ID EU402390; SV 1; linear; genomic RNA; STD; VRL; 5683 BP. XX AC EU402390; XX DT 13-FEB-2008 (Rel. 94, Created) DT 13-FEB-2008 (Rel. 94, Last updated, Version 1) XX DE Barley yellow dwarf virus-GAV isolate 05WN5, complete genome. XX KW . XX OS Barley yellow dwarf virus GAV OC Viruses; Riboviria; Luteoviridae; Luteovirus; unclassified Luteovirus. XX RN [1] RP 1-5683 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Nucleotide sequence analysis of the genome of Barley yellow dwarf RT virus-GAV in China"; RL Unpublished. XX RN [2] RP 1-5683 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (14-JAN-2008) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, 2 West Yuanmingyuan Road, Beijing 100094, China XX DR MD5; aa2e347666189b2728d87f1393c3b257. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5683 FT /organism="Barley yellow dwarf virus GAV" FT /host="wheat" FT /isolate="05WN5" FT /serotype="GAV" FT /mol_type="genomic RNA" FT /country="China:Weinan" FT /db_xref="taxon:224578" FT CDS join(140..1156,1156..2742) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0ZT91" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0ZT91" FT /protein_id="ABY91269.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE FT VNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDEPIYPPRPEHDIFTDTMDYFGKSIIDEVGYCKTYPAQLLANSYSA FT GKRAMYHKAIASLKTTPYQQRDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDSELALALEHQISNNIKMFVEDKMLRFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYKCLYRSSGYKKVSDEFIKNVISYGTDERLQGRRTFEDTPITNHSRM FT SYWESFGVDPKIQQIVERYYDNLTVSAQLQSVKVTTPHLQSILLSIPENHSQNDY" FT CDS 140..1159 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0ZT92" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0ZT92" FT /protein_id="ABY91270.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE FT VNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGF" FT CDS 2856..4832 FT /codon_start=1 FT /transl_except=(pos:3453..3455,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0ZT93" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0ZT93" FT /protein_id="ABY91271.1" FT /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRRT FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT FT NVKVEFKSHASASTVGAMFIELDTSCSQSTLGSYINSFTLSKSATKNFTAQQIDGKEFR FT ESTVNQFYMLYKANGITSDTAGQFIITIRVANMTPKXVDSSTPEPTPQPQPEPKPDPQP FT TPEPQHKRFFEYVGTPYVIIQTRESSDSIAVKSMNDQSFQYIENETSEQRTVQAWWTSN FT NGVQAQAAFVFPIPAGEYSVNISCEGLQSVDHIGGNRDGYWIGLIAYQNQSGDYWGVGN FT YAGCDITNLLGTNTWRPGHEDLELNGCKFTNGQIVERDAVISFHVKAQGADPKFYLMAP FT KTIKSDKYNYVVSYGGYTDKRMEFGSISVTVDESDVEAQRYNRHTSTVRKTENRDYGWM FT SVLPPYDPNQVPEQEEEQPMVDKEMYSRSPVEPPSPTSDTEAERAFDLREEELTRARLE FT YEAATESIPDAAPDILPSKSEMSSRPIDHDGRSLPKPQSKEVLGTYQGQNITPDDVPPV FT IAEKLREVNRAPSTLLYDRQPKTPKSFLSRFVETNKTSLASPGSQSSTSGMTREQASEY FT TRIRKSMGLTAAKEYKASLADTC" FT CDS 2856..3455 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0ZT94" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B0ZT94" FT /protein_id="ABY91272.1" FT /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRRT FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT FT NVKVEFKSHASASTVGAMFIELDTSCSQSTLGSYINSFTLSKSATKNFTAQQIDGKEFR FT ESTVNQFYMLYKANGITSDTAGQFIITIRVANMTPK" FT CDS 2893..3357 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q80J48" FT /protein_id="ABY91273.1" FT /translation="MAQGEQGALAQFGEWLWSNPIEPDQNEELVDAQEEEGQILYLDQQ FT AGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTVTRSQTSRLSLSHTRPP FT LQSAQCLLNSTLRAHNQPWVATLTHSPSQNQQPKTSPPNRLTGRNSGRAR" FT CDS 4939..5070 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0ZT96" FT /protein_id="ABY91274.1" FT /translation="MDDLHVIAVCVLSTTVFAAAVLTISAVASICGSACATANIQRV" XX SQ Sequence 5683 BP; 1706 A; 1374 C; 1352 G; 1251 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgca agaacggtcc tctcattgcc tgactagctg agagccatcc 120 ttctatcccc accgccacca tgttctttga aatacttata ggagctagtg ccaaggcggt 180 caaggatttc atcagccact gttactctag actgaaatct atatattatt ctttcaaacg 240 atggctgatg gaaatatctg ggcaatttaa ggcccatgac gcctttgtca acatgtgctt 300 tgggcacatg gctgacattg aagacttcga ggctgaactc gctgaagagt tcgccgagag 360 ggaggatgag gtggaagagg ccaggagcct cttgaaactg ctggtcgccc aaaaatctaa 420 atccggggtg acggaggctt ggaacgactt ctttttgaag tcgaggggtg gtgtttacgc 480 accgctctct tgtgagccca ccaagcagga actagaagtc aagagcgaga agctcgagag 540 gcttctagac gaacagcacc aattcgaggt gcgagcggcc aagaaataca tcaaagaaaa 600 gggccgcggc ttcatcaact gctggaacga cttgcgtagc cgtctcagat tggtgaagga 660 tgtcaaggat gaggcgaagg acaacgccaa agccgctgca aagattgggg cggaaatgtt 720 cgcccccgtt gacgtgcagg acctctacag ctttacagag gtcaagaagg tggagaccgg 780 cctcacaaag gaggtcgtaa aggaagtgaa cggtgaagaa acgaaacgcc tcgaacctat 840 tttggaagag gtgcgatcca tcaaggacac cgccgaagct agggacgccg cctccacttg 900 gataacagag acagtcaaat tgaaaaattc aacccttaac gctgatgaac tgtctctcgc 960 caccatcgcc cgctacgttg aaaatgtagg ggacaaattt aaactcgaca ttgccagcaa 1020 gacataccta aagcaatgcg caacgatgtc tgtaccaatt ccaaccacca aggacatcaa 1080 aatgaagatg gtgttgcaga gtcctgaagc acgtgccagg cgggaacgca tggacgtgct 1140 tgactctgtg ggtttttaga ggggctctgt accgcctctg gttttgagag cccatttcca 1200 attctcgggc tgccagagat tgcggtcaca gacggagccc ggctccgtaa ggttagtagc 1260 aatattagat accttagcca aacccactta ggtttagtat ataaggcacc aaatgcctcc 1320 ctgcacaacg cgcttgtggc agtggagaga agagttttta cagtaggaaa gggggacgaa 1380 cctatttacc ccccccgccc tgagcacgac attttcactg atacaatgga ctactttggt 1440 aagtccataa tcgacgaggt gggatactgc aagacatacc cagcgcaact cctggctaac 1500 agctatagcg caggaaaaag ggccatgtat cacaaagcca ttgcatccct gaaaacaacc 1560 ccctatcagc agagggatgc taatgtgcaa gctttcctca agaaggaaaa acattggatg 1620 accaaggaca tcgctccccg attgatatgc ccccgcagca agcggtacaa cattatccta 1680 ggaactcgtt tgaaattcaa cgagaagaag atcatgcacg ccatcgatag tgtgtttgga 1740 tcccccactg tgctttctgg ttatgataac ttcaagcaag gaagaatcat agccaagaag 1800 tggcaaaagt ttgcatgccc cgtcgctatc ggcgtggatg ctagccgctt tgaccaacac 1860 gtgtcagagc aggcgcttaa gtgggaacac gggatataca atggaatctt cggtgatagc 1920 gaattggctc ttgcacttga acaccaaata tccaacaaca tcaaaatgtt cgtagaggac 1980 aaaatgctta ggttcaaggt tagaggccat agaatgtccg gtgacattaa taccagcatg 2040 ggaaacaagc tgataatgtg cggcatgatg cacgcatatt tcaagaagct gggtgttgaa 2100 gcagaacttt gtaacaatgg agacgactgt gtcatcatca cggacagagc caatgagaag 2160 ctctttgatg gcatgtacga tcacttcctc cagtatggtt tcaacatggt gaccgaaaaa 2220 ccagtttacg aactggaaca attggagttt tgccagtcaa aaccggtctc tattaatgga 2280 aaatacagaa tggttagaag gcccgatagc ataggcaaag acagcacaac actactgagc 2340 atgctcaacc aatccgacgt caaaagttac atgtcggctg tggctcagtg tggtttggtg 2400 cttaatgctg gagtacccat actcgaaagc ttctataaat gcctatatag aagctctggg 2460 tacaagaaag tgagtgatga attcatcaaa aacgtcattt cgtatggaac agatgagaga 2520 ctacaaggta gacgtacctt tgaagacaca cctatcacta atcatagtag gatgtcctac 2580 tgggaatcat tcggagttga ccctaagata caacaaattg tcgagcggta ctacgacaat 2640 cttacggtga gtgcccaact ccagagcgtg aaggtgacta ctccacatct gcaatcaata 2700 ctactttcca taccggaaaa ccactcacaa aacgactatt aattaccaaa tcttagctgg 2760 gtttggaata gggtttatag tttctattcc ctgtacatta gctctctcct actttatcta 2820 caataaagtt tctgacacca ctagggaggt ggtgaatgaa ttcagtaggc cgtagaaata 2880 accgcaggag aaatggccca aggagagcaa ggcgcgctgg cgcagttcgg agaatggttg 2940 tggtccaacc caatcgagcc ggaccaaaac gaagaactcg tcgacgcaca agaggaggag 3000 gggcaaatct tatatctgga ccagcaggca ggactgaggt attcgtattc tcagtcaacg 3060 accttaaggc caactcctca gggacaatca agttcggtcc cgacctttcg caatgcccag 3120 cgctttcagg tggaatactc aagtcctacc accgttacaa gatcacaaac gtcaaggttg 3180 agtttaagtc acacgcgtcc gcctctacag tcggcgcaat gtttattgaa ctcgacactt 3240 cgtgctcaca atcaaccttg ggtagctaca ttaactcatt caccctctca aaatcagcaa 3300 ccaaaaactt caccgcccaa cagattgacg ggaaggaatt cagggagagc acggtgaatc 3360 aattttacat gctatacaag gcaaatggta ttacatctga taccgccggg caattcatca 3420 ttacaatacg tgttgccaac atgactccca aataggtaga ctcctcaaca ccagagccta 3480 caccccaacc ccaaccagag cccaaacctg atccgcagcc aacaccagag cctcaacaca 3540 aacggttttt cgagtacgta ggaacgccct atgttatcat acaaactagg gagagttcgg 3600 atagcattgc cgtcaagtca atgaatgatc aatcctttca gtacatcgaa aacgaaactt 3660 ctgagcaaag aaccgttcag gcatggtgga cctccaacaa cggcgtccaa gcgcaagcag 3720 catttgtatt tcctataccc gctggagagt atagtgttaa tatttcttgt gaaggtctac 3780 aatcagtgga ccacattgga ggaaaccgag acggatattg gataggctta atagcctacc 3840 aaaatcaaag cggggattat tggggcgtgg gcaactatgc tggctgtgat ataaccaatc 3900 ttctaggaac aaacacttgg cgtccaggcc atgaagattt ggaattaaac ggctgcaaat 3960 tcactaatgg acagatagtt gaaagagacg ctgtgatatc cttccatgtt aaagctcagg 4020 gtgctgaccc caagttttac ctcatggcac ccaagaccat aaagtctgac aagtataact 4080 atgttgtctc gtatggaggt tacacagaca aaagaatgga atttggatcc atatctgtca 4140 ctgtggatga atccgatgtt gaggcacagc gctacaacag gcacactagc acggttagga 4200 aaacagaaaa ccgagattat gggtggatga gtgttctacc accctatgat cctaaccaag 4260 tgccggagca agaggaagaa caaccaatgg tcgacaagga gatgtattca agatctcctg 4320 tcgaaccccc ttccccaacc tccgacactg aggctgaaag agcctttgac ttgagagagg 4380 aagaacttac gagggccaga cttgaatacg aggcagccac tgaatccata cctgatgctg 4440 ccccggacat tttaccctca aaatctgaaa tgagcagtag accaatagac catgatggaa 4500 ggtctttacc aaaacctcag tcaaaagaag tcctcggcac ttaccaaggc cagaacatca 4560 caccagatga tgttcctcct gtcatagctg aaaaattgcg tgaagtgaac agagcaccat 4620 ctactctgct ttacgacagg cagccaaaaa caccaaaaag ctttctttcc cgtttcgtag 4680 aaaccaataa aactagcttg gcttcccctg gttcacagtc ttccacgtca ggaatgacaa 4740 gagaacaagc ctcagaatac accaggatta ggaagtcaat gggcctcacg gcagctaagg 4800 agtacaaagc cagtctagct gacacatgct gaagatcaac accactcgca aattcggatc 4860 ctgggaaaca ggcagaactt cggttcgtaa gctcgggtaa actagtcctt taccgtcgta 4920 tcgtactttg tgtggccgat ggatgatcta catgtgatag cagtctgtgt gctgtccacg 4980 acagtgttcg cagcggcagt actcacaatt agcgcagttg ctagtatttg cggcagtgca 5040 tgtgcaactg ccaacattca aagggtttaa tctgtgatac aacccaccaa aaatacacgg 5100 ggaacaacag gttcagcgag ggggctaacg acccccagca attggctggt tctgggagac 5160 ttaaataacc tcctatagaa cgaagtggaa tccccccact gatcaaattg ggaagcatgc 5220 ttctgtgcta tacactgccc cagaggacac tgggtaaaca aatctaacca cccaactcaa 5280 tgaaatgaga gcggaggtgg cggggtgggt gacctcgtga tgtgcacccg atcgtcagga 5340 ttgaagacgt taaaactcaa cgacctagtg caagtcgtta aactgactcg ggtggataca 5400 ccacacccgg cccaacttgg aggcataccc acgatacgaa acgtgggttt cttggagcca 5460 ctacctgtga tgcaaggtag ggtatgggtc ttagcaagcc ctgcgccagg aaatggacat 5520 aaaccatagc aatcccccaa gtcatctcgg caaaccacag gtgaaccgtg ccacaggcct 5580 gactaccgaa aggaaaatca gtatccaaca cagcaatgtg ttgggggtca cacccttcgg 5640 ggtactctta acgctgacac tcgaaagagc agttcggcaa ccc 5683 //