ID EU384574; SV 1; circular; genomic DNA; STD; VRL; 2736 BP. XX AC EU384574; XX DT 03-FEB-2009 (Rel. 99, Created) DT 03-FEB-2009 (Rel. 99, Last updated, Version 1) XX DE Cotton leaf curl Rajasthan virus isolate Mustil-6A3 segment DNA-A, complete DE sequence. XX KW . XX OS Cotton leaf curl Rajasthan virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2736 RA Rehman M., Mansoor S., Fauquet C.; RT "Symptomless Reservoirs of Begomoviruses"; RL Unpublished. XX RN [2] RP 1-2736 RA Rehman M., Mansoor S., Fauquet C.; RT ; RL Submitted (31-DEC-2007) to the INSDC. RL ILTAB, Danforth Center, 975 North Warson Road, Saint Louis, MO 63132, USA XX DR MD5; 6c463a1e851924253e4d4194393ec476. DR EuropePMC; PMC5727119; 29234082. DR EuropePMC; PMC6571856; 31091727. XX FH Key Location/Qualifiers FH FT source 1..2736 FT /organism="Cotton leaf curl Rajasthan virus" FT /segment="DNA-A" FT /host="Gossypium mustelinum" FT /isolate="Mustil-6A3" FT /mol_type="genomic DNA" FT /country="Pakistan:Multan" FT /db_xref="taxon:223259" FT gene 116..481 FT /gene="AV2" FT CDS 116..481 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:B9TVF5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B9TVF5" FT /protein_id="ACC78757.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT EAQNVSDVQKSGCSKGL" FT gene 276..1046 FT /gene="AV1" FT CDS 276..1046 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:B9TVF6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B9TVF6" FT /protein_id="ACC78758.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPHDFGEVFNMFDNEP FT STATVKNSHRDRYQVLRKWHATVTGGQYAIEEQALVKKFVRVNHYVVYNQQEAGKYENH FT TENAFMRDMAWSHSSNPGYAVEKNTIYFYDSVTN" FT gene complement(1049..1453) FT /gene="AC3" FT CDS complement(1049..1453) FT /codon_start=1 FT /gene="AC3" FT /product="relication enhancer protein" FT /db_xref="GOA:B9TVF7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B9TVF7" FT /protein_id="ACC78761.1" FT /translation="MDSRPGVPITAAQAGNGAYMWEVPNPLYFKIISHVNGPFTMNMDI FT LTIRIQFNYNTGKALGLHKCFLTFRIWTTLQPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQNMYVDQYSEIKFKLH" FT gene complement(1146..1598) FT /gene="AC2" FT CDS complement(1146..1598) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /db_xref="GOA:B9TVF8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B9TVF8" FT /protein_id="ACC78760.1" FT /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTPRGTHHCSSSREWRIYVGGSKSPLFQDHQPRQRSIHDEYGHTHDQDPVQLQH FT WESSGTAQVFSNLPNLDDLTASDWSFLKGIQNPSPQISEQSRCNFN" FT gene complement(1495..2580) FT /gene="AC1" FT CDS complement(1495..2580) FT /codon_start=1 FT /gene="AC1" FT /product="replication protein" FT /db_xref="GOA:B9TVF9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B9TVF9" FT /protein_id="ACC78759.1" FT /translation="MPPKRNGFYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYISPFSSSSFDQVPEELEEWVSENVVDAAARPHRPQSIVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDVDPHFLKHFKEFMGAQRDWQS FT NTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWAVKNAIFITLDRPLYS FT GTNQSTAQGSEEAQQEEESRS" FT gene complement(2124..2426) FT /gene="AC4" FT CDS complement(2124..2426) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B9TVG0" FT /protein_id="ACC78762.1" FT /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA FT PTSNPTSRRTGTFSTGGNFRSTEGQQEEGNRQPMTLTPQHLTQAVSQRLLESLRN" XX