ID EU332331; SV 1; linear; genomic RNA; STD; VRL; 5664 BP. XX AC EU332331; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 06JN4 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5664 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5664 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5664 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; 5c9b4af27b7071dca0515eb63db8ee2f. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC4722956; 25858272. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5664 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="06JN4" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Jinan" FT /db_xref="taxon:2169986" FT CDS join(142..1161,1161..2747) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FKZ4" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKZ4" FT /protein_id="ABY73685.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEVYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT LEGLCTASGFESPFTILGLPEIAVTDGARLRKVSSNINYLTQTHLGLVYKAPNASLHNA FT LVAIERRVFTVGKGDSAIYPPHPEYDIFLETMGYFAESVVNKVGYCKTYTPQQLALSYS FT AGKRAQYFKAIESLKKEPYQMKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT FT RLKFNEKKIMHAIDGMFGSPTVLSGYDSFTQGRIIASKWQKFASPVAIGVDASRFDQHV FT SEQALKWEHGIYNGIFGDNELALALEHQLVNNIKMFVEDKMLTFKVRGHRMSGDINTSM FT GNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITERANEHLFGGMYDHFLKYGFNMVTE FT TPVYELGELEFCQSRPVRIGGNYRMVRRPDCIGKDSNTLLSMRNESDVKSYMSAVAQCG FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFEETPITTDNR FT MSYWESFGVDPKIQQLVERYYDNLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY" FT CDS 142..1164 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKZ5" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKZ5" FT /protein_id="ABY73686.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEVYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT " FT CDS 2861..4801 FT /codon_start=1 FT /transl_except=(pos:3458..3460,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FKZ6" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FKZ6" FT /protein_id="ABY73690.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAKXVDSSTPEPKPTPAPTPAPTPEP FT KPEPTPAPPPKRFFEYVGTPIGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEASGKDACFY FT LMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMTRHSECPTRVNNIL FT IDEGYCQPLSTIIDQGLCDVQTPGQSQEVVEEDRQTVSTESDIALKEYEAAIAEIPDAE FT EDALPSREQLSSKPVDTSGEEIPKPRPPSNEVLGVYQGQPIYADDVPPGTRQKLRDAAK FT APSTLLYDKTPKRSKSILSRFVEGNRSSVESAAPSTATTSNLTREQLREYTRIRNSLGL FT TAAKEYKARLS" FT CDS 2861..3460 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FKK9" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B0FKK9" FT /protein_id="ABY73687.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAK" FT CDS 2901..3362 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKL0" FT /protein_id="ABY73688.1" FT /translation="MAHEGGAVEQFGQWLWSSPIEQDPDDEMLDAQEEEGQVLYLDQNA FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLEHTRPPL FT RRALCLLNSTPRASNQPYLATLTHSPSANPPQSPSAQRRLEGPSSRRHR" FT CDS 4930..5052 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKZ9" FT /protein_id="ABY73689.1" FT /translation="MDDLRIIALCALSSTILFTIALVSSWCASCCKFIDAACSL" XX SQ Sequence 5664 BP; 1582 A; 1381 C; 1367 G; 1334 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgca agagagtcct acagttgcct gacacgcctg tagccccctt 120 cttccccttt cacccgccat catggtgttc tttgagatgc tcatcggtgc cagcgttaag 180 gctgtcaagg acttcatcag ccactgctat tctagactca agagtatata ctactctttt 240 aaaagatggc tgcttgagat atccgggcaa tttaaggccc atgacgcctt tgtcaacatg 300 tgctttgggc acatcgctga catcgaggac ttcgaggcgg aactcgctga ggtgtacgcc 360 gagaaggagg aggagatcga ggaagcgcga agcttgctcc gcttattaac tgcccagaag 420 tccaaatctg gggtggacga ggcctggacc gacttctttt tgaagtcgag aggcggcgtt 480 tatgcgccac ttaactgcga gccaaagtcc atagagcttg atgccaaagc ggacaagttg 540 gagaagctcc ttgaggacat gcacctgttt gaggtgcgcg cggccaagac ctatatcaag 600 gagaagggcc gtggatttat caactgctgg aatgaccttc gatcaaggtt gcagttggtg 660 aagtctgtca aagacgaggc caaggacaac atcaaagcgg cctccaagat tggtgtggag 720 ttctctgctc caaccaatat tgctgatctc tacacattca ctgaggttac aaaggtagag 780 acaggtctta ccaaggagac aactagggtt gtcaacgggg aggaggagac ctccaccgta 840 cccctggttg aggacgtccg gaagatcaag gacgacgaag ttagcaggga gagtgcctcc 900 aattggatca gggaggtaat caaattgaaa aattccaccc tttctgctga cgagctttcc 960 ctggcgacca ttgccaggta tgtagaaaac ttaggggaga aatacaaact tgacattgct 1020 tccaaaacat atctcaagca atgtgcaatg atttcagtac caatcccctc ccaaaaagac 1080 ataaaaacaa agatggtgat ccagagccct gctgcccgtg cacttcgtga gcgcgtggca 1140 gttcttgact cccagggttt ttagaggggc tctgtaccgc ctccggtttt gaaagcccat 1200 ttaccattct tggcttaccg gagattgcgg tcacagacgg agcccgactc cgtaaggtta 1260 gtagtaatat taattacctt acccagaccc atctaggcct tgtatataaa gcacctaatg 1320 catccttgca taacgcgctc gtagccatcg aaaggagagt gtttacagta ggaaaggggg 1380 attctgctat ttaccccccc cacccggaat atgatatttt cttagagaca atgggctact 1440 ttgctgagtc cgttgtcaac aaggtgggat actgtaaaac atatacccct cagcaactgg 1500 ctcttagtta cagtgcaggg aagagggccc agtatttcaa agccattgag tccttgaaga 1560 aggaaccata ccaaatgaag gactcaaacg tgcaggcatt cctcaagaag gagaaacact 1620 ggatgaccaa agccatcgcc ccgcgcctaa tttgcccccg ctccaagcgg tataatatca 1680 tcctaggaac tcgtttgaaa ttcaacgaga agaagatcat gcatgctatt gacggtatgt 1740 ttggatcccc cactgtgctt tcgggctatg atagctttac ccaaggcaga atcatagcca 1800 gcaagtggca aaagtttgca tcacccgttg ctattggtgt tgatgctagc cgctttgacc 1860 aacacgtgtc tgagcaggcg cttaagtggg aacacgggat atacaatggc atttttggcg 1920 acaatgaatt ggcccttgct ctcgaacatc agcttgtaaa taatattaaa atgttcgttg 1980 aggacaagat gctaaccttt aaggttaggg gccatagaat gtcaggggac attaacacca 2040 gcatgggcaa caagctcatc atgtgcggca tgatgcacgc ttactttaag aagctgggtg 2100 ttgaagcaga actttgtaac aatggagatg attgtgtcat cataactgaa agggctaacg 2160 aacacctttt cggtggaatg tatgaccatt tcctcaaata cggcttcaac atggtgacgg 2220 aaaccccggt ttatgaactc ggggaacttg aattttgcca atctagaccc gtcagaattg 2280 gtggcaatta tagaatggtc cgcaggcccg actgcatagg aaaagatagc aacacacttt 2340 tgagcatgcg caatgaatcc gacgtcaaaa gctatatgtc ggctgtggct cagtgtggtc 2400 tcgttttgaa tgcgggtgta cccatactcg aaagcttcta ccgctgcctg tacagaagct 2460 cggggtacaa gaaagtaagt gaggaataca tcaaaaacgt catatcatat ggaacagatg 2520 aacgccttca aggtagacgt acctttgagg agacacctat caccactgac aatcgaatgt 2580 catactggga atcatttgga gttgacccta agattcaaca acttgtcgag aggtactacg 2640 acaatcttac ggtaagtgcc caactccaaa gtgtgaaggt gacatctcca catctgcaat 2700 caatcctcct ctccattccg gagaacaact cgcacaacga atattaatta ccaaatctta 2760 gccgggtttg ggatagggtt tatcactagt attccctgta cattagctct cacgtacttt 2820 atttacaata aagtttcaga caccactaga gaggtggtga atgaattcag taggccgtag 2880 aggacctaga agagcaaaca atggcacacg aaggcggcgc cgtcgagcaa ttcggccagt 2940 ggttgtggtc cagcccaatc gaacaggacc cagacgacga aatgctagac gcgcaagagg 3000 aagaaggcca ggttctgtat ttggaccaaa acgcggggct gaggtattcg tattctcagt 3060 cgacaacctt aaggccaact cctccgggat cctcaaattc ggtcccgatt tatcgcaatg 3120 cccagcggtt tcagacggag tacttaagtc ctaccacaat tacaagatct caagtatcaa 3180 cgttgagttt agaacacacg cgtccgccac tacgtcgggc gctatgttta ttgaactcga 3240 cacctcgtgc aagcaatcag ccttatctag ctacattaac tcattcacca tcagcaaatc 3300 cgcctcaaag tccttccgcg cagcggagat tggagggacc cagttccagg cgacatcggt 3360 gaatcaattc ttccttttat acaaggcaaa tggcactacg actgatattg cagggcagtt 3420 cattatcaga attgagcttc atctaatgac tgccaaatag gtagactcct caacaccgga 3480 accgaaaccc acaccagccc caacacctgc cccaacacct gagccgaaac cagagcccac 3540 acctgcacct ccccccaagc gtttctttga gtatgttggg actccgatag gggtcatatc 3600 tactcgagag aacaccgaca gcatatcggt gtccaagctc ggtggtcagt cgatgcagta 3660 cattgaaaac gagaagtgtg aaactaaaac catcgactcc ttctggagca caaacaacaa 3720 cgtttcggca caagctgcct tcgtttttcc agtgccagaa gggtcgtaca gtgtgaatat 3780 ctcgtgtgaa ggtttgcaat ccgtcgacca catcggtggc aacgaggatg gctattggat 3840 tgggctcatt gcctactcca attcatcagg cgataactgg ggtgtaggta actacaaagg 3900 gtgtgtattt acