVDPKIQQIVERYYDNLTVSAQLQSVKVTTPHLQSILLSIPENHSQNDY" FT CDS 140..1159 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0ZT98" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0ZT98" FT /protein_id="ABY91276.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKAKSGVTEAWNDF FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQNLYSFTEVKKVETGLTKEVVKE FT KNGEETKHLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGF" FT CDS 2856..4832 FT /codon_start=1 FT /transl_except=(pos:3453..3455,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0ZT99" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0ZT99" FT /protein_id="ABY91277.1" FT /translation="MNSVGRRNNRRRNGPRRARRSSAVRRMVVVQPNRAGPKRRTRRRT FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT FT NVKVEFKSHASASTVGAMFIELDTSCTQSTLGSYINSFTISKSATKNFTAQQIDGKEFR FT ESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPKXVDSSTPEPSPQPQPEPKPDPQP FT TPEPQHKRFFEYVGTPYVIIQTRESSDSIAVKSMNDQSFQYIENETSEQRTVQAWWTSN FT NGVQAQAAFVFPIPAGEYSVNISCEGLQSVDHIGGNRDGYWIGLIAYQNQSGDYWGVGN FT YAGCDITNLLGTNTWRPGHEDLELNGCKFTNGQIVERDAVISFHVKAQGADPKFYLMAP FT KTMKSDKYNYVVSYGGYTDKRMEFGSISVTVDESDVEAQRYNRHASTVRKTENRDYGWM FT SVLPPYDPNQVPEQEEEQPMVDKEMDPRSPVEPPSPTSDTEAERAFDLREEELTRARLE FT YEAATESIPDAAPDILPSKSEMSSKPIDHDGRSLPKPQSKEVLGTYQGQNITPDDVPSV FT IAEKLREVNRAPSTLLYDRQPKTPKSFLSRFVETNKTSLASPGSQSSTSGMTREQASEY FT TRIRKSMGLTAAKEYKASLADTW" FT CDS 2856..3455 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0LXB1" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B0LXB1" FT /protein_id="ABY91278.1" FT /translation="MNSVGRRNNRRRNGPRRARRSSAVRRMVVVQPNRAGPKRRTRRRT FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT FT NVKVEFKSHASASTVGAMFIELDTSCTQSTLGSYINSFTISKSATKNFTAQQIDGKEFR FT ESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPK" FT CDS 2893..3357 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0ZTA1" FT /protein_id="ABY91279.1" FT /translation="MAQGEQGALAQFGEWLWSNPIEPDQNEELVDAQEEEGQILYLDQQ FT AGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTVTRSQTSRLSLNHTRPP FT LQSAQCLLNSTLRAHNQPWVATLTHSPSQNQQPKTSPPNRLTGRNSGRAR" FT CDS 4939..5070 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="GOA:Q80J47" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:Q80J47" FT /protein_id="ABY91280.1" FT /translation="MDDLHVIAVCVLSTTVFAAAVLTISAIASICGSACATANIQRV" XX SQ Sequence 5683 BP; 1713 A; 1379 C; 1353 G; 1238 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgca aaaacggtcc tctcatagcc tgactagctg agagccatcc 120 ttctatcccc accgccacca tgttctttga aattcttata ggagctagtg ccaaggcggt 180 caaagatttc atcagccact gctattctag actaaaatcc atatattatt ctttcaaacg 240 atggctgatg gaaatatctg ggcaatttaa ggcccatgac gcctttgtca acatgtgctt 300 tgggcacatg gctgacattg aagacttcga ggctgaactc gctgaagagt tcgccgagag 360 ggaggatgag gtggaagagg ccaggagtct cttgaaactg ctggtcgccc agaaagctaa 420 atccggggtg accgaggctt ggaacgactt ctttttgaag tcgaggggtg gtgtttacgc 480 accgctttct tgtgagccta ccaagcagga actagaagtc aagagcgaaa agctcgagag 540 gcttctggac gaacagcacc aattcgaggt gcgagcggcc