SQ Sequence 2736 BP; 717 A; 552 C; 635 G; 832 T; 0 other; accggatggc cgcgcgattt ttttgtgggc ccccgattta tgagattgct ccctcaaagc 60 taaataacgc tcccgcacac tataagtact tgcgcactaa gtttcaaatt caaacatgtg 120 ggatccacta ttaaacgaat tccctgatac ggttcacggg tttcggtgta tgctttctgt 180 gaaatatttg caacttttgt cgcaggatta ttcaccggat acgcttgggt acgagttaat 240 acgggattta atttgtattt tacgctcccg taattatgtc gaagcgagct gccgatatcg 300 tcatttctac gcccgcgtcg aaagtacgcc ggcgtctgaa cttcggcagc ccatacacca 360 gccgtgctgc tgcccccatt gtccgcgtca caaaacaaca ggcatggaca aacaggccta 420 tgaacaggaa gcccagaatg tatcggatgt acagaagtcc ggatgttcca aagggttgtg 480 aaggcccatg taaggtacaa tcttttgagt cgagacatga tgtcgttcat attggtaagg 540 taatgtgtat ttctgatgtt actcgtggtg tcggtttgac ccatcgtatt ggtaaacgtt 600 tttgtgtcaa gtcagtttat gttttaggta agatatggat ggatgaaaat ataaagacca 660 agaatcacac gaattcggtg atgttctttt tagtccgcga tcgacgtcct gttgacaaac 720 ctcatgattt tggtgaggta tttaatatgt ttgacaatga acccagtaca gcgactgtga 780 agaatagtca tagggaccgt taccaggtgt tgaggaaatg gcatgcaacc gttacgggtg 840 gtcaatatgc tatcgaagaa caggctttgg tcaagaagtt tgtcagagtt aatcattatg 900 ttgtttacaa tcaacaggaa gcagggaaat acgagaatca taccgaaaat gcgtttatgc 960 gggatatggc ttggagtcac agtagcaacc ctggctatgc tgtggaaaaa aacacgatat 1020 atttttatga ctctgtaacg aattgatatt aatgaagttt gaattttatt tctgaatatt 1080 gatctacata catattttgt tggattacat tgtacaatac atgttctaca gctttaataa 1140 ctaaattaat tgaaattaca ccgagattgt tcagatattt gaggacttgg gttttgaata 1200 cccttaagaa aagaccagtc tgaggctgta aggtcgtcca gattcggaag gttagaaaac 1260 acttgtgcag tcccagagct ttcccagtgt tgtagttgaa ctggatcctg atcgtgagta 1320 tgtccatatt catcgtgaat ggaccgttga cgtggctgat gatcttgaaa taaaggggat 1380 ttggaacctc ccacatatat gcgccattcc ctgcttgagc tgcagtgatg ggtacccctg 1440 ggcgtgaatc catggttgtg gcagttgatt gatagataat aagaacaccc gcattcaaga 1500 tctactctcc tcctcctgtt gcgcctcttc gcttccctgt gctgtacttt gattggtacc 1560 tgagtacagg ggtctatcaa gtgtgatgaa gatcgcattc tttactgccc agttttttag 1620 tgcggtgttc ttttcctcgt ctaggaattc tttataactg ctgtttggac caggattgca 1680 gaggaagatt gttggtatcc cgcctttaat ttgaactggc ttcccgtact ttgtgttgga 1740 ttgccagtcc ctttgggccc ccatgaactc tttaaagtgt ttgaggaaat gcgggtcgac 1800 atcaatgaca ttataccagg cgtcgttact gtagaccttg ggactcaggt ccagatgtcc 1860 acacaaatag ttatgtggtc ccaatgacct agcccacatt gtcttccccg tacgactatc 1920 tccttcaatc actatacttt gaggtctgtg tggccgcgca gcggcatcga caacgttttc 1980 ggagacccac tcttcaagtt cttctggaac ttgatcgaaa gaagaagaag aaaaaggaga 2040 aatataggga gccggtggct cctgaaagat tctgtctaga tttgcattta aattatgaaa 2100 ttgtagtaca aaatctttag gagctagttc cttaatgact ctaagagcct ctgacttact 2160 gcctgcgtta agtgctgcgg cgtaagcgtc attggctgtc tgttgccctc ctcttgctga 2220 ccttccgtcg atctgaaatt gcccccagtc gagaatgtcc ccgtccttct cgatgtagga 2280 tttgacgtcg gagctggatt tagctccctg tatgttcgga tggaaatgtg ctgacctgct 2340 tggggagacc aagtcgaaga atcgcatatt ctggcacttg aatttccctt cgaactggat 2400 gagaacatgc aagtgaggag tcccatcttc gtgaagctct ctgcagattc taatatattt 2460 ttttgaagtt ggggtttgta tatttaataa ttgggaaagt gcttcctctt tggtgagaga 2520 acatttggga taagtgatga aatagttttt ggaataaaaa ccgttccgct ttggaggcat 2580 gttgactaaa attgatcacc gattgaccgc tcttgcaact ctccctggta tatcggtgat 2640 caatatatag tgatcaccaa atggcataat ggtaataaaa aaactttaat tttgaaattc 2700 aaaccaaaag gctaaagcgg ccatccgttt aatatt 2736 //