ID EU332335; SV 1; linear; genomic RNA; STD; VRL; 5709 BP. XX AC EU332335; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 06ZZ4 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5709 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5709 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5709 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; 2296fb57f8623c90c6b8035cfa189956. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5709 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="06ZZ4" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Zhengzhou" FT /db_xref="taxon:2169986" FT CDS join(142..1161,1161..2747) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FL18" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FL18" FT /protein_id="ABY73709.1" FT /translation="MLLFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEFAEKEEEIEEARSLLRLLTAQKSKSGVEEAWTD FT FFLKSRGGVYAPLNCEPKSIELEAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFTAPTNIADLYEFTEVSKVETGLTKETTR FT VVNGEEETFTVPLVEDVRRIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT LEGLCTASGFESPFTILGLPEIAVTDGARLRKASSNINYLTQTHLGLVYKAPNASLHNA FT LVAIERRVFTVGKGDSAIYPPHPECDIFSETMGYFSESIVHKVGYCKTHTPQQLALSYS FT AGKRAQYFKAIESLKKEPYQIKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT FT RLKFNEKKIMHAIDGMFGSPTVLSGYDSFTQGRIIARKWQKFASPVAIGVDASRFDQHV FT SEQALKWEHGIYNGIFGDTELALALEHQLVNNIKMFVEDKMLTFKVRGHRMSGDINTSM FT GNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITERANEHLFSGMYDHFLKYGFNMVTE FT TPVYELGELEFCQSKPVRIGGNYRMVRRPDCIGKDSNTLLSMRNESDVKSYMSAVAQCG FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFEETPITTDNR FT MSYWESFGVDPKIQQLVERYYDNLTVSAQLQSVKVTTPHLQSILLSIPENNSHNEY" FT CDS 142..1164 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FL19" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FL19" FT /protein_id="ABY73710.1" FT /translation="MLLFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEFAEKEEEIEEARSLLRLLTAQKSKSGVEEAWTD FT FFLKSRGGVYAPLNCEPKSIELEAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFTAPTNIADLYEFTEVSKVETGLTKETTR FT VVNGEEETFTVPLVEDVRRIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT " FT CDS 2906..4846 FT /codon_start=1 FT /transl_except=(pos:3503..3505,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FL20" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FL20" FT /protein_id="ABY73714.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPGSIFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRATEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAKXVDSSTPEPKPTPAPTPAPAPEP FT KPEPTPAPPPKRFFEYVGTPVGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW FT GVGNYKGCVFTNFLATNTWRPGHKGLKLNDCQFTDGQIVERDAVMSFHVEASGKDACFY FT LMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMTRHSECPTRVNNIL FT IDEGYCQPLSTITDQGLCDVQTPGQDQEVVEEDRQTVSTESDIALKEYEAATAEIPDAG FT EDALPSREQLSSKPVDTSGEEIPKPRPPSNEVLGVYQGQPIYAEDVPPVARQKLRDAAK FT APSTLLYDKTPKRSKSILSRFIEGNRSSVESAAPSTATTSNLTREQLREYTRIRNTLGL FT TAAKAYKAQFS" FT CDS 2906..3505 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FL21" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B0FL21" FT /protein_id="ABY73711.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPGSIFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRATEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAK" FT CDS 2946..3407 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKL0" FT /protein_id="ABY73712.1" FT /translation="MAHEGGAVEQFGQWLWSSPIEQDPDDEMLDAQEEEGQVLYLDQNA FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLEHTRPPL FT RRALCLLNSTPRASNQPYLATLTHSPSANPPQSPSAQRRLEGPSSRRHR" FT CDS 4975..5097 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FL23" FT /protein_id="ABY73713.1" FT /translation="MDDLRVIALCALSPTILFTIVLVSSWCASCCKFIDAACSV" XX SQ Sequence 5709 BP; 1611 A; 1377 C; 1356 G; 1365 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgca atagagtcct acagttgctt gacacgcctg tagccccctt 120 cttccctttt ctcccaccac catgttgctt tttgagatgc ttatcggcgc cagtgtcaag 180 gctgtcaaag acttcatcag ccactgttat tctaggctaa agagtatata ctactctttt 240 aaaagatggc tgcttgaaat atccgggcaa tttaaggccc atgacgcctt tgtcaacatg 300 tgctttgggc acatagccga cattgaagac ttcgaggcgg aactcgctga ggagttcgct 360 gagaaggagg aggagatcga ggaagcgagg agcttgctcc gcttactgac tgcccagaag 420 tcaaaatctg gggtggagga ggcttggacc gacttctttt tgaagtcgag aggcggcgtt 480 tatgcgccac ttaactgcga gcctaaatcc attgagcttg aggcgaaagc ggataagctc 540 gaaaaactcc ttgaggacat gcatctattc gaggtgcgcg cggccaaaac ctacatcaaa 600 gagaagggcc gcggattcat caactgctgg aacgacttgc gatcacggtt gcagttggtg 660 aagtcggtta aggatgaggc caaagataac attaaggcgg cctccaaaat tggtgtcgag 720 ttcacagctc ctaccaatat tgctgatctc tacgagttta ctgaagtatc aaaggtagag 780 acaggtctaa ccaaggaaac caccagggtt gtcaacggtg aggaagagac attcacagta 840 cccctggttg aagatgtccg gagaatcaag gatgatgagg tcagcaggga gagtgcctcc 900 aattggatca gggaggttat taaattgaaa aattccaccc tttctgctga cgagctttcc 960 ctggcaacca tcgccaggta tgtagaaaat ttaggggaaa aatacaaact tgacattgct 1020 tccaaaacat atctcaagca atgtgcaatg atttctgtac caattccctc ccaaaaagac 1080 ataaaaacaa agatggtgat ccagagccct gctgcccgtg cacttcgtga gcgcgtggca 1140 gtccttgatt cccagggttt ttagaggggc tctgtaccgc ctccggtttt gaaagcccat 1200 ttaccattct tggcttaccg gagatagcgg tcacagacgg agcccggtta cgtaaggcta 1260 gtagtaatat taattacctt actcaaaccc atctaggtct agtatacaaa gctcctaatg 1320 catccctgca caatgcgctc gtagctatcg aaaggagggt gtttacagta ggaaaggggg 1380 attctgccat ttaccccccc cacccggaat gcgatatttt ctccgaaaca atgggctatt 1440 tttctgagtc cattgttcat aaggtgggat actgcaaaac acacactcca cagcaattgg 1500 ctcttagtta cagtgcaggg aaaagggccc agtatttcaa agccattgag tccttgaaga 1560 aggaacctta tcaaattaag gactcaaatg ttcaggcatt cctcaagaag gagaaacact 1620 ggatgaccaa agccatcgcc ccgcgcctga tttgcccccg ctccaagcgg tacaacatca 1680 tccttggaac tcgtttaaag ttcaacgaga agaagatcat gcatgccatt gacggtatgt 1740 ttggatcccc cactgtgctt tcaggctatg acagctttac ccaaggcaga atcatagcca 1800 gaaagtggca aaagtttgca tcccccgttg ctatcggtgt tgatgctagc cgctttgacc 1860 aacacgtgtc tgagcaggcg cttaagtggg aacacgggat atacaatggc atttttggcg 1920 acactgaatt ggccctcgcc ctcgaacatc aacttgtgaa taatatcaaa atgttcgttg 1980 aagacaagat gctaactttc aaagttaggg gccacaggat gtcaggggac ataaatacca 2040 gcatgggaaa caagctcatc atgtgtggca tgatgcacgc ttactttaag aagctgggtg 2100 ttgaagcaga actatgtaac aatggagatg attgtgtcat cataactgag agggctaatg 2160 aacacctttt cagtggaatg tatgaccatt tcctcaaata cggcttcaac atggtgacgg 2220 aaaccccggt ttacgaactc ggggagcttg aattttgcca atccaaaccc gtcagaattg 2280 gtggtaatta tagaatggtc cgcagacccg attgcatagg aaaagatagc aacacacttt 2340 tgagcatgcg caatgaatcc gacgtcaaaa gttatatgtc ggctgtggct cagtgtggtc 2400 tcgttttgaa tgcgggtgta cccatactcg aaagcttcta ccgttgcctg tacagaagct 2460 cggggtacaa aaaagtaagc gaggaataca tcaaaaacgt catatcatat ggaacagatg 2520 aacgccttca aggtagacgt acctttgagg agacacctat caccacagac aatcgtatgt 2580 catattggga atcatttgga gttgacccta agattcaaca acttgtcgag aggtactacg 2640 acaatcttac ggtaagtgcc caactccaga gtgtgaaggt gacaactcca catctgcaat 2700 caatcctcct ctccattccg gagaacaact cgcacaacga atattaatta ccaaatctta 2760 gccgggtttg ggatagggtt tatcgctagt attccctgta cattagctct cacgtacttt 2820 atttacaata aagtttccaa caccactaga gaggtggtga ttgataccta caataaagct 2880 tcagacacca ctagagaggt ggtgaatgaa ttcagtaggc cgtagaggac ctagaagagc 2940 aaacaatggc acacgaaggc ggcgccgtcg agcaattcgg ccagtggttg tggtccagcc 3000 caatcgaaca ggacccagac gacgaaatgc tcgacgcgca agaggaagaa ggccaggttc 3060 tatatttgga ccaaaacgcg gggctgaggt attcgtattc tcagtcgaca accttaaggc 3120 caactcctcc gggatcctca aattcggtcc cgatttatcg caatgcccag cggtttcaga 3180 cggagtactt aagtcctacc acaattacaa gatctcaagt atcaacgttg agtttagaac 3240 acacgcgtcc gccactacgt cgggcgctat gtttattgaa ctcgacacct cgtgcaagca 3300 atcagcctta tctagctaca ttaactcatt caccatcagc aaatccgcct caaagtcctt 3360 ccgcgcaacg gagattggag ggacccagtt ccaggcgaca tcggtgaatc aattcttttt 3420 attgtataag gcaaatggca ctaccactga cattgcaggg cagttcatta tcaggattga 3480 gctccacctg atgactgcca aataggtaga ctcctcaaca ccggaaccaa agcccacacc 3540 agccccaaca cctgcccctg cccctgagcc aaaaccagag cccacacctg cacctccccc 3600 caagcgtttc tttgagtatg ttggaactcc agttggggtc atatctactc gagaaaacac 3660 tgatagtata tcggtgtcta agctcggcgg ccagtcgatg cagtatattg aaaacgagaa 3720 gtgtgaaacc aaaaccatcg actccttctg gagcacaaac aacaacgttt cggcacaagc 3780 tgccttcgtt tttccagtac cagaggggtc gtacagcgtg aacatctcgt gtgaaggttt 3840 acaatccgtt gaccacatcg gtggcaatga ggatggctat tggattgggc tcattgccta 3900 ttccaattcg tcgggtgaca actggggtgt aggtaactat aaagggtgtg tgtttacaaa 3960 ttttctggca acgaatacct ggagaccagg acacaaaggt ttaaaactta atgattgcca 4020 gttcacagac ggacaaatag ttgaaaggga tgcagttatg tctttccacg tagaagcttc 4080 tggcaaagat gcctgctttt acctgatggc tcccaagaca atgaaaacag acaagtacaa 4140 ctatgttgtc tcgtatggag ggtacacgaa caaaagaatg gaattcggta ccatctctgt 4200 aacatgtgat gaatccgatg ttgaggcact tcgcatgact cggcactctg agtgccctac 4260 ccgcgtaaat aatattttaa ttgatgaggg atattgtcaa cctctttcca ccataaccga 4320 ccaagggctg tgtgacgtgc aaactcccgg ccaagatcaa gaggtggttg aggaagacag 4380 acaaactgtt tccactgaat ctgatatagc gctcaaggag tatgaagcag ccaccgctga 4440 aatccctgac gctggagagg atgctttgcc ctctcgggaa caactctcat ctaaaccagt 4500 tgacacgtca ggggaggaga tccccaaacc cagacctcca agcaatgagg ttctgggtgt 4560 ttaccaagga cagcccattt atgctgaaga cgtgccacct gttgctaggc aaaagttacg 4620 tgatgccgcc aaagcacctt ctaccctgtt gtacgataag acccccaaac ggtccaaatc 4680 tattttgtcc aggtttatag aagggaatag gtcctctgta gaatctgctg ccccctctac 4740 tgctactacc tccaatctta ctagggagca gcttcgggaa tatacccgca ttaggaatac 4800 cttaggttta acagctgcaa aggcgtacaa ggctcaattc tcgtgaagac aacaccactc 4860 gcacaaatcg gatcctggga aacaggcaga acttcggttc gtaagctcgg gtgactggaa 4920 ggtgggctgt caacccacca ccgactcacc gccgtatcgt actgtgtgtg gccgatggat 4980 gatcttcgcg ttatcgccct ctgtgctctg tcaccaacta tactgtttac cattgtgttg 5040 gtgagtagtt ggtgtgcaag ctgttgtaag ttcatagacg cagcttgttc tgtgtaagct 5100 gcaaccaaaa atatcgggca gcttctgctc agtgagagga ttaacgaccc tcagtaatgg 5160 ctggtcctgg caggcctgaa taacctgcta taggacaact ggaaacccac cagtgatcaa 5220 ataaggtagc ttacttctga gctgtacact gtccctgcgc aatcggggta aacaactata 5280 accacccaac tcgatgaaac gagagtggag gtggcggagt gggtgacttc gtgatgtaca 5340 cccgagcgtc aggtttgaag acgccataaa acacaacgag atgagaacct cgttataaaa 5400 gttcctcggc tgatacaccc agtcgactgg acctgctggc atacccttga tacgaaacaa 5460 gggcttctga gagccactac ctgtgatgca aggtagggta agagtcttag caacctctgt 5520 acttggaagt ggacataaac catagcaatc cagcagcatc ccagaagaga gttttcctca 5580 ccaggtgaaa acgtgccacg ggcctgtttc aagcaatcta gctctgcttg aaacagtatc 5640 ccatagaagc aattctacgg ggggactgga ttctgactgc cgacactcgc aagagaagtt 5700 cggcatccc 5709 //