aagaaataca tcaaagaaaa 600 aggccgcggc ttcatcaact gctggaacga cttgcgtagt cgtctcagat tggtgaaaga 660 cgtcaaggat gaggcgaagg ataacgccag agccgctgcc aagattggag cggaaatgtt 720 cgcccccgtt gacgtacaga acctctacag ctttacagag gttaagaagg tggagaccgg 780 cctcacaaag gaggtcgtaa aagaaaagaa cggcgaagaa acgaagcacc tagaacccat 840 cttggaagag gtgcggtcta tcaaggatac cgccgaagct agggacgccg cctccacttg 900 gataacagag acagtcaaat tgaaaaactc aaccctcaat gctgatgaac tgtctctcgc 960 caccatcgcc cgctacgttg aaaatgtagg ggacaaattt aaactcgaca ttgctagcaa 1020 aacatatcta aagcaatgcg cgacgatgtc tgtaccaatt ccaaccacca aggacatcaa 1080 aatgaagatg gtgttgcaga gccctgaagc acgtgccagg cgggaacgca tggacgtgct 1140 tgactctgtg ggtttttaga ggggctctgt accgcctctg gttttgagag cccatttcca 1200 attctcgggc tgccagagat tgcggtcaca gacggagccc ggctccgtaa ggttagtagt 1260 agtattagat accttagcca aacccaccta ggcttagtat ataaggcacc aaatgcctcc 1320 ctgcacaacg cgcttgtggc agtggagaga agagttttta cagtaggaaa gggggacaaa 1380 cccatttacc ccccccgccc tgagcacgac attttcactg aaacgatgga ctactttggt 1440 aagtccataa tcgacgaggt gggatactgc aagacatacc cagcgcagct cctggctaac 1500 agttacagcg caggaaaaag ggccatgtac cacaaggcca ttgcatccct gaaaacaacc 1560 ccctatcaac agagggatgc taatgtgcaa gctttcctga agaaggaaaa acattggatg 1620 accaaggaca tcgctccccg attgatatgc ccccgcagca agcggtacaa cattatccta 1680 ggaactcgtt tgaaattcaa cgagaagaag atcatgcacg ccatcgatag tgtgtttgga 1740 tcccccactg tgctttctgg ttatgacaac ttcaagcaag gaaggatcat agccaagaag 1800 tggcaaaagt ttgcatgccc cgtcgccatc ggcgtggatg ctagccgctt tgaccaacac 1860 gtgtcagagc aggcgcttaa gtgggaacac gggatataca atggaatctt cggtgatagc 1920 gagttggctc ttgcacttga acaccaaata tccaataaca tcaagatgtt cgtagaggat 1980 aagatgctta ggttcaaggt gagaggccac agaatgtccg gtgacattaa taccagcatg 2040 ggaaataagc taataatgtg cggtatgatg cacgcatatt tcaagaagct gggtgtcgaa 2100 gctgaactat gcaacaatgg agacgactgt gtcatcatca cagacagagc caatgagaag 2160 ctctttgatg gcatgtacga ccactttctc cagtatggtt tcaacatggt gaccgaaaaa 2220 ccagtttacg aactggaaca attggagttt tgccagtcaa aaccggtctc tattaatgga 2280 aaatacagaa tggtcagaag gcccgatagc ataggcaaag acagcacaac actactgagc 2340 atgctcaacc aatccgacgt caaaagctac atgtcggctg tggctcagtg tggtttggtg 2400 ctaaacgctg gagtacccat actcgaaagc ttctataaat gcctatatag aagctctggg 2460 tacaagaaag tgagtgatga attcatcaaa aacgtcattt cgtatggaac agatgagaga 2520 ctacaaggta gacgtacctt tgaagacaca cctatcacta atcatagtag gatgtcctac 2580 tgggaatcat tcggagttga ccctaagata caacaaattg tcgagcggta ctacgacaat 2640 cttacggtaa gtgcccaact ccagagcgtg aaggtgacta ctccacatct gcaatcaata 2700 ctactttcca taccggaaaa ccactcacaa aacgactatt aattaccaaa tcttagctgg 2760 gtttggaata gggtttatag tttctattcc ctgtacatta gctctctcct actttatcta 2820 caataaagtt tctgacacca ctagggaggt ggtgaatgaa ttcagtaggc cgtagaaata 2880 accgcaggag aaatggccca aggagagcaa ggcgctctag cgcagttcgg agaatggttg 2940 tggtccaacc caatcgagcc ggaccaaaac gaagaactcg tcgacgcaca agaggaggag 3000 gggcaaatct tatatctgga ccagcaggca ggactgaggt attcgtattc tcagtcaacg 3060 accttaaggc caactcctca gggacaatca agttcggtcc cgacctttcg caatgcccag 3120 cgctttcagg tggaatactc