ID EU332334; SV 1; linear; genomic RNA; STD; VRL; 5709 BP. XX AC EU332334; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 06WH1 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5709 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5709 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5709 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; 0d9aafe14c1e60293ccce5b5c1f70713. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5709 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="06WH1" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Wuhan" FT /db_xref="taxon:2169986" FT CDS join(142..1161,1161..2747) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FL12" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FL12" FT /protein_id="ABY73703.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT LEGLCTASGFESPFTILGLPEIAVTDGARLRKVSSNINYLTQTHLGLVYKAPNASLHNA FT LVAIERRVFTVGKGDSAIYPPHPEYDIFSETMGYFAESIVNKVGYCKTYTPQQLALSYS FT AGKRAQYFKAIESLKKEPYQMKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT FT RLKFNEKKIMHAIDSVFGSPTVLSGYDSFTQGKIIASKWQKFASPVAIGVDASRFDQHV FT SEQALKWEHGIYNGIFGDNELALALEHQLVNNIKMFVEDKMLTFRVKGHRMSGDINTSM FT GNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITERANEHLFGGMYDHFLKYGFNMVTE FT TPVYELGELEFCQSRPVRIGGNYRMVRRPDCIGKDSNTLLSMRNESDVKSYMSAVAQCG FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFEETPITTDNR FT MSYWESFGVDPKIQQLVERYYDNLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY" FT CDS 142..1164 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKK7" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKK7" FT /protein_id="ABY73704.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT " FT CDS 2906..4846 FT /codon_start=1 FT /transl_except=(pos:3503..3505,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FL14" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FL14" FT /protein_id="ABY73708.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSLTISKSASKSFRATEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAKXVDSSTPEPKPTPAPTPAPAPEP FT KPEPTPAPPPKRFFEYVGTPVGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEASGKDACFY FT LMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMTRHSECPTSTNNIL FT IDEGYCQPLSTITDQGLCDVQTPSQDQEVVEEDRQTVSSESDIALKEYEAATAVIPDAE FT EDALPSREQLSSKPVDTSGAKIPRSKSPTNEVLGVYQGQSIYAEDVPPGTRQKLRDASK FT APSTLLYDKTPKRSKSILSRFIEGNRSSVESAAPSTATTSNLTREQLREYTRIRNTLGL FT TAAKAYKAQFS" FT CDS 2906..3505 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FL15" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B0FL15" FT /protein_id="ABY73705.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSLTISKSASKSFRATEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAK" FT CDS 2946..3407 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKL0" FT /protein_id="ABY73706.1" FT /translation="MAHEGGAVEQFGQWLWSSPIEQDPDDEMLDAQEEEGQVLYLDQNA FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLEHTRPPL FT RRALCLLNSTPRASNQPYLATLTHSPSANPPQSPSAQRRLEGPSSRRHR" FT CDS 4975..5097 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FL17" FT /protein_id="ABY73707.1" FT /translation="MDDLRVIALCALSSTVLFTIALVSSWCASCCKFIDAACSV" XX SQ Sequence 5709 BP; 1612 A; 1392 C; 1361 G; 1344 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgca acagagtcct acagttgcct gacacgcctg tagccccctt 120 