ID EU339939; SV 1; circular; genomic DNA; STD; VRL; 2605 BP. XX AC EU339939; XX DT 20-JAN-2008 (Rel. 94, Created) DT 20-JAN-2008 (Rel. 94, Last updated, Version 1) XX DE Rhynchosia golden mosaic virus segment DNA-A, complete sequence. XX KW . XX OS Rhynchosia golden mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2605 RA Mauricio-Castillo J.A., Mendez-Lozano J., Perea-Araujo L., RA Arguello-Astorga G.R.; RT "New strains of Rhynchosia golden mosaic virus (RhGMV) isolated from RT soybean and weeds in Sinaloa, Mexico"; RL Unpublished. XX RN [2] RP 1-2605 RA Mauricio-Castillo J.A., Mendez-Lozano J., Perea-Araujo L., RA Arguello-Astorga G.R.; RT ; RL Submitted (13-DEC-2007) to the INSDC. RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y RL Tecnologica, A.C., Camino a la Presa Sn Jose 2055, San Luis Potosi, S.L.P. RL 78216, Mexico XX DR MD5; 4d571db145bd7a5262ec9adcc78165af. XX FH Key Location/Qualifiers FH FT source 1..2605 FT /organism="Rhynchosia golden mosaic virus" FT /segment="DNA-A" FT /host="Asteraceae" FT /mol_type="genomic DNA" FT /country="Mexico" FT /db_xref="taxon:117198" FT gene 188..943 FT /gene="AR1" FT CDS 188..943 FT /codon_start=1 FT /gene="AR1" FT /product="capsid protein" FT /note="CP; encapsidation of viral genome" FT /db_xref="GOA:B0FN64" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B0FN64" FT /protein_id="ABY65917.1" FT /translation="MPKRDAPWRLMAGTSKVSRAANYSPGAGTGPKSNRASAWVNRPMY FT RKPRIYRMYRSPDVPKGCEGPCKVQSFESRHDVTHVGKVLCISDITRGSGITHRVGKRF FT CVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAAKYENHTENAL FT LLYMACTHASNPVYATLKIRVYFYDSIMN" FT gene complement(940..1338) FT /gene="AL3" FT CDS complement(940..1338) FT /codon_start=1 FT /gene="AL3" FT /product="replication enhancer protein" FT /note="REn" FT /db_xref="GOA:B0FN65" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B0FN65" FT /protein_id="ABY65920.1" FT /translation="MDSRTGEPITAPQATNGVFIWEVPNPLYFKIIRVEVPLHTHSKLF FT HIQIRANHNLRRALDLHKAFFNFQVWTTLTTASGQIYLSRFKLLVTSYLDNLGVISINN FT VIRAVAFATDKHYVSDVLENHEIKYKLY" FT gene complement(1085..1501) FT /gene="AL2" FT CDS complement(1085..1501) FT /codon_start=1 FT /gene="AL2" FT /product="TrAP" FT /note="transcriptional regulator of late genes; silencing FT supressor" FT /db_xref="GOA:B0FN66" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B0FN66" FT /protein_id="ABY65919.1" FT /translation="MTGHNKTPSSSPLRNRSSPLSIKAQHRYAKRQTRRKRIDLHCGCS FT IYVHINCANHGFTHRGTHHCASSNEWRFYLGGSKSPIFQDNQSGGPITHTQQALPHSNQ FT SQPQPTESVGSPQSLLQFPSLDDIDDSFWADLFK" FT gene complement(1395..2471) FT /gene="AL1" FT CDS complement(1395..2471) FT /codon_start=1 FT /gene="AL1" FT /product="replication initiation protein" FT /note="RCR-initiator protein; Rep" FT /db_xref="GOA:B0FN67" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B0FN67" FT /protein_id="ABY65918.1" FT /translation="MPLPKRFRLNAKNYFLTYPQCPIAKEEALEQIQRLTTPVNKKFIK FT ICRETHEDGQPHLHVLIQFEGKFQCTNNRFFDLVSSTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTIEWGEFRIDGRSARGGQQSANDTYAKALNATSAEAALQIIKEEQPQHFFLQFH FT NLITNANRIFQKPPEPWVPPFQQSSFNNVPPIITQWVNQNVCDSAARPLRPISIVIEGP FT SRTGKTQWARSLGPHNYLCGHLDLNQKIYSNNAWYNVIDDVNPHYLKHFKEFMGAQRDW FT QSNCKYGKPIQIKGGIPAIFLCNPGPHSSYKEYLREEKNKSLNDWAQQNAIFITIEEPF FT FTTIDQGSTQIRQETNEA" FT gene complement(2057..2320) FT /gene="AL4" FT CDS complement(2057..2320) FT /codon_start=1 FT /gene="AL4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B0FN68" FT /protein_id="ABY65921.1" FT /translation="MKMGNLIYTCSYSSKENSSARITDSSTWYPQPGQHISIRTYRELN FT PAPTSSPTSTRMETQLNGENSESTADLLEEVSNLLMTHTQRH" XX SQ Sequence 2605 BP; 627 A; 495 C; 653 G; 830 T; 0 other; accgttggcc gaccggtgcc acgcgccccc cctccgtaca actttatttt gaattaaaga 60 taattctttt gtgttgtcca atgatattgc gtctggcgag tctagttatc cgttccaact 120 tagtgcgcaa gttgttgatt gtccgctatt taaattgaaa ttgtggagcc agtgtcttta 180 attcaaaatg cctaagcggg atgctccgtg gcgtttgatg gcggggacct caaaggtgtc 240 ccgtgctgcc aattattccc ctggagcggg aacgggccct aaatccaata gggcctccgc 300 ttgggtgaat aggcccatgt acaggaagcc caggatttat cggatgtaca gatcccccga 360 tgttccgaaa gggtgtgaag ggccttgtaa ggtccaatct tttgaatcac gacatgatgt 420 tacccatgtt ggtaaggtcc tttgtatatc cgatattaca cgtggtagtg gtattaccca 480 tcgtgttggt aagcgtttct gcgtgaagtc cgtgtatatt ctaggcaaag tatggatgga 540 cgagaacatc aagttgaaga accacaccaa cagtgtgatg ttttggttgg tgagggatag 600 gagaccatat ggtaccccta tggattttgg ccaggttttc aacatgtttg acaatgaacc 660 tagtaccgct actgttaaga acgatttgcg tgaccgtttt caagttatgc ataagttcta 720 tgccaaggtg actggtggac agtatgcgag caacgagcaa gcgctggtga agcgtttttg 780 gaaggttaac aattatgtgg tgtacaatca tcaagaagcg gcaaagtacg aaaatcacac 840 ggagaacgct ttgttattgt atatggcgtg tacgcatgcc tctaatcctg tgtatgcgac 900 attgaaaatt cgggtctatt tttatgactc gataatgaat taataaagtt tgtattttat 960 ttcatgattt tcaagtacat cgcttacata atgtttatcc gtcgcgaatg caacagctct 1020 aattacattg ttaattgaaa taacgcctaa attgtctaaa taagacgtta caagtaattt 1080 gaatctactt aaataaatct gcccagaagc tgtcgtcaat gtcgtccaga cttggaaatt 1140 gaagaaggct ttgtggagat ccaacgctct ccgtaggttg tggttggctc tgatttgaat 1200 gtggaagagc ttgctgtgtg tgtgtaatgg gacctccact ctgattatct tgaaatatag 1260 gggatttgga acctcccaaa taaaaacgcc attcgttgct tgaggcgcag tgatgggttc 1320 ccctgtgcgt gaatccatga ttggcgcagt ttatgtggac gtatattgaa cagccgcagt 1380 ggagatcaat tcttttacgc ctcgtttgtc tcttggcgta tctgtgttga gccttgatcg 1440 atagtggtga agaacggttc ctcaatggtg atgaagatgg cgttttgttg tgcccagtca 1500 ttgaggcttt tgttcttctc ttcgcggaga tactccttat atgatgaatg ggggccagga 1560 ttgcagagga agatagcggg aattcctcct ttaatttgaa ttggctttcc gtatttgcag 1620 tttgattgcc aatccctttg ggcccccata aactccttaa agtgtttcag ataatgtgga 1680 ttgacgtcat cgattacgtt ataccatgca ttattggagt agattttttg attgagatct 1740 agatgaccac ataggtaatt gtgagggccg agacttcggg cccattgtgt tttgcccgtc 1800 cttgatggtc cctcaataac gattgatata ggtctcaatg gccgcgcagc ggaatcacaa 1860 acgttttgat taacccattg cgtaattatt ggaggaacat tattgaacga tgactgttga 1920 aatggaggga cccatggttc cggtggtttc tggaaaatcc tgtttgcgtt tgtgattagg 1980 ttatgaaatt gaagaaagaa atgttggggt tgttcttcct ttatgatctg cagagccgct 2040 tctgcagatg ttgcgtttaa tgcctttgcg tatgtgtcat tagcagattg ctgacctcct 2100 ctagcagatc tgccgtcgat tcggaattct ccccattcaa ttgtgtctcc atccttgtcg 2160 atgtaggact tgacgtcgga gctggattta gctccctgta tgttcggatg gaaatgtgct 2220 gacctggttg aggataccag gtcgaagaat ctgttattcg tgcactggaa ttttccttcg 2280 aactgtatga gcacgtgtag atgaggttgc ccatcttcat gtgtttctct gcatatcttg 2340 atgaacttct tgttaactgg agtcgtaagg cgctgtattt gctcgagggc ttcttcttta 2400 gctattggac attgaggata tgtgaggaag tagttcttgg catttaagcg aaaccgtttt 2460 gggagtggca ttcttgtaat aagaagggtg tacaccgatt ggggctctct caaactggct 2520 gattgtatcg gtgtattggt atccaatata tagcttcttt cttggtatca cttttgacac 2580 gtgggaggcc aacgtatata atatt 2605 //