ID EU332332; SV 1; linear; genomic RNA; STD; VRL; 5674 BP. XX AC EU332332; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 06KM14 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5674 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5674 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5674 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; 1848a665f06a3a554e72aa6448b39263. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5674 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="06KM14" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Kunming" FT /db_xref="taxon:2169986" FT CDS join(140..1156,1156..2742) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FL00" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FL00" FT /protein_id="ABY73692.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYFSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAQDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMREVVKE FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPVLGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCKTYLAQLLANSYSA FT GKRAMYHKAIASLKAVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDNELALALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRVNEELFSGMYDHFLQYGFNMVTEK FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYSETPITNHSRM FT SYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENHSQNEY" FT CDS 140..1159 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FL01" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FL01" FT /protein_id="ABY73691.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYFSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAQDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMREVVKE FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF" FT CDS 2856..4808 FT /codon_start=1 FT /transl_except=(pos:3456..3458,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FL02" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B0FL02" FT /protein_id="ABY73693.1" FT /translation="MNSVGRRGPRRANQNGPRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISKTASKVFRSEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAKXVDSSTPEPKPAPEPTPTPQPT FT PAPQPAPEPTPAPVPKRFFEYIGTPTGTISTRENSDSISVSKLGGQSMQYIENEKCETK FT VIDSFWSTNNNVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS FT SGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGT FT DACFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAERITRHAETPIR FT SKHILVSERYVEPMPTIIDQGLCDVKTPEQEQTLVDEEDKQTVSTEPDIALQEYEAATV FT EVPDAEEDVLPSKEQLSSKPMDTSGNKIPKPKEPEVLGTYQGMHIYPEDVPPLARQKLR FT EAAKAPTTLLYERTPKKSSNILTRYLESNRSPTTPAAPSVSTVSNMTREQLAEYTRIRK FT SLGLTAAKEYKAQFQ" FT CDS 2856..3458 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:Q2V8U5" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q2V8U5" FT /protein_id="ABY73694.1" FT /translation="MNSVGRRGPRRANQNGPRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISKTASKVFRSEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK" FT CDS 2899..3360 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FL04" FT /protein_id="ABY73695.