ID EU358605; SV 1; linear; genomic RNA; STD; VRL; 4436 BP. XX AC EU358605; XX DT 22-APR-2008 (Rel. 95, Created) DT 22-APR-2008 (Rel. 95, Last updated, Version 1) XX DE Maize chlorotic mottle virus isolate Nebraska, complete genome. XX KW . XX OS Maize chlorotic mottle virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Machlomovirus. XX RN [1] RP 1-4436 RX DOI; 10.1007/s00705-008-0069-y. RX PUBMED; 18365127. RA Stenger D.C., French R.; RT "Complete nucleotide sequence of a maize chlorotic mottle virus isolate RT from Nebraska"; RL Arch. Virol. 153(5):995-997(2008). XX RN [2] RP 1-4436 RA Stenger D.C., French R.; RT ; RL Submitted (19-DEC-2007) to the INSDC. RL CDPGRU, USDA-ARS, 9611 S. Riverbend Ave., Parlier, CA 93648, USA XX DR MD5; 3f2f1ed63e875cdd898de1033a785635. DR EuropePMC; PMC3709059; 23825140. DR EuropePMC; PMC5216416; 28059116. DR EuropePMC; PMC5368279; 28400775. DR EuropePMC; PMC5775324; 29352173. XX FH Key Location/Qualifiers FH FT source 1..4436 FT /organism="Maize chlorotic mottle virus" FT /isolate="Nebraska" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:12138" FT gene 118..987 FT /gene="P32" FT CDS 118..987 FT /codon_start=1 FT /gene="P32" FT /product="P32" FT /note="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:B2L0Q0" FT /protein_id="ACA57839.1" FT /translation="MPSPCTYGDPTFNSRILEAVVADVLGGTEDDGGPSLEEWFDAQTL FT SDYTNCATDPPMATVHTRENDIKSWTELSENFPDLVRYPESLVETLLDTEHECGHFYDA FT PDSFQISVTAMFTDRCKCQSCDPNFQARSLSRALLGPLPESGDDAEWMEQAYTPDAELF FT VNEPTDDPIPTTDCKRPIQPTWSVDVHSKQVDSDWGLSDSTNVTVCSASSSLLPAGRGG FT IYFMCPRPEGIERVCLQVGAKIRSGAPNSGTITNLPGGTGYGTEWSDDGYETQWSDGPY FT SIPSGLSD" FT gene 137..3034 FT /gene="P111" FT CDS 137..3034 FT /codon_start=1 FT /transl_except=(pos:1451..1453,aa:OTHER) FT /gene="P111" FT /product="P111" FT /note="RNA dependent RNA polymerase; read through product FT of amber stop codon" FT /db_xref="GOA:B2L0Q1" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B2L0Q1" FT /protein_id="ACA57840.1" FT /translation="MATLPSIHAFWKLWWPTFSEERKMTVVQALRNGLTRKLFQITQIA FT QQILRWPPYIRERMTSSLGQSLVKTFQTLLGIRKALSRLCLTRNMNVDIFTMLLIPFKF FT LSQLCSQIVASANHVIQTFRHGLSRGLCLARCRNPETMRSGWSKHTLQMQNCSSTSPLM FT TPFQPQIVRDLSNPHGLWMSTRNKLTRTGGSAIQQTSRYVRLAVRFSLLAAGAYISCVL FT ARKALKEYVYRWELKSDQELPTREQSQISQVEQAMEQNGAMMVMKLNGPTAPILSLQDC FT LTKHVLVPEIVDEEGTVTQKEQSTFLIREFGPAVRNLVTLAKLEFGGIPKKTTANELTV FT WRFLVRKCEHANMNPTDSRTAISMALPYVFMPCRTDVGRASIPLRDESIEICRQYRAQF FT VEETPLRRVFNNPLSGKAWRNWVRHLGGLDDPALFQELKXGCLEEWLGVQSRRTRARHP FT KLRSHFKDTRHKTRRVFRIAGLGNLYEFGVHNNSAVNLERGLMERVFYVKDDKGELVSC FT PEPISGIFWKNLKGFRNSIVHHVGHRHPVSRETFLAYYTGPKRTMYEKAVNSLYEMPVS FT YDDAKLKTFVKAEKINLTKKADPVPRVIQPRAPRYNVELGRYLRPVEHPIYHAIDKIWG FT GPTIMKGYSVEQIGRHIENAFRSFTDPVAIGFDASRFDQHVSVEALRWEHSVYSRIYGY FT PELLTQLLRWQIHNRGTAYASDGAFNYQVDGKRMSGDMNTSLGNCILATAITHDFVTKL FT GIPARLINNGDDNVLICPAVEVGRVRQELYRHWLNYGFEVISEEPVYILEQVEFCQMRP FT VFDGTQYTMMRDPRTTMSKDAYAVTPFNTPTAARRWMRAVGECGLSLTGGLPVKQEYYT FT ALVKHGLDPKNIKQGKDFDSGLYYLSKLSNRKWQEVQESARYSFWLAFGYTPDEQRALE FT EYFKSWTPTFEWSTTGILAEIPECLLLKYNPLPPT" FT gene 137..1453 FT /gene="P50" FT CDS 137..1453 FT /codon_start=1 FT /gene="P50" FT /product="P50" FT /db_xref="UniProtKB/TrEMBL:B2L0Q2" FT /protein_id="ACA57841.1" FT /translation="MATLPSIHAFWKLWWPTFSEERKMTVVQALRNGLTRKLFQITQIA FT QQILRWPPYIRERMTSSLGQSLVKTFQTLLGIRKALSRLCLTRNMNVDIFTMLLIPFKF FT LSQLCSQIVASANHVIQTFRHGLSRGLCLARCRNPETMRSGWSKHTLQMQNCSSTSPLM FT TPFQPQIVRDLSNPHGLWMSTRNKLTRTGGSAIQQTSRYVRLAVRFSLLAAGAYISCVL FT ARKALKEYVYRWELKSDQELPTREQSQISQVEQAMEQNGAMMVMKLNGPTAPILSLQDC FT LTKHVLVPEIVDEEGTVTQKEQSTFLIREFGPAVRNLVTLAKLEFGGIPKKTTANELTV FT WRFLVRKCEHANMNPTDSRTAISMALPYVFMPCRTDVGRASIPLRDESIEICRQYRAQF FT VEETPLRRVFNNPLSGKAWRNWVRHLGGLDDPALFQELK" FT gene 2995..3834 FT /gene="P31" FT CDS 2995..3834 FT /codon_start=1 FT /transl_except=(pos:3199..3201,aa:OTHER) FT /gene="P31" FT /product="P31" FT /note="read through of ocher stop codon" FT /db_xref="UniProtKB/TrEMBL:B2L0Q3" FT /protein_id="ACA57842.1" FT /translation="MSSSQIQSPPTDVARRQQTGTAVRSEDNHRNQLENIAVGKLTKSE FT GAPAQQNVIIAKEVVINNHFNFNXAGVCVCRFVLASVVKEFNLGDFDLLDSVHLDEDTG FT HRCRLSRAIGVLDRSDTKIPKDRHTQWQQVAGLPEVESSADVAWKQNPELFEPTRLSLD FT PTRSETVPPLREQPAPCPKFCLQCQQQLLTRFSRFQCVQGLTSRLERRPDTLGRPNGWQ FT HNHRCGIQLCSTLCVSLGRHSQQTPLADTFPWHSSPITCYQYPLGWRMLPGSCPQLQ" FT gene 2995..3201 FT /gene="P7" FT CDS 2995..3201 FT /codon_start=1 FT /gene="P7" FT /product="P7" FT /db_xref="UniProtKB/TrEMBL:B2L0Q4" FT /protein_id="ACA57843.1" FT /translation="MSSSQIQSPPTDVARRQQTGTAVRSEDNHRNQLENIAVGKLTKSE FT GAPAQQNVIIAKEVVINNHFNFN" FT gene 3384..4094 FT /gene="CP" FT CDS 3384..4094 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="structural protein of virion" FT /db_xref="GOA:B2L0Q5" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B2L0Q5" FT /protein_id="ACA57844.1" FT /translation="MAASSRSTRGRKQRGRSVEAKSRAIRANPPVPRPNPQRNRPPPAG FT TTCSMSEILLAVSATTADQILEIPVCAGIDFPAGTSPRYIGAAKWLAAQSQMWNTIVFN FT SVRITWETFTADTTSGYISMAFLSDYMLSIPTGVEDVARIVPSATIALKNRGPSIVMPQ FT NRTVFRCIQAGQFAALGSAADKQMYSPGRFIVAIPKASATQAVGQIKISYSVSYRGAAI FT LQPALVPGPGLANH" XX SQ Sequence 4436 BP; 1198 A; 1114 C; 1110 G; 1014 T; 0 other; aggtaatctg cggcaacaga ccccaacgcg ttagacacga ccttacagtt gactcacgtc 60 ttgcatcctg tgagagctct aacgtgggaa tttgcccctg actggcaatc aggtttcatg 120 ccctctccct gcacttatgg cgaccctacc ttcaattcac gcattttgga agctgtggtg 180 gccgacgttc tcggaggaac ggaagatgac ggtggtccaa gccttgagga atggtttgac 240 gcgcaaactc tttcagatta cacaaattgc gcaacagatc ctccgatggc caccgtacat 300 acgcgagaga atgacatcaa gtcttggaca gagcttagtg aaaactttcc agaccttgtt 360 aggtatccgg aaagccttgt cgagactctg cttgacacgg aacatgaatg tggacatttt 420 tacgatgctc ctgattcctt tcaaatttct gtcacagcta tgttcacaga tcgttgcaag 480 tgccaatcat gtgatccaaa ctttcaggca cggtctctct cgcgggctct gcttggcccg 540 ttgccggaat ccggagacga tgcggagtgg atggagcaag catacactcc agatgcagaa 600 ttgttcgtca acgagcccac tgatgacccc attccaacca cagattgtaa gagacctatc 660 caacccacat ggtctgtgga tgtccactcg aaacaagttg actcggactg ggggctcagc 720 gattcaacaa acgtcacggt atgttcggct agcagttcgc ttctccctgc tggccgcggg 780 ggcatatatt tcatgtgtcc tcgcccggaa ggcattgaaa gagtatgtct acaggtggga 840 gctaaaatcc gatcaggagc tcccaactcg ggaacaatca caaatctccc aggtggaaca 900 ggctatggaa cagaatggag cgatgatggt tatgaaactc aatggtccga cggcccctat 960 tctatccctt caggactgtc tgactaaaca cgttctggtt ccagagattg tggacgaaga 1020 aggcacagta acacaaaaag aacagtccac ttttctcatc cgtgagtttg gtcctgccgt 1080 cagaaaccta gtgaccctcg caaagctaga attcggcgga attccaaaga aaaccacagc 1140 caatgaactt acggtttggc ggttcttggt acggaagtgt gaacatgcaa atatgaaccc 1200 aactgactcc cgtactgcca tttcaatggc cctgccatac gtgtttatgc cgtgtcgcac 1260 tgatgttgga agagcttcaa ttccactgcg tgatgaatcc attgaaatct gtcgccaata 1320 tcgcgcacaa tttgtggagg agacacccct acggcgagta ttcaacaacc cattgagcgg 1380 aaaagcatgg cgtaactggg ttaggcacct gggtgggctg gatgatccag ccctattcca 1440 ggagttgaaa taggggtgtc ttgaagagtg gcttggggtg cagtctcggc gcacacgtgc 1500 gcggcacccc aaactccgta gccactttaa agacacgaga cacaaaaccc gcagagtgtt 1560 ccggattgca ggtttgggca acctgtatga atttggagtc cacaacaact ctgcggtaaa 1620 cctggaacgt ggactaatgg agcgagtatt ttatgtgaaa gatgataagg gggaactcgt 1680 ttcatgccct gagcctatta gtgggatatt ttggaaaaac ttgaagggat tcagaaatag 1740 cattgttcac catgtgggac acagacatcc agtgtcacga gagacgtttc tcgcttacta 1800 tacagggcca aagcgcacca tgtatgagaa agcggtgaat tccctctacg aaatgcctgt 1860 ctcatacgac gatgctaaac tgaaaacatt tgtaaaagca gaaaagatca atctcactaa 1920 gaaagctgat cctgtaccac gtgtgatcca gccccgtgct ccccggtata atgtggaact 1980 gggtaggtat ctgagaccgg ttgagcaccc aatctaccat gctatagaca agatttgggg 2040 tggtccgact attatgaaag gttactcggt tgaacagatt ggaagacata ttgagaacgc 2100 gttccgatcg ttcaccgatc cagtggccat tggatttgat gcaagtcggt ttgatcaaca 2160 cgtgagtgtt gaagctctac gctgggaaca tagcgtatac tcacggattt atggctatcc 2220 agagcttctc acacaattgc tgcggtggca gattcataat cgcggaacag catacgcctc 2280 agacggcgcg ttcaactacc aggtggatgg taaacgcatg agtggggaca tgaacacatc 2340 attgggcaat tgcatcctgg ccacagcaat cacacatgac ttcgtgacca agctgggaat 2400 tccagccaga ttaatcaaca atggagatga caacgtcctg atctgtccgg cagtggaggt 2460 aggcagagtc agacaggaac tgtacagaca ttggttgaac tacggatttg aagtcatatc 2520 agaagaacct gtgtacatcc ttgaacaggt tgaattttgc cagatgcgac cagtcttcga 2580 cggtacacaa tacaccatga tgagagaccc ccgcaccacc atgtccaaag atgcctatgc 2640 tgtaacccct tttaacacac caaccgcagc aaggaggtgg atgagagcag ttggggaatg 2700 cggactcagc cttacaggag gcctccccgt aaagcaggaa tactatactg ctctcgtaaa 2760 acacggacta gatccgaaaa acatcaaaca gggaaaagac tttgacagtg ggctatacta 2820 tcttagcaag ttatccaatc gcaaatggca ggaggtccaa gagagcgctc gctactcatt 2880 ctggcttgct ttcgggtaca caccagatga acaacgagcg ttagaggagt attttaaatc 2940 ttggactcct acgtttgaat ggtccacaac gggtattttg gcagaaattc ccgaatgtct 3000 tcttctcaaa tacaatcccc tcccaccgac gtagcccgca gacaacagac cggtactgcc 3060 gtgcgatctg aagacaacca tcgcaatcag ttggaaaaca ttgctgttgg aaaactcact 3120 aaatctgaag gagcacctgc ccaacagaac gtgatcattg cgaaagaggt ggttatcaat 3180 aaccacttca atttcaactg agctggagtg tgtgtgtgta gattcgtcct ggcctcagtg 3240 gttaaggaat ttaatcttgg ggattttgat ctcctcgatt ctgttcatct tgacgaagac 3300 acaggacacc gttgccgttt atcacgagcc atcggtgtac tcgatcgatc agacacaaaa 3360 attccaaaag atcgacatac acaatggcag caagtagccg gtctacccga ggtagaaagc 3420 agcgcggacg tagcgtggaa gcaaaatcca gagctattcg agccaacccg cctgtccctc 3480 gacccaaccc gcagcgaaac cgtccccccc ctgcgggaac aacctgctcc atgtccgaaa 3540 ttctgcttgc agtgtcagca acaactgctg accagattct cgagattcca gtgtgtgcag 3600 ggattgactt cccggctgga acgtcgcccc gatacattgg ggcggccaaa tggctggcag 3660 cacaatcaca gatgtggaat acaattgtgt tcaactctgt gcgtatcact tgggagacat 3720 tcacagcaga caccactagc ggatacattt ccatggcatt cctctccgat tacatgttat 3780 caatacccac tggggtggag gatgttgcca ggatcgtgcc ctcagctaca atagctctga 3840 agaacagagg gccatccatt gtcatgccac agaaccgcac tgtgttcagg tgtatacagg 3900 ctggtcagtt tgctgcattg ggcagcgctg ctgacaagca aatgtattcc ccaggacgat 3960 tcattgtggc tatccctaaa gctagtgcaa cacaagcggt aggccaaatc aaaatctcgt 4020 actccgtgtc ctaccgtgga gcagcgatcc tacaacccgc cctggttcca ggcccagggc 4080 tggcaaatca ttgaacacaa ggtgagccgg catgaggttg caagaccgga ataaccagtc 4140 cttctggcag agtcctgcca atccaaagtg tttgggagcc taaatcgtat actagtagtt 4200 tgcgtgatga ccatgactgg agagtgggcg gcggctgcca accgcagact gggcgtatat 4260 agtaagcctt gacccaccca tggacaacac gtacttacga acggtgcgac atggtaactg 4320 gatacactta accctggggc aagtagatgc taggaaacta gcatcgggcc gcccacgagg 4380 gtttctgaac tcaacggagt agaacggggg ggggtaatgc ccctctcttc cggccc 4436 //