ID EU332333; SV 1; linear; genomic RNA; STD; VRL; 5660 BP. XX AC EU332333; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 06KM25 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5660 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5660 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5660 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; 1c3a2eba03adbd635411bed0a20518a9. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5660 FT /organism="Barley yellow dwarf virus PAV" FT /host="oat" FT /isolate="06KM25" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Kunming" FT /db_xref="taxon:2169986" FT CDS join(140..1156,1156..2742) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FL06" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FL06" FT /protein_id="ABY73697.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWIDF FT FLKSRGGVYAPPSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYVKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLSADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCKTYPAQLLANSYSA FT GKRAMYHKAIASLKTVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDSELALALEHQITNNIKMFVEDKMLRFRVRGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTFEDTPITNHSRM FT SYWESFGVDPKIQQIVERYYDNLTVSAQLQSVKVTTPHLQSILLSIPENHSQNDY" FT CDS 140..1159 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FL07" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FL07" FT /protein_id="ABY73698.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWIDF FT FLKSRGGVYAPPSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYVKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLSADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF" FT CDS 2856..4808 FT /codon_start=1 FT /transl_except=(pos:3456..3458,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FL08" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B0FL08" FT /protein_id="ABY73702.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFVELDTACKQSALASYINSFTISRTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVHLMTAKXVDSSTPEPKPAPEPTPTPQPT FT PAPQPAPEPTPAPAPKRFFEYIGIPTGTISTRENSDSISVSKLGGQSMQYIENEKCETK FT VIDSFWSTNNYVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS FT SGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGT FT DACFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAERITRHAKTPIR FT SKHILVSEQYEQPLPTIIDQGLCDVQTPEQEQTLVDEEDKQTVSTEPDIALMEYEAATA FT EIPDAEEDVLPSKEQLSSKPVDTSGNKIPKPKEPEVLGTYQGQNIYPEDVPPIARQKLR FT EAANAPSTLLYEKTPKKSNNFLTRFVDANRSPTTPAAPTVSTVSNMTREQLAEYTRIRK FT SLGLTAAKEYKAQFQ" FT CDS 2856..3458 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FL09" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B0FL09" FT /protein_id="ABY73699.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFVELDTACKQSALASYINSFTISRTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVHLMTAK" FT CDS 2899..3360 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FL10" FT /protein_id="ABY73700.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA FT GLRYSYSQSTTLKPTLPGQSNSALVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL FT RPALSLLNSTPRANNQPWLATLIPSQSAGPPQRSSEPKRLTGRNSRNQR" FT CDS 4915..5040 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="GOA:A5A2Q5" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:A5A2Q5" FT /protein_id="ABY73701.1" FT /translation="MDDLHVIAVCIFALTVLTGLGAVIGCCAGCLLPPPSFRSSV" XX SQ Sequence 5660 BP; 1673 A; 1364 C; 1374 G; 1249 T; 0 other; tgaagattga ccatctcaca aaagctgcta cgtgcttgta gcacactaca cactcgtttt 60 gtattcgaga agtagttgca acaacggttc ccttattgcc tgacaagcta agggccaccc 120 ttctatcccc accgccatca tgttcttcga aatacttata ggagctagcg ctaaggcggt 180 aaaagacttc atcagtcatt gttactctcg tttgaaatca atatattatt cttttaaacg 240 atggctgatg gagatatctg ggcagtttaa ggcccatgac gcctttgtca acatgtgctt 300 cgggcacatg gctgacattg aggacttcga ggcagagctc gctgaggagt ttgcagagag 360 ggaggatgag gtggaagagg caagaagcct cttgaaactg ctggtcgccc aaaaatctaa 420 aactggggtg accgaggctt ggatcgactt cttcttgaag tcgagaggtg gcgtctatgc 480 gccaccttcc tgcgagccta ccaggcagga gctagaagtc aagagcgaga agctcgaaaa 540 acttctagaa gaacagcacc aattcgaggt gcgagcggcc aagaaatacg ttaaggaaaa 600 gggccgcggc ttcatcaact gctggaacga cttgcgaagt cgtctcaggc tggtgaagga 660 cgtcaaggac gaggcgaagg acaacgctag agctgctgcc aagatcggag cagaaatgtt 720 cgcccccgtt gacgtgcaag acctatacag ctttacagag gtcaagaagg tggagaccgg 780 cctcatgaaa gaggtcgtga aagagagaaa cggcgaagaa gagaaacacc tcgagcccat 840 catggaagag gtgaggtcca tcaaagatac cgccgaagcc agggacgctg cctccacctg 900 gataacagag acagttaagc tgaagaactc tacgcttagc gcagatgaat tgtctctggc 960 caccatcgcc cgttacgttg aaaacgtagg ggacaaattc aaactcgaca ttgctagcaa 1020 gacatatcta aagcaagtcg catcgatgtc tgtgccaatt ccaactaaca aggacattaa 1080 attaaagatg gtgctgcaga gtcctgaagc acgtgccagg cgggaacgca tggacgtgct 1140 tgactctgtg ggtttttaga ggggctctgt accgcctctg gttttgagag cccattcccc 1200 attctcgggc tgccagagat tgcggtcaca gacggagccc ggctccgtaa ggttagtagt 1260 aatattagat acctcagcca aacccaccta ggtcttgtat ataaggcgcc aaatgcctcc 1320 ctgcacaatg cgcttgtagc agtggagaga agagttttta cagtaggaaa gggggacaaa 1380 gcaatctacc ccccccgccc agagcatgac attttcactg atacaatgga ttacttccaa 1440 aaatccatta tagaagaggt gggatactgc aagacatatc cagcgcaact cctggctaac 1500 agctatagcg caggaaaaag ggccatgtat cacaaagcca ttgcatcttt gaaaactgtc 1560 ccatatcatc agaaggatgc aaatgtacaa gctttcctga agaaggaaaa acattggatg 1620 accaaggaca tcgccccccg attgatttgc ccccgcagca agcggtataa catcatccta 1680 ggaactcgtt taaaattcaa cgagaagaag atcatgcacg ctatcgatag tgtgttcgga 1740 tcccccactg tactttctgg ctatgacaac tttaaacaag gaagaatcat agccaagaag 1800 tggcaaaagt ttgcatgccc cgtcgccatc ggcgtggatg ctagccgctt tgaccaacac 1860 gtgtcagagc aggcgcttaa gtgggaacac gggatataca atgggatctt cggagacagc 1920 gaactggctc ttgcacttga acaccaaatc accaacaaca tcaagatgtt tgttgaagat 1980 aaaatgctta ggttcagggt gagaggccat agaatgtccg gtgacattaa taccagcatg 2040 ggaaacaagc tcataatgtg cggcatgatg catgcatatt tcaagaagct gggtgttgaa 2100 gctgaacttt gcaacaacgg agacgattgt gtcatcatca ctgatagagc caatgagaag 2160 ctctttgacg gcatgtacga ccatttcctc cagtatggct tcaacatggt gactgaaaaa 2220 ccagtttacg aactggagca attggagttt tgccagtcaa aaccggtctc tattaatgga 2280 aagtatagaa tggtaagaag gcccgatagc ataggcaaag acagcacaac actactgagc 2340 atgctcaacc aatccgacgt caagagctac atgtcggctg tggctcagtg tggtttggtg 2400 cttaacgctg gagtacccat acttgaaagt ttctataaat gcctatatag aagctcaggg 2460 tacaagaaag tgagtgagga attcatcaaa aacgtcattt cgtatggaac agatgagaga 2520 ttacaaggta gacgtacctt tgaagacaca cctatcacta atcatagtag gatgtcctac 2580 tgggaatcat tcggagttga ccctaagata caacaaattg tcgagcggta ctacgacaat 2640 cttacggtga gtgcccaact ccagagtgtg aaggtgacta ctccacatct gcaatcaata 2700 ctactttcca taccggaaaa ccactcacaa aacgactact aattaccaaa tcttagctgg 2760 gtttggaata gggtttatag tttctattcc ctgtacatta gctctctcct actttatcta 2820 taataaagtt tctgacacca ctagggaggt ggtgaatgaa ttcagtaggc cgtagaggac 2880 ctagacgcgc aaatcaaaat ggcacaagaa ggaggcgccg tagaacagtt cggccagtgg 2940 ttgtggtcca acccaatcga gcaggaccca gacgacgaaa tggtcgacgc aagggaagag 3000 gaggggcaaa tcctgtattt agaccaacag gcgggactga ggtattcgta ttctcagtcg 3060 acaaccttaa agccaactct tccggggcaa tcaaattcgg ccctagtcta tcgcaatgcc 3120 cagcgctttc agacggaata cttaagtcct accaccgtta caagatcaca agtatccgtg 3180 ttgagtttaa gtcacacgcg tccgcaacta cggccggcgc tatctttgtt gaactcgaca 3240 ccgcgtgcaa acaatcagcc ctggctagct acattaattc cttcacaatc agcaggaccg 3300 cctcaaaggt cttcagagcc gaagcgatta acgggaagga attccaggaa tcaacgatag 3360 accagttttg gatgctctac aaggccaatg gaaccaccac tgacacggca ggacaattca 3420 ttatcacgat gagtgtccac ttgatgacgg ccaaataggt agactcctca acaccggaac 3480 cgaaacctgc accagaacct acaccaaccc cgcagccaac gccagctcca cagcccgcac 3540 ccgaaccgac tcctgcacca gcccctaaaa gattctttga gtatatcggc attccaaccg 3600 gtacaatctc aacaagagaa aactctgata gtatttctgt cagcaagctc ggtgggcaat 3660 cgatgcaata catagagaat gagaagtgtg aaacaaaggt cattgactcc ttctggagca 3720 ctaacaacta cgtgtctgca caggcagcct tcgtttaccc agtgccagaa ggatcataca 3780 gtgtgaacat ttcgtgcgaa ggcttccaat ccgttgacca cataggaggc aacgaggatg 3840 gttattggat tggtttaatt gcctactcca attcgtcagg agacaattgg ggggtaggca 3900 actacaaagg gtgcagtttc aagaacttct tggcaaccaa tacttggaga ccaggccata 3960 aggatctcaa gttgaacgat tgccagttca cagatggaca aatagttgag agggatgccg 4020 tgatgtcttt ccatgtggaa gcgacaggta ctgacgcctg tttctatctc atggctccca 4080 aaacaatgaa aactgacaaa tacaactatg ttgtctcgta tggagggtac acaaacaaaa 4140 ggatggaatt tggtaccata tctgtgacat gtgatgaatc cgatgttgag gcagaacgca 4200 taacaaggca cgctaaaaca cccatacgtt ccaaacatat tcttgtgtct gaacagtatg 4260 agcagccttt acccaccata atcgatcaag gcttgtgtga tgtgcaaact cccgagcaag 4320 aacaaacact ggtggatgaa gaagacaaac agactgtttc cacagaacct gatatagcac 4380 tcatggaata tgaagctgca acagccgaaa ttccagatgc tgaagaggat gttttgccct 4440 ccaaggaaca gctgtcttct aaaccggtgg acacatccgg caacaaaata ccaaaaccca 4500 aggaacctga agtacttgga acataccagg gacaaaatat ttaccctgaa gacgtgccac 4560 caattgcgcg gcagaagcta cgcgaagccg caaatgcacc ctccacatta ctctacgaga 4620 aaactcccaa gaagagcaac aatttcttga ctcgttttgt ggatgcgaat aggtccccta 4680 caactccagc tgccccaaca gtgtcaactg tatcaaacat gacaagggaa cagcttgcgg 4740 agtacactag aattaggaaa tcccttggac tcacagcagc gaaggaatac aaggcgcaat 4800 ttcagtgaag gtaacaccac tagcacaaat cggatcctgg gaaacaggca gaactacggt 4860 tcataagctc gggtaggccg tcaacctacc gccgtatcgt attgtgtttg gccgatggat 4920 gacctccacg ttatcgccgt ttgtattttt gctctaactg tgttgacagg gttaggcgcg 4980 gtgatcggct gttgtgccgg ttgccttctc ccccctccct ccttccgctc ttctgtttaa 5040 gcaaaatctc tcggtctgtg cgagagaaac tcaaaaatat cggggagctt cagctcagtg 5100 aggggattaa cgacccccag taaaggctgg tcttggcgga cttgaataac ccgctataag 5160 acggagtggt aaccgccact gatcaaatgg tgaacatgct tctgtgttgt acactgcccc 5220 ggagcctacc gggttaacaa agctatccca ccagctcaat gaaatgagag cggagtgggc 5280 ggagtgggtg acttcgagat gtacacccga tcgtcaggat tgaagacgtt aaaactcgac 5340 gacctagtgc aagtcgttaa actgactagg gtggatacac cacacccggc ctaacttgta 5400 ggcataccca cgatacgaaa cgtgggtctc ttggagccac cgcctgtgat gcaaggtggg 5460 gtatgagtct tagcaagctc tgtgccagga gatggacaaa ccatagcaat cctgcaagtc 5520 atcttggcga accataggtg aaccgtgcca cgggcctgcc taccgaaagg aaaagcagta 5580 tccgacacag caatgtgttg ggggttacac ccttcggggt actcttaacg ctgacactcg 5640 aaagagcagt tcggcaaccc 5660 //