ID EU332336; SV 1; linear; genomic RNA; STD; VRL; 5664 BP. XX AC EU332336; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 06ZZ5 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5664 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5664 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5664 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; 750adc46f75509e3a3ca97432667982e. DR EuropePMC; PMC3033904; 21326861. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5664 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="06ZZ5" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Zhengzhou" FT /db_xref="taxon:2169986" FT CDS join(142..1161,1161..2747) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FL24" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FL24" FT /protein_id="ABY73715.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNVKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT LEGLCTASGFESPFTILGLPEIAVTDGARLRKVSSNINYLTQTHLGLVYKAPNASLHNA FT LVAIERRVFTVGKGDSAIYPPHPEYDIFSETMGYFAESIVTKVGYCKTYTPQQLALSYS FT AGKRAQYFKAIESLKKEPYQVKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT FT RLKFNEKKIMHAIDGVFGSPTVLSGYDSFTQGRIIASKWQKFASPVAIGVDASRFDQHV FT SEQALKWEHGIYNGIFGDNELALALEHQLVNNIKMFVEDKMLTFKVKSHRMSGDINTSM FT GNKLIMCGMMHAYLKKLGVEAELCNNGDDCVIITERANEHLFSGMYDHFLKYGFNMVTE FT TPVYELGELEFCQSKPVRISGNYRMVRRPDCIGKDSNTLLSMRNESDVKSYMSAVAQCG FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFEETPITTDNR FT MSYWESFGVDPKIQQLVERYYDDLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY" FT CDS 142..1164 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FL25" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FL25" FT /protein_id="ABY73716.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNVKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT " FT CDS 2861..4801 FT /codon_start=1 FT /transl_except=(pos:3458..3460,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FL26" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FL26" FT /protein_id="ABY73720.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAKXVDSSTPEPKPTPAPTPAPTPEP FT KPEPTPAPPPKRFFEYVGTPIGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEASGKDACFY FT LMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMTRHSECPTRVNNIL FT IDEGYCQPLSTITDQGLCDVQTPGQDQEVVEEDRQTVSTESDIALKEYEAATAEIPDAE FT EDALPSREQLSSKPVDTSGEEIPKPRPPSNEVLGVYQGQPIYAEDVPPGTRQKLRDAAK FT APSTLLYDKTPKRSKSILSRFIEGNRSSVESAAPSTATTSNLTREQLREYTRIRNTLGL FT TAAKEYKARLL" FT CDS 2861..3460 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FKK9" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B0FKK9" FT /protein_id="ABY73717.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAK" FT CDS 2901..3362 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKL0" FT /protein_id="ABY73718.1" FT /translation="MAHEGGAVEQFGQWLWSSPIEQDPDDEMLDAQEEEGQVLYLDQNA FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLEHTRPPL FT RRALCLLNSTPRASNQPYLATLTHSPSANPPQSPSAQRRLEGPSSRRHR" FT CDS 4930..5052 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FL29" FT /protein_id="ABY73719.1" FT /translation="MDDLRIIALCALSSTILFTVALVSSWCASCCKLIDAACSV" XX SQ Sequence 5664 BP; 1598 A; 1385 C; 1358 G; 1323 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgcg acagagtcct acagttgcct gacacgcctg tagccccctt 120 cttccccttt cattcgccac catggtgttc tttgagatgc ttatcggtgc cagcgtaaag 180 gctgtcaagg acttcatcag ccactgctat tctagactaa agagtatata ctactctttt 240 aagagatggc tgcttgagat atccgggcag tttaaggccc atgacgcctt tgtcaacatg 300 tgcttcgggc acattgctga catcgaagac tttgaggcgg agctcgctga ggagtacgcc 360 gagaaggagg aggagatcga ggaagcacga agcttgctcc gcttgctaac tgcccagaag 420 tctaaatctg gggtggatga ggcttggacc gacttctttt tgaagtcgag aggcggcgtt 480 tatgcgccac ttaactgcga gccgaaatcc atagagcttg atgccaaagc ggacaagttg 540 gaaaagctcc ttgaggacat gcaccttttc gaggtgcgcg cggccaagac ctacatcaag 600 gaaaagggcc gtggattcat caattgctgg aacgaccttc gatcaaggtt gcagttggtg 660 aagtcagtca aagacgaggc caaggacaat gtcaaagcgg cctccaagat tggtgtggag 720 ttttctgccc ccaccaatat tgctgatctc tacacattca ctgaggttac aaaagtagag 780 acaggtctta ccaaggagac gactagggtt gtcaacggag aggaggagac ttccaccgta 840 cccctggttg aagacgtccg gaaaatcaag gacgatgaag tcagtaggga gagtgcctcc 900 aattggatca gggaggtaat caaattgaaa aactccacac tttccgctga cgagctttcc 960 ctggcaacca tcgccaggta tgtagaaaat ttaggggaaa aatacaaact cgacattgcc 1020 tcaaaaacat atcttaagca atgtgcgatg atttctgtgc caatcccctc ccaaaaagac 1080 ataaaaacaa agatggtgat ccaaagccct gctgcccgtg cgcttcgtga gcgcgtggca 1140 gttcttgatt cccagggttt ttagaggggc tctgtaccgc ctccggtttt gaaagcccat 1200 ttaccattct tggcttaccg gagatagcgg tcacagacgg agcccgactc cgtaaggtta 1260 gtagtaatat taattacctt acccagaccc atctaggcct tgtatataaa gcacccaatg 1320 catccctgca caacgcgctc gtagccatcg aaaggagagt gtttacagta ggaaaggggg 1380 attctgctat ctaccccccc cacccggaat atgatatttt ctcagagaca atgggctact 1440 ttgctgagtc cattgtcacc aaggtgggat actgcaagac atacacccct cagcaactgg 1500 ctcttagtta cagtgcaggg aagagggccc agtatttcaa agccattgag tccttgaaga 1560 aggaacccta tcaagttaag gactcaaacg tgcaggcatt cctcaagaag gagaaacact 1620 ggatgaccaa agccatcgcc ccgcgtctga tttgcccccg ctctaagcgg tacaacataa 1680 tcctaggaac tcgtttgaaa ttcaacgaga agaagatcat gcatgccatt gacggtgtgt 1740 ttggatcccc cactgtgctt tcaggctatg atagcttcac tcaaggcaga atcatagcca 1800 gtaagtggca aaagtttgca tcacccgttg ctataggtgt tgatgctagc cgctttgacc 1860 aacacgtgtc tgagcaggcg cttaagtggg aacacgggat atacaatggc atttttggcg 1920 acaatgaatt ggcccttgct ctcgaacatc agcttgtaaa taatattaag atgttcgtcg 1980 aggacaagat gttaaccttc aaagttaaga gccatagaat gtcaggggac attaacacca 2040 gcatgggcaa caagcttatc atgtgtggca tgatgcatgc ttacttaaag aagctgggtg 2100 ttgaagcaga actttgtaac aatggagatg attgtgtcat cataactgaa agggctaatg 2160 aacacctttt cagtggaatg tatgaccatt tccttaaata cggcttcaac atggtgacgg 2220 aaaccccggt ttacgaactc ggggaacttg aattttgcca atccaaaccc gtcagaatta 2280 gtggcaatta tagaatggtc cgtaggcccg attgcatagg aaaagatagc aacacactct 2340 tgagcatgcg caatgaatcc gacgtcaaaa gctatatgtc ggctgtggct cagtgtggtc 2400 tcgttttgaa tgcgggtgta cccatactcg aaagcttcta ccgctgccta tacagaagct 2460 cggggtacaa gaaagtaagt gaggaataca tcaaaaatgt catatcatat ggaacagatg 2520 aacgccttca gggtagacgt acctttgagg agacacctat caccactgac aatcgaatgt 2580 catattggga atcatttgga gttgacccta agattcaaca acttgtcgag aggtactacg 2640 acgatcttac ggtaagtgcc caactccaaa gtgtgaaggt gacatctcca catctgcaat 2700 caatcctcct ctccattccg gagaacaact cgcacaacga atattaatta ccaaatctta 2760 gccgggtttg ggatagggtt tatcactagt attccctgta cattagctct cacgtacttt 2820 atttataata aagtttcaga caccactaga gaggtggtga atgaattcag taggccgtag 2880 aggacctaga agagcaaata atggcacacg aaggcggcgc cgtcgagcaa ttcggccagt 2940 ggttgtggtc cagcccaatc gaacaggacc cagacgacga aatgctagac gcgcaagagg 3000 aagaaggcca ggttctgtat ttggaccaaa acgcggggct gaggtattcg tattctcagt 3060 cgacaacctt aaggccaact cctccgggat cctcaaattc ggtcccgatt tatcgcaatg 3120 cccagcggtt tcagacggag tacttaagtc ctaccacaat tacaagatct caagtatcaa 3180 cgttgagttt agaacacacg cgtccgccac tacgtcgggc gctatgttta ttgaactcga 3240 cacctcgtgc aagcaatcag ccctatctag ctacattaac tcattcacca tcagcaaatc 3300 cgcctcaaag tccttccgcg cagcggagat tggagggacc cagttccagg cgacatcggt 3360 gaatcaattc tttcttttat acaaggcaaa tggcactaca actgatattg cagggcagtt 3420 catcatcaga attgagcttc atttgatgac tgccaaatag gtagactcct caacaccgga 3480 accgaagccc acaccagccc caacacctgc cccaacacct gagccaaaac cagagccaac 3540 acctgcacct ccccccaagc gtttctttga gtatgttggg actccgatag gggtcatatc 3600 tactcgagag aacaccgaca gcatatcggt gtccaagctc ggtggccagt cgatgcagta 3660 tatagaaaac gagaagtgtg aaactaaaac catcgactcc ttctggagca caaacaacaa 3720 cgtttcggca caagctgcct tcgtttttcc agtgccagaa gggtcgtaca gtgtgaacat 3780 ctcgtgtgaa ggtttacaat ccgttgacca cattggtggc aacgaggatg gctattggat 3840 tgggctcatt gcctactcca actcatcagg cgacaactgg ggtgtaggta actataaagg 3900 gtgtgtgttc acaaactttc tggcaacaaa cacctggaga ccaggacaca aggatttgaa 3960 acttaacgat tgccagttca cagatggaca aatagttgaa agggatgcag ttatgtcttt 4020 ccacgtagag gcctctggca aagatgcctg cttctacctg atggctccca aaacaatgaa 4080 aacagacaag tacaactatg ttgtctcgta tggagggtac acgaacaaaa gaatggagtt 4140 cggtaccatt tctgtaacat gtgatgaatc cgatgttgag gcactccgca tgacccggca 4200 ctctgagtgc cccacccgcg taaataacat actaattgat gagggatatt gtcaacctct 4260 ttccaccata accgaccaag ggctgtgtga tgtgcaaact cccggccaag accaagaggt 4320 ggttgaggaa gacagacaaa ctgtttccac tgaatctgat atagcgctca aggaatacga 4380 agcggccacc gctgaaattc ctgacgctga agaggatgct ttgccctctc gggaacaact 4440 ctcatccaaa ccagttgaca cgtccgggga ggagatcccc aaacccagac ccccaagcaa 4500 tgaggttctg ggtgtttacc aaggacagcc catctatgct gaagacgtgc cacctggtac 4560 aaggcaaaag ctacgtgatg ccgccaaagc accttctacc ctattgtacg acaagacccc 4620 aaaacggtcc aaatctattt tgtccaggtt catagaaggg aataggtcct ctgtagaatc 4680 tgctgccccc tctaccgcta ctacatccaa tctaaccagg gagcagcttc gggaatatac 4740 ccgcattagg aataccctag gtttaacagc tgcaaaagag tacaaggctc gtcttttgtg 4800 aagacaacac cactcgcaca aatcggatcc tgggaaacag gcagaacttc ggttcgtaag 4860 ctcgggtgac tggaaggtgg gctgtcaacc caccaccgac tcaccgccgt atcgtattgt 4920 gtgtggccga tggatgatct tcgcattatc gccctctgtg ctctgtcatc aactatactg 4980 ttcaccgttg cgttggtgag tagttggtgt gcaagctgtt gtaagctcat agacgcagct 5040 tgttctgtgt aagctgcgac caaaaatatc ggggagcttt tgctcagtga gaggattaac 5100 gaccctcggt aatggctggt cctggcaggc ctgaataacc cgctatagga caactggaaa 5160 cccaccagtg atcaaataag gtagcttact tctgagctgt acactgtccc tgcgcaatcg 5220 gggtaaacaa ctataaccac ccaactcgat gaaatgagag tggaggtggc ggagtgggtg 5280 acttcgtgat gtacacccga gcgtcaggtt tgaagacgcc ataaaacaca acgagatgag 5340 aacctcgtta taaaagttcc tcggctgata cacccagtcg actggacctg ctggcatacc 5400 cttgatacga aacaagggct tctaagagcc actacctgtg atgcaaggta gggtaagagt 5460 cttagcaacc tctgtacttg gaagtggaca taaaccatag caatccagca gcatcccaga 5520 agagagtttt cctcactagg tgaaaacgtg ccacgggcct gtttcaagca atctagctct 5580 gcttgagaca gtatctcata gaagcaattc tatgggggga ctggattctg actgccgaca 5640 ctcgcaagag aagttcggca tccc 5664 //