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA FT GLRYSYSQLTTLKPTLPGQSNSAPVYRNAQRFQTEYSSPTIVTRSQVSELSLSHTRPPL FT RPALSLLNSTPRASNQPWVATLTHSPSARPPPRSSGQRQLTGRNSRNQR" FT CDS 4915..5043 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKL7" FT /protein_id="ABY73696.1" FT /translation="MEDLHVIAACMLALTVLSGVGAILSCCKWCFSSSFPSPRASL" XX SQ Sequence 5674 BP; 1665 A; 1363 C; 1392 G; 1254 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cacccgtttt 60 gtgttcggga agtagttgcg aaaacggtcc ccttattgcc tgacaagcta agggccaccc 120 ttcttacccc accgccatca tgtttttcga aatactaata ggagctagcg ctaaggcggt 180 taaggacttt attagccatt gttactctag actaaaatct atatattttt catttaaacg 240 atggctaatg gagatatctg ggcaattcaa ggcccatgac gcctttgtca acatgtgctt 300 tgggcatatg gcagacatag aggacttcga ggcggaactc gctgaggagt tcgccgagag 360 ggaagatgag gtggaagagg cgaggagcct cttgaaactg ctggtcgccc aaaaatctaa 420 aactggggtg accgaggctt ggaccgactt ctttacgaag tcgagaggtg gcgtttatgc 480 gccactttcc tgcgagccta ccaggcagga gctggaagtt aagagcgaga agctcgaaaa 540 acttctagaa gaacagcacc aattcgaggt gcgagcggcc aagaaataca ttaaggaaaa 600 gggccgcggc ttcatcaact gctggaacga cttgcgaagt cgtctcaggc tggtgaagga 660 cgtcaaggac gaggcgcagg acaatgctag agctgctgcc aagataggag cagaaatgtt 720 cgcccccgtt gacgtgcaag acctctacag ctttacagag gtcaagaagg tggagaccgg 780 cctcatgagg gaggtcgtaa aggagaaaaa cggcgaagaa gagaaacacc tcgagcccat 840 catggaagag gtgaggtcta tcaaggacac cgccgaagct agggacgccg cctccacctg 900 gataacagag acagttaagc tgaagaactc aacgcttaac gcagatgaac tgtctcttgc 960 caccatcgcc cgctatgttg aaaacgtagg ggacaaattc aaactcgaca ttgcaagcaa 1020 aacatatcta aagcaagtcg catcgatgtc tgtaccaatc ccaaccaaca aagacatcaa 1080 attgaagatg gtgctgcaga gtcctgaagc acgtgccagg cgggaacgca tggacgtgct 1140 tgactctgtg ggtttttaga ggggctctgt accgcctctg gttttgagag cccatttccc 1200 gttctcgggc tgccagagat cgcggtcaca gacggagccc ggctccgtaa ggttagtagt 1260 aatattagat accttagcca aacccatcta ggtcttgtat acaaggcacc aaatgcctcc 1320 ctgcacaacg cgcttgtagc agtggagaga agagttttta cagtaggaaa gggggataaa 1380 gctatctacc ccccccgccc tgagcatgac attttcactg atacgatgga ttacttccaa 1440 aaatccatta tagaagaggt gggatactgc aagacatatc tagcgcaact cctggctaac 1500 agttatagcg caggaaagag ggccatgtat cacaaagcca ttgcatcctt gaaggctgtc 1560 ccttatcatc agaaggatgc caatgtgcaa gctttcctga agaaggaaaa acattggatg 1620 accaaggaca tcgccccccg gttgatttgc ccccgcagca agcggtacaa cattatccta 1680 ggaactcgtt tgaaattcaa cgagaagaag atcatgcacg caattgatag tgtgtttgga 1740 tcccccactg tgctttctgg ctatgacaac ttcaagcaag gaaggatcat agccaagaag 1800 tggcaaaagt ttgcatgccc cgtcgccatc ggcgtggatg ctagtcgctt tgaccaacac 1860 gtgtcagagc aggcgcttaa gtgggaacac gggatataca atgggatctt cggggacaac 1920 gaactggctc ttgcacttga acaccaaatc accaacaaca tcaagatgtt tgttgaagac 1980 aaaatgctta ggtttaaggt aagaggccac agaatgtccg gtgacattaa taccagcatg 2040 ggaaacaagc tgataatgtg cggcatgatg cacgcatatt tcaagaagct gggtgttgaa 2100 gctgagctat gtaataatgg ggatgattgt gtcatcataa ctgacagagt gaatgaagaa 2160 ctcttcagtg gaatgtatga ccatttccta caatacggct tcaacatggt gaccgagaag 2220 ccagtttacg aactggaaca actggagttt tgccagtcaa aaccggtctc tattaatgga 2280 aagtatagaa tggtcagaag gcccgatagc ataggcaaag atagcacaac actactgagc 2340 atgctcaatc aatccgacgt caagagctac atgtcggctg tggctcagtg tggtttagtg 2400 ctaaacgctg gagtacccat actcgaaagc ttctataagt gcctatatag aagctcgggg 2460 tacaagaaag tgagtgagga attcatcaaa aacgtcattt cgtatggaac agatgagaga 2520 ctacaaggta gacgtaccta ttcggaaaca cctatcacaa accacagtag aatgtcctac 2580 tgggaatcat tcggagttga ccctaagata cagcaaatcg tcgagaggta ctacgacggt 2640 cttacggtaa gtgcccaact ccagagtgtg aaggtgacga ctccacatct gcaatcaata 2700 ctgctttcca taccggaaaa ccactcacaa aacgaatatt aattaccaaa tcttagctgg 2760 gtttgggata gggttcatag ttagtatacc ctgtacatta gctctcgcgt actttattta 2820 caataaagtt tcagacacca ctagagaggt ggtgaatgaa ttcagtaggc cgtagaggac 2880 ctagacgcgc aaatcaaaat ggcccaagaa ggaggcgccg tagaacagtt cggccagtgg 2940 ttgtggtcca acccaatcga gcaggaccca gacgacgaaa tggtcgacgc aagggaagag 3000 gaggggcaaa tcctgtattt agaccaacag gcgggactga ggtattcgta ttctcagttg 3060 acaaccttaa agccaactct tccggggcaa tcaaattcgg ccccagtcta tcgcaatgcc 3120 cagcgctttc agacggaata ctcaagtcct accatcgtta caagatcaca agtatccgag 3180 ttgagtttaa gtcacacgcg tccgccacta cggccggcgc tatctttatt gaactcgaca 3240 ccgcgtgcaa gcaatcagcc ctgggtagct acattaactc attcaccatc agcaagaccg 3300 cctccaaggt cttccggtca gaggcaatta acgggaagga attccaggaa tcaacgatag 3360 accaattttg gatgctctac aaggccaatg gaaccaccac tgacacggca ggacaattca 3420 tcattacgat gagtgtcagt ttgatgacgg ccaaataggt agactcctca acaccggaac 3480 cgaaacctgc accagaacca acaccaactc cacagccaac accagctcca caacccgcac 3540 cggaaccaac tcctgcacct gtccccaaac gattctttga gtatatcggt actccaaccg 3600 gtacaatctc aactagagaa aactctgaca gtatatctgt cagtaagctc ggtggacagt 3660 cgatgcagta tatagagaat gagaaatgtg agacgaaagt cattgattcc ttttggagca 3720 ctaacaacaa cgtatctgcg caagcagcat tcgtctatcc agtgccagag ggatcataca 3780 gcgttaacat ttcgtgcgag ggttttcaat cagttgacca cattggtggt aacgaagatg 3840 gctactggat tggtttgatt gcctactcca attcatctgg tgataattgg ggtgtgggca 3900 attacaaagg gtgtagtttc aaaaatttct tggcaaccaa cacttggaga ccaggccaca 3960 aagatctcaa gttaaatgat tgccagttca cagatggaca aatagttgaa agggatgccg 4020 tgatgtcttt ccatgtagaa gcaacaggta ctgatgcctg tttctacctt atggctccca 4080 aaacaatgaa aactgacaaa tacaactatg ttgtctcgta tggagggtac accaacaagc 4140 gaatggaatt cggtaccata tctgtaacat gtgatgaatc cgatgttgag gcagaacgca 4200 taacaaggca cgctgaaacc cccatccgct ccaaacacat tcttgtgtcc gaacggtatg 4260 tggaaccaat gcccaccata atcgatcaag gcttgtgtga cgtgaaaact cccgagcaag 4320 aacaaacgtt ggtggatgaa gaagacaagc aaactgtttc cacagaacct gatatagcac 4380 tccaggaata tgaggctgca acagttgaag ttcctgatgc tgaagaggat gttttgccct 4440 ccaaggaaca gttgtcttct aaaccaatgg acacgtccgg caacaaaata ccaaaaccca 4500 aggaacctga agtacttggg acataccagg gcatgcacat ttaccctgag gacgtgccac 4560 ccctagcgcg acaaaaacta cgtgaagccg ccaaagcacc taccacgttg ctctacgaaa 4620 gaacgccaaa gaagagcagc aatatcttga ctcgttattt ggagtctaat aggtccccta 4680 ccactcccgc tgccccatca gtgtcaactg tatcaaatat gacaagggaa cagcttgcgg 4740 agtacactag aattaggaaa tcccttggac tcacagcagc aaaggaatac aaggcgcagt 4800 ttcagtgaag ataacaccac tagcacaatt cggatcctgg gaaacaggca gaactttggt 4860 tcataagctc gggtaggctg tcaacctacc gccgtatcgt tttgtgtttg gccgatggaa 4920 gatcttcacg ttatcgccgc ttgtatgctt gctttgactg tgctctcagg ggtaggcgct 4980 atcctgagct gttgcaaatg gtgcttcagc tcttcctttc cctccccccg cgcttctctt 5040 tagcaaaacc cgtttcccgg tctgtgcggg aaacaaccaa aaatatcggg gagctccggc 5100 tcagtgagag gattaacgac cctcagtaat tggctggtct tggcgggcat gaataaccct 5160 ctataagacg aagtggtaac cgccactgat caaatggtga acatgcttct gtgttgtaca 5220 ctgccccggg gccaaccggg tcaacaaggc tatcccacca actcgatgaa atgagagtgg 5280 agtgggcgga gtgggtgact tcgtgatgta cacccgatcg tcaggattga agacgttaaa 5340 actcgacgac ctggtgcaag tcgttaaact gactcgggtg gatacacccc acccggccca 5400 gcatgttggc atacccacga tacgaaacgt gggtctcttg gagccactac ctgtgatgca 5460 aggtagggta cgagtcttag caagctctgt gccaggagat ggacataaac catagcaatc 5520 caacgtgttg cagctctggg gcgaaccaca ggtgaaccgt gccacgggcc tggttaccga 5580 aaggaaagcc agtatccaac acagcaatgt gttgggggtt acacccttcg gggtactctt 5640 aacgctgaca ctcgaaagag cagttcggca accc 5674 //