aagtcctacc accgttacaa gatcacaaac gtcaaggttg 3180 agtttaaatc acacgcgtcc gcctctacag tcggcgcaat gtttattgaa ctcgacactt 3240 cgtgcacaca atcaaccttg ggtagctaca ttaactcatt caccatctca aaatcagcaa 3300 ccaaaaactt caccgcccaa cagattgacg ggaaggaatt cagggagagc acggtgaatc 3360 aattttatat gctatacaag gcaaatggta gtacatctga taccgccggg caattcatca 3420 ttacaatacg cgttgccaac atgactccca aataggtaga ctcctcaaca ccagagcctt 3480 caccccaacc ccaaccagag cccaaacccg atccgcagcc aacaccagag cctcaacaca 3540 aacggttttt cgagtacgta ggaacgccct atgttatcat acaaactagg gagagttcgg 3600 atagcattgc cgtcaagtca atgaatgatc aatcctttca gtacatcgaa aacgaaactt 3660 ctgagcaaag aaccgttcag gcatggtgga cctccaacaa cggcgtccaa gcgcaagcag 3720 catttgtatt tcctataccc gctggagagt atagtgttaa tatttcttgt gaaggtctac 3780 aatcagtgga ccacattgga ggaaaccgag acggatattg gataggttta atagcctacc 3840 aaaatcaaag cggggattat tggggcgtgg gcaactatgc cggctgtgat ataaccaatc 3900 ttctaggaac aaacacttgg cgtccaggcc atgaagattt ggaattaaac ggttgcaaat 3960 tcactaatgg gcagatagtt gaaagagacg ctgtgatatc cttccacgtt aaagctcagg 4020 gtgctgaccc caagttttac ctcatggcac ccaagaccat gaagtctgac aagtacaact 4080 atgttgtctc gtatggaggt tacacagaca aaagaatgga atttggatcc atatctgtca 4140 ctgtggatga atccgatgtt gaggcacagc gctacaacag gcacgctagc acggttagga 4200 aaacagaaaa ccgagattat gggtggatga gtgttctacc accctatgat cctaaccaag 4260 tgccggagca ggaggaagaa caaccaatgg tcgacaagga gatggatcca agatctcctg 4320 tcgaaccccc ttccccaacc tccgacactg aggctgaaag agcctttgac ttgagagagg 4380 aagaacttac gagggccaga cttgaatacg aggcagccac tgaatccata cctgatgctg 4440 ccccggacat tttaccctca aaatctgaaa tgagcagtaa accaatagac catgatggaa 4500 ggtctttacc aaaaccccag tcaaaagaag tcctcggcac ttaccaaggc cagaacatca 4560 caccagatga tgttccttct gtcatagctg aaaaattgcg tgaagtgaac agagcaccat 4620 ctactctgct ttacgacagg cagccaaaaa caccaaaaag ctttctttcc cgtttcgtag 4680 aaaccaataa aactagcttg gcttcccctg gttcacagtc ttccacgtca ggaatgacac 4740 gagaacaagc ctcagaatac accaggatta ggaagtcaat gggcctcacg gcagctaagg 4800 agtacaaagc cagtttagct gacacatggt gaagatcaac accactcgca aattcggatc 4860 ctgggaaaca ggcagaactt cggttcgtaa gctcgggtaa actagtcctt taccgtcgta 4920 tcgtactttg tgtggccgat ggatgatcta catgtgatag cagtctgtgt gctgtccacg 4980 acagtgttcg cagcggcagt actcacaatt agcgcaattg ctagtatttg cggcagtgca 5040 tgtgcaactg ccaacattca aagggtttaa tctgtgatac aacccaccaa aaatacacgg 5100 ggaacaacag gttcagcgag ggggctaacg acccccagca attggctggt tctgggagac 5160 ttaaataacc tcctatagaa cgaagtggaa tccccccact gatcaaattg ggaagcatgc 5220 ttctgtgcta tacactgccc cagaggacac tgggtaaaca aatctaacca cccaactcaa 5280 tgaaatgaga gcggaggtgg cggggtgggt gacctcgaga tgtgcacccg atcgtcagga 5340 ttgaagacgt taaaactcaa cgacctagtg caagtcgtta agctgactcg ggtggataca 5400 ccacacccgg cccaacttgg aggcataccc acgatacgaa acgtgggttt cttggagcca 5460 ctacctgtga tgcaaggtag ggtatgggtc ttagcaagcc ctgcgccagg aaatggacat 5520 aaaccatagc aatcccccaa gtcatctcgg caaaccacag gtgaaccgtg ccacaggcct 5580 gactaccgaa aggaaaatca gtatccaaca cagcaatgtg ttgggggtca cacccttcgg 5640 ggtactctta acgctgacac tcgaaagagc agttcggcaa ccc 5683 //