cttccccatt cactcgccat catggtgttc tttgagatgc tcatcggtgc cagcgttaag 180 gccgtcaaag acttcatcag ccattgctat tctaggctca agagtatata ctactctttc 240 aagagatggc tgcttgaaat atccgggcaa ttcaaggccc atgacgcctt tgtcaacatg 300 tgctttgggc acatcgctga catcgaggac ttcgaggcgg aactcgctga ggagtacgcc 360 gagaaggagg aggagatcga ggaagcgcga agcttgctcc gcttactaac tgcccagaag 420 tccaaatctg gggtggatga ggcttggacc gacttctttt tgaagtcgag aggcggcgtt 480 tatgcgccac ttaactgcga gccaaagtcc atagagcttg atgccaaagc ggacaagttg 540 gagaagctcc ttgaggacat gcacctgttt gaggtgcgcg cggccaagac ctacattaag 600 gagaaaggcc gtggattcat caattgctgg aatgaccttc gatcaaggtt gcagttggtg 660 aagtctgtca aagacgaggc caaagacaac ataaaagcgg cctccaagat tggtgtggag 720 ttctctgctc caaccaatat tgctgatctc tacacattca ctgaggttac aaaggtagag 780 acaggtctta ccaaggaaac aactagggtt gtcaacgggg aggaggagac ctccaccgta 840 cctctggttg aggacgtccg gaagatcaag gacgatgaag tcagtaggga gagtgcctcc 900 aattggatca gagaggtaat taaactgaaa aactccaccc tttctgctga cgagctttcc 960 ctggcaacca tcgccaggta tgtagaaaat ttaggggaga aatataaact tgacattgca 1020 tcaaaaacat atctcaagca atgtgcaatg atttctgtgc caatcccctc ccaaaaagac 1080 ataaaaacaa agatggtgat ccaaagccct gctgcccgtg cacttcgtga gcgcgtggca 1140 gttcttgact cccagggttt ttagaggggc tctgtaccgc ctccggtttt gaaagcccat 1200 ttaccattct tggcttaccg gagatagcgg tcacagacgg agcccgactc cgtaaggtta 1260 gtagtaatat taattacctt acccagaccc atctaggcct tgtatataaa gcacccaatg 1320 catctctgca caacgcgctc gtagctatcg aaaggagagt gtttacagta ggaaaggggg 1380 attctgctat ctaccccccc cacccggaat atgatatttt ctcagagaca atgggttact 1440 ttgctgagtc catagtcaac aaggtgggat actgcaaaac atacacccct cagcaactgg 1500 ctcttagtta cagtgcaggg aagagggccc agtacttcaa agccattgag tccttaaaga 1560 aggaaccata ccaaatgaag gactcaaacg tgcaggcatt cctcaagaag gagaaacact 1620 ggatgaccaa agccatcgcc ccgcgcctga tttgcccccg ctccaagcgg tacaatatca 1680 tcctaggaac tcgtttgaaa ttcaacgaga agaagatcat gcatgctatt gatagtgtgt 1740 ttggatcccc cactgtgctt tcaggctatg atagctttac ccaaggcaaa atcatagcca 1800 gtaagtggca aaagtttgca tcacccgttg ctattggtgt tgatgctagc cgcttcgacc 1860 aacacgtgtc tgagcaggcg cttaagtggg aacacgggat atacaatggc atttttggcg 1920 acaatgaatt ggcccttgct ctcgaacacc agcttgtaaa taatattaag atgttcgttg 1980 aggacaagat gttaaccttc agagttaagg gtcacagaat gtcaggggac attaacacca 2040 gcatgggaaa caagctcatc atgtgcggca tgatgcacgc ttactttaag aagctgggtg 2100 ttgaagcgga actttgcaat aatggagatg attgtgtcat cataactgaa agggctaatg 2160 aacacctttt cggtggaatg tatgaccatt tccttaaata cggcttcaac atggtgacgg 2220 aaaccccggt ttacgaactc ggggaacttg aattttgcca atctagaccc gtcagaattg 2280 gtggcaatta tagaatggtc cgcaggcccg actgcatagg gaaagatagc aacacacttt 2340 tgagcatgcg caatgaatcc gacgtcaaaa gctatatgtc ggctgtggct cagtgtggtc 2400 tcgttttgaa tgcgggtgta cccatactcg aaagcttcta ccgctgcctg tacagaagct 2460 cggggtacaa gaaagtaagt gaggagtata tcaaaaacgt catatcatat ggaacagatg 2520 agcgccttca aggtagacgt acctttgagg agacacctat caccactgac aatcgaatgt 2580 catattggga atcatttgga gttgacccta agattcaaca acttgtcgag aggtactacg 2640 acaatcttac ggtaagtgcc caactccaaa gtgtgaaggt gacatctcca catctgcaat 2700 caatcctcct ctccattccg gagaacaact cgcacaacga atattaatta ccaaatctta 2760 gccgggtttg ggatagggtt tatcgctagt attccctgta cattagctct cacgtacttt 2820 atttacaata aagtttcaaa caccactaga gaggtggtga ttgataccta caataaagct 2880 tcggacacca ctcgtgaggt ggtgaatgaa ttcagtaggc cgtagaggac ctagaagagc 2940 aaacaatggc acacgaaggc ggcgccgtcg agcaattcgg ccagtggttg tggtccagcc 3000 caatcgaaca ggacccagac gacgaaatgc tcgacgcgca agaggaagaa ggccaggttc 3060 tgtatttgga ccaaaacgcg gggctgaggt attcgtattc tcagtcgaca accttaaggc 3120 caactcctcc gggatcctca aattcggtcc cgatttatcg caatgcccag cggtttcaga 3180 cggagtactt aagtcctacc acaattacaa gatctcaagt atcaacgttg agtttagaac 3240 acacgcgtcc gccactacgt cgggcgctat gtttattgaa ctcgacacct cgtgcaagca 3300 atcagcctta tctagctaca ttaactcact caccatcagc aaatccgcct caaagtcctt 3360 ccgcgcaacg gagattggag ggacccagtt ccaggcgaca tcggtgaatc aattcttttt 3420 attatacaag gcaaatggca ctaccactga cattgcaggg cagttcatta tcaggattga 3480 gcttcacctg atgactgcca aataggtaga ctcctcaaca ccggaaccaa agcccacacc 3540 agccccaaca cctgcccctg cccctgagcc taaaccagag cctacacctg cacctccccc 3600 caagcgtttc tttgagtatg ttggaactcc agttggggtc atatctactc gagaaaacac 3660 tgacagtata tcagtgtcta agctcggtgg ccagtcgatg cagtatatcg agaacgagaa 3720 gtgtgaaacc aaaactatcg actccttctg gagcacaaac aacaacgttt cggcacaagc 3780 tgccttcgtt tttccagtgc cagaggggtc gtacagcgta aacatctcgt gtgaaggttt 3840 acaatccgtt gaccacattg gtggcaatga ggatggctat tggattgggc tcattgccta 3900 ttccaattcg tcgggtgaca actggggtgt aggtaactat aaagggtgtg tgtttacaaa 3960 ttttctggca acgaatacct ggcgaccagg acacaaagat ttaaaactta acgattgcca 4020 gttcacagac ggacaaatag ttgaaaggga tgcagttatg tctttccatg tagaggcttc 4080 aggcaaagat gcctgtttct acttgatggc tcccaaaaca atgaaaacag ataagtacaa 4140 ctatgttgtc tcgtatggag ggtatacaaa caaaagaatg gagtttggta ccatctctgt 4200 tacatgtgat gaatccgatg ttgaggcact ccgcatgact cggcactcag agtgccccac 4260 cagcacaaac aacattttaa ttgatgaggg atactgtcaa cccctctcca ccataaccga 4320 ccaaggactg tgtgatgtgc aaactcccag ccaagatcaa gaggtggttg aggaggacag 4380 acaaactgtt tccagtgaat ctgatatagc gctcaaggaa tatgaagcag ccactgctgt 4440 gattcctgac gctgaagagg atgccttacc ctctcgggaa caactctcat ccaaaccagt 4500 tgacacgtct ggggctaaaa tccccagatc caaatcaccg accaatgagg ttctcggtgt 4560 ttaccaagga cagtccatct atgctgaaga cgtgccacct ggtacaaggc aaaagctacg 4620 agatgcctcc aaagcacctt ctaccctgtt gtacgacaag accccaaaac ggtccaaatc 4680 aattttgtcc aggttcatag aagggaacag gtcctctgta gaatctgctg ccccctctac 4740 cgctactaca tccaatttaa ccagggagca gcttcgggaa tatacccgca ttaggaatac 4800 cttaggttta acagctgcaa aggcgtacaa ggctcaattc tcgtgaagac aacaccactc 4860 gcacaaatcg gatcctggga aacaggcaga acttcggttc gtaagctcgg gtgactggaa 4920 ggtgggctgt caacccacca ccgactcacc gccgtatcgt actgtgtgtg gccgatggat 4980 gatcttcgcg ttatcgccct ctgtgctctg tcatcaactg tacttttcac cattgcgttg 5040 gtgagtagtt ggtgtgcaag ctgttgtaag ttcatagacg cagcttgttc tgtgtaagct 5100 gcaaccaaaa atatcgggga gcttctgctc agtgagagga ttaacgaccc tcggtaatgg 5160 ctggtcctgg caggcccgaa taacctgcta taggacaact ggaaacccac cagtgatcaa 5220 ataaggtagc ttacttctga gctgtacact gtccctgcgc aatcggggta aacaactata 5280 accacccaac tcgatgaaac gagagtggag gtggcggagt gggtgacttc gtgatgtaca 5340 cccgagcgtc aggtttgaag acgccataaa acacaacgag atgagaacct cgttataaaa 5400 gttcctcggc tgatacaccc agtcgactgg acctgctggc atacccttga tacgaaacaa 5460 gggcttctga gagccactac ctgtgatgca aggtagggta agagtcttag caacctctgt 5520 acttggaagt ggacataaac catagcaatc cagcagcatc ccagaagaga gttttcctca 5580 ccaggtgaaa acgtgccacg ggcctgtttc aagcaatcta gctctgcttg aaacagtatc 5640 ccatagaagc aattctatgg ggggactgga ttctgactgc cgacactcgc aagagaagtt 5700 cggcatccc 5709 //