Dbfetch
ID EU391643; SV 1; linear; genomic RNA; STD; VRL; 6714 BP. XX AC EU391643; XX DT 17-MAY-2008 (Rel. 95, Created) DT 17-MAY-2008 (Rel. 95, Last updated, Version 1) XX DE Tulane virus nonstructural polyprotein, capsid protein, and minor DE structural protein VP2 genes, complete cds. XX KW . XX OS Tulane virus OC Viruses; Riboviria; Caliciviridae; Recovirus; Recovirus A. XX RN [1] RP 1-6714 RX DOI; 10.1128/JVI.00070-08. RX PUBMED; 18385231. RA Farkas T., Sestak K., Wei C., Jiang X.; RT "Characterization of a rhesus monkey calicivirus representing a new genus RT of Caliciviridae"; RL J. Virol. 82(11):5408-5416(2008). XX RN [2] RP 1-6714 RA Farkas T., Sestak K., Wei C., Jiang X.; RT ; RL Submitted (10-JAN-2008) to the INSDC. RL Infectious Diseases, CCHMC, 3333 Burnet Avenue, Cincinnati, OH 45230, USA XX DR MD5; b7f24be392e00cfbad818ccd76857cc0. DR EuropePMC; PMC2395209; 18385231. DR EuropePMC; PMC2573278; 18787011. DR EuropePMC; PMC2888095; 19889933. DR EuropePMC; PMC2919043; 20554772. DR EuropePMC; PMC3364207; 22666426. DR EuropePMC; PMC3376821; 22709854. DR EuropePMC; PMC3508507; 23154881. DR EuropePMC; PMC3545077; 23141588. DR EuropePMC; PMC4143647; 24662519. DR EuropePMC; PMC4178592; 25015883. DR EuropePMC; PMC4277584; 25362063. DR EuropePMC; PMC4495214; 26025893. DR EuropePMC; PMC4609679; 26292294. DR EuropePMC; PMC4928471; 27375966. DR EuropePMC; PMC5906594; 29706939. XX FH Key Location/Qualifiers FH FT source 1..6714 FT /organism="Tulane virus" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:512169" FT CDS 15..4358 FT /codon_start=1 FT /product="nonstructural polyprotein" FT /db_xref="GOA:B2Y6C9" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001665" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013614" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B2Y6C9" FT /protein_id="ACB38131.1" FT /translation="MDTSIDSVLSDTSPISGADVQKLIFGNTQPVSYDRRPEPKLGQVI FT VLDEGDCFHYAIYIEKGLLFSTGGMIGNGAFRLNGLTHPWGTLDLFGPEDKTFYQNKIG FT EKYPYSITRSNCLHSILQTIGVSYVHYKDKPLPAQFYTHVQDWNENRYDVGGTKSGWTQ FT QLLEIVYLIVKDVNWAKICMDFKPLNLWHNWKTMKPTFKGVLAFLTRVAELWGINISSL FT ITFLTSSLIPQSPFSPSFLMKVVLGALGFCTSYIFKKSLNAFSSVLRNFNKFIQNWTEF FT GTHSEFGVRILETITGTIPPWKPHQESISEVLDDLTHGKVQTGDDVSTRLQRLSDTIKD FT LSVMACDPSAPPEVAQAIKQANDVKRALEKTLMNTAHRRRPIVIVLAGPPGCGKTTFAK FT HLAQHCAKELKTGIYSHTPGVDHWDAYDNQGVMIWEDFGATNPEEERKLLQRLADTMPV FT TLNCDKIENKGKFFTSTIIILTTNLEDISSGNARMATLRRVDFHYHVSSFAVEHWQKGG FT CNGPKPYKDDFSHLTIRQLPKFATNFHGNTLFGQWNPQPVSPNTVKANTLAVWKMQSDE FT YPEQPVGWLMLQLGCSYFSGLKHVNDLRRGVIPRIAYTGGDIKCTVMGYKLDLYSLDGY FT LTGTVEKGDTKISNEVFYDCETGHEVKVDSTPYDIRLNEWKMGVSLHWLLTKLLNFFLK FT ANAVQDSNDTAQALSVFEAKGKTKRGRGARKLKAKVSRRYKFSPQEYNEFLKRREDAAQ FT RGIVYTVDDFLDDIGYNTDEEDDEWWDPDGEFKQKHDTNYEPSDDYYDEGYVCSFVFPA FT TSGGVKKGCATQISGSKFLTATHVAKSCDKIRGLPFKIIKIDGELCLVDVPGVKSQTKL FT EVSFPAIGDVVNLCPSRGSQRPNIPVVVRSIGNTNIAGKFLNVFTGTVVAAGKKSDGLG FT SEPGDCGSPYLKFVNGKPTLVGIHTAGSYTTNQVAGLVIPSRFNLEGKTTYVPNKTPPE FT TTQIWYTKYSEEVNAEMHPPLVGTKDPRNPIPTSEILSEMFKPYLTPNPGRVNQADLLA FT AAEAVRVKLNALVKTRIDLSAQEAFETLDPSTSSGYPLYCKKDRSLPGVEATITRVQNW FT LDGKGQLHRPIYTAALKDEPVKQSKIDDGKKRLLWCAPLETSIACAALMTDICAQLKIM FT RGEWPGKVGMNPTVEWWFLDQQFGPNVLCVDYSRWDSTMIQSIYEIGVKTLFGLSNHPK FT APELIDLLCQPRKVIVNDELRTVYQGLPSGIPTTSLLNCVCHWIASTIAIAYAAKIPIA FT EAVNWPLAVYGDDEVINCPCSNFAVRYANEMRRMGFHPTNPDKSEFFHPIHKSKMEFLS FT RTTQYVGGRCVGALKKTSIERQLYLTRGPQHNNPLEIGFPGPWFGEQLMCVMGEASLHG FT EQYFNEIKDKCARAAHLAHVKFEPWPFWPTFLWATQNDIGCSGFL" FT CDS 4380..5984 FT /codon_start=1 FT /product="capsid protein" FT /note="structural protein VP1" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR013643" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B2Y6D0" FT /protein_id="ACB38132.1" FT /translation="MENSKTEQVTGATGITQSTVTAPLPEAVSSLSLAPTVNALDPWVY FT LNQTEVPGGTFTVSSATQPGSVLLELEISPELNLYTSHLFRMYAGWSGGFSLKLLVAGN FT AFSAGKLIAAIIPPNIEVPNSAYLLTGFPHEILDFRTADSMEIIAPDIKNIDYHFRGDK FT LGKLVVMVYSPLRSTSADFEIEIKLTSAPLPDFKFTMLVPPIQNNALPIWSIPQAPPYS FT MVNPRSPLTPVVELYINSSYATCNHQLGRYTIYQGAIGNSTFNPSGAWTATCTAEAGSV FT TGNPNWRYALLDLPDNPTFDPTLPPVPRGFCDWGSGVKSGNKQHLVCFTGKKFAGGFQD FT VDAHMWDYGDNETVGLDNTYQRTIYISDPSLEKDAQYLVIPMGVSGAANDDTVQVAPNC FT YGSWDYAPTVAPPLGEQFVWFRSQLPASKTTTTSGVNSVPVNVNALMSPDLIRSAYASG FT FPLGKVALLDYVLFGGSVVRQFKLYPEGYMTANTTGSNTGFIIPADGYFRFNSWVSPSF FT MISSVVDLNLQTAVVFR" FT CDS 5984..6640 FT /codon_start=1 FT /product="minor structural protein VP2" FT /db_xref="InterPro:IPR004278" FT /db_xref="UniProtKB/TrEMBL:B2Y6D1" FT /protein_id="ACB38133.1" FT /translation="MAGAAFASGLGQAAGGIFGSLISGAIQAGLNEQQFNHNKALAEQQ FT FGYNLQLAQQNATLTKDINQFNQQLELSKYTNAGFSLADAALMSKSLSSGLSPTRVLTS FT AGVKVYASGAPTSYLTSGKQISSGIQTMHSALSAKPSKTPTVYKWVNNPLNYDTLSIGS FT EVSSTVPTLSRSSSVSSKTPTLSRSSSISSISSGSLSRFSTWGSYMDYKMPLNKP" XX SQ Sequence 6714 BP; 1841 A; 1648 C; 1484 G; 1741 T; 0 other; gggtgactag agctatggat acgtccatag attctgtgtt atctgacacc agccccataa 60 gtggggctga tgtacaaaaa cttatatttg gaaatacaca accagtctcc tatgacagga 120 gaccagaacc aaaattaggt caggtcatcg tgctcgatga gggtgactgc tttcactatg 180 caatttacat cgagaaaggc ctcctatttt caacaggagg catgattgga aacggagcat 240 tccgtctcaa tggcctgacc catccctggg gcacattgga tctttttggc ccagaggata 300 aaacgttcta tcaaaacaag attggggaga aataccccta ctcaatcact agaagcaatt 360 gtctgcactc aatcttgcaa accattgggg tgtcatatgt acattacaaa gataagcctt 420 taccagccca gttttacaca catgtccaag attggaatga aaataggtac gacgtcggag 480 ggaccaaaag cggatggaca caacaactcc tcgagatcgt gtaccttatt gtcaaagatg 540 tcaattgggc aaagatttgc atggatttca agccattgaa cctttggcac aattggaaaa 600 ccatgaaacc aacattcaag ggtgtgttag cattcctgac aagggttgct gaactctggg 660 gcataaacat atccagtttg atcacatttc ttacctcatc actgatccca cagtcaccat 720 tttccccatc tttcttaatg aaagtggttt tgggtgcctt gggtttttgc acttcataca 780 tttttaagaa atccctgaat gctttttcct cagtgttgcg gaacttcaat aagttcatcc 840 agaattggac cgaatttggc acacactcag aatttggtgt gcgcatcctt gagacaataa 900 caggcacaat acccccttgg aaacctcacc aggaatcaat atctgaagtt ctggacgacc 960 tcacacacgg taaagtccaa acaggtgatg atgtttctac ccggctccaa aggttgagcg 1020 acactatcaa agatctgagt gtcatggctt gtgatccctc tgcaccgccc gaagttgcgc 1080 aagctataaa gcaggcaaat gatgttaaaa gagcattgga aaagaccctt atgaacactg 1140 cccacaggcg tcgtccaatt gtaattgtgc ttgctggtcc acccggttgt ggcaagacaa 1200 cctttgcgaa gcatttggct caacactgtg caaaagaact caaaactggc atatatagtc 1260 acactcccgg agtagaccat tgggatgcct atgacaatca gggtgttatg atttgggagg 1320 attttggggc cacaaatcct gaagaagagc gaaaactact tcagagactt gctgacacca 1380 tgccagtcac actcaattgt gacaaaattg agaacaaagg taaattcttt acatccacta 1440 taataatctt gaccacaaac ttggaggaca tctcgagcgg gaatgctcgt atggcaacac 1500 tccgtagggt ggacttccac taccatgtct catccttcgc ggttgagcac tggcagaagg 1560 ggggttgcaa cggaccaaag ccatacaaag atgattttag ccacctcact atcaggcaat 1620 tacctaagtt tgcaacaaat ttccatggaa acactctgtt tgggcagtgg aacccgcaac 1680 ctgtgtcgcc taacactgtt aaagccaaca ctcttgctgt ttggaaaatg caatcagatg 1740 aatatccaga gcaacccgtg ggttggctca tgctccagtt gggatgctcc tacttctctg 1800 gactcaagca tgtgaacgat cttcgcagag gggtcatacc acgcattgca tacacagggg 1860 gggacattaa gtgtacagtc atggggtata aactagatct atattccctc gatggatacc 1920 tcactggtac agtggagaaa ggagacacca agatatccaa tgaggtattc tatgactgtg 1980 agactgggca tgaggtgaaa gtcgactcca caccatacga catccgcctc aatgaatgga 2040 aaatgggagt gtctctccac tggttgctga ccaagttgct caacttcttc ctcaaagcaa 2100 atgctgtcca agattccaac gacacagcac aagcacttag cgtgtttgag gccaagggca 2160 agacaaaaag gggtcgaggg gcacgcaaac tcaaagcaaa ggtgtctcgc cgctacaagt 2220 tctctccaca ggagtacaat gaatttctca aaaggagaga agatgctgct cagcgaggca 2280 tagtgtacac agttgatgac ttcctagatg acattggcta caacactgat gaagaagatg 2340 atgagtggtg ggatccggat ggtgagttca aacagaagca tgatactaac tatgaaccca 2400 gtgatgatta ttacgacgag ggatacgtgt gttcttttgt cttccctgca acttctggtg 2460 gggttaagaa aggctgtgcc acgcagatca gtggtagtaa gtttctcaca gccacacacg 2520 ttgcaaaatc atgtgacaaa attcggggcc tccctttcaa gataatcaaa attgatggtg 2580 aattatgtct tgttgatgtc cctggtgtta aatcccaaac caaacttgag gtttcattcc 2640 cggccattgg tgacgttgtc aacttgtgtc cctcgagggg atctcaaagg ccaaacatcc 2700 ccgtggttgt gcgcagtatt ggaaacacaa acattgctgg gaaattcctc aacgtcttca 2760 caggtacagt tgtggcagct gggaagaaat ctgacggcct cgggtctgaa ccaggagact 2820 gtggctcacc atatcttaaa tttgttaatg gaaaaccaac tcttgtaggc attcacacag 2880 caggcagcta cactaccaac caggttgcag gcttagtgat accttctaga ttcaaccttg 2940 aagggaaaac aacatatgtt cccaacaaaa ctccacctga gaccacccag atttggtaca 3000 ccaaatattc agaggaagtt aatgctgaga tgcacccgcc gcttgtagga actaaagacc 3060 caagaaaccc cataccaacc agtgaaatcc tcagtgagat gttcaaaccc tacttgactc 3120 caaatccagg aagagtgaac caagcagatc tacttgcagc tgcagaggct gttcgtgtta 3180 aactcaacgc acttgtgaag acacgaatag atttgtccgc ccaagaggca tttgagacac 3240 ttgatccatc aacctcatca ggataccccc tatactgtaa gaaggatagg tcacttccag 3300 gagttgaagc aacaatcaca agagttcaga attggcttga tggcaaagga cagctccata 3360 gacccatata tacagctgca ctcaaggatg aacctgtcaa gcaatccaag attgatgacg 3420 ggaagaagcg cttgctgtgg tgtgcgccac ttgaaacttc catcgcttgt gcagccctca 3480 tgacagacat ctgtgcccag cttaagatta tgagaggtga atggcctggc aaagtcggga 3540 tgaacccgac tgtggaatgg tggttccttg accagcaatt tggtccaaat gtcctctgtg 3600 tagattatag tagatgggat tcaaccatga tacagtcaat ctatgagatt ggtgtcaaaa 3660 cactctttgg actctcaaac caccccaaag ccccagagtt gattgacctg ctgtgtcaac 3720 cacgcaaggt catcgtcaac gatgaactca gaactgttta tcaaggcctt ccctctggga 3780 tacccacaac atcattgcta aattgtgtgt gccactggat agctagcacc atagccattg 3840 cctatgcggc gaagatcccc attgctgaag ctgttaactg gccacttgct gtgtacggag 3900 atgatgaggt catcaactgt ccctgttcta actttgcagt aaggtatgca aatgaaatgc 3960 gtcggatggg atttcacccg accaaccctg acaaatcaga gtttttccat cccattcaca 4020 agtccaagat ggagtttttg tcccgcacga cccagtatgt gggtggtagg tgcgttgggg 4080 cgttgaagaa gacctcaata gagcgccaac tgtaccttac ccgtgggcca caacataaca 4140 atccattaga aattggcttc ccagggccgt ggttcggtga gcaactcatg tgtgttatgg 4200 gagaagcatc tctccacggt gaacagtatt tcaatgagat taaagacaag tgtgctcgcg 4260 cagcgcactt agctcacgtc aagtttgaac cctggccctt ctggcccacc ttcttgtggg 4320 ccacgcaaaa tgatattggt tgttctggat tcttgtgatt gatcacaatt gtcatagaca 4380 tggaaaacag caaaactgaa caagtgactg gtgccactgg tatcacccag agtaccgtca 4440 cagctcccct tcctgaggct gtctcttcac tctccttggc acccactgtg aatgcactgg 4500 atccatgggt ttacctcaat caaaccgagg tgcctggagg aactttcact gtatctagtg 4560 ctacacaacc tggctctgtt ctacttgagc ttgaaatctc tcctgaactc aacctctaca 4620 catctcattt gtttcgcatg tatgctggtt ggtctggtgg cttctcactc aagcttcttg 4680 tggcaggcaa tgccttctct gctggcaaac tcattgcagc cattatacca cccaatatag 4740 aagtgccaaa ctctgcttac ctcctcaccg gctttcctca tgagatcctg gatttcagaa 4800 cagctgattc catggagatc attgcacctg acatcaaaaa cattgattac cacttcagag 4860 gtgataaatt gggtaaattg gttgttatgg tgtattcacc gttgagatca acttcagctg 4920 actttgagat tgaaatcaaa ctcacctcag cacccctccc tgattttaag ttcacaatgc 4980 ttgttccgcc catccaaaat aatgcactgc caatttggtc cattccacaa gctccaccct 5040 acagtatggt caatcccagg agccccctca ccccagttgt ggaactgtac ataaattcca 5100 gttacgcaac gtgcaaccat cagctgggga ggtacactat ctatcaaggg gctataggta 5160 attccacctt caacccaagt ggtgcctgga ctgccacatg cacagcagaa gccggttccg 5220 tgactggcaa cccaaattgg aggtatgctc tccttgacct acctgacaac ccgacgtttg 5280 atcccacact tcctcccgta ccacgcgggt tttgtgattg gggttctggt gttaaatcag 5340 gaaacaaaca acatttggtg tgcttcacag gcaagaaatt tgcaggaggg tttcaagatg 5400 ttgatgcaca catgtgggat tatggggaca atgaaaccgt ggggttggac aacacctacc 5460 aaaggaccat ctacattagt gacccatccc tggaaaaaga cgcccagtac ctagtaatac 5520 ctatgggtgt ctcaggagca gcaaatgatg acaccgtgca agtcgcacct aactgctatg 5580 gttcctggga ttatgcccca acagtggccc cccctctcgg tgaacagttt gtctggttca 5640 gatcccagtt gcctgcttca aaaaccacga ctaccagtgg tgtcaactct gtcccagtga 5700 atgtcaatgc cctgatgtca cctgacctta tacgcagtgc ctatgcttct ggttttcccc 5760 ttggcaaagt tgcgctcctt gactatgttt tgtttggtgg tagtgttgtc cggcagttca 5820 aattgtaccc cgaggggtac atgactgcca acaccactgg atcaaatact gggtttatca 5880 ttcctgctga tggttatttc agattcaact cctgggtctc tccatccttt atgatctctt 5940 ctgtggttga tttgaacctg cagacagcag ttgtctttag ataatggctg gcgctgcgtt 6000 tgcttcaggt cttggtcaag ctgctggtgg catatttgga tccttgattt ccggcgccat 6060 tcaagctgga ctcaatgagc aacagttcaa tcacaataaa gctttggctg agcaacaatt 6120 tggttataat ctccagttgg cacagcaaaa tgccactctg acaaaggata tcaatcaatt 6180 caatcaacaa cttgagcttt caaaatacac caatgcaggc ttttctctcg ctgatgctgc 6240 tcttatgtct aagtccctct cttcaggcct ttcaccaact cgtgtgctta cttctgcagg 6300 tgtcaaggtg tatgccagtg gggcgcccac ttcataccta acatctggga agcaaatttc 6360 aagtgggata caaactatgc actctgccct ttctgctaag ccatcaaaaa ccccaaccgt 6420 ttacaagtgg gtgaataacc ctctaaatta tgatacccta tcaattggct ctgaagttag 6480 ttccacagtc ccaaccttgt ctagatcttc ctctgtgtct tctaaaaccc caaccttatc 6540 tagatcttct tccatatctt ctatctctag tggttctctg agtaggttct caacttgggg 6600 ttcctacatg gattacaaga tgccattaaa caagccgtga tcatgggtga tataaagacc 6660 actccaattg gccggagtga gaccctaagc ccatgtagct ttttcctggc atac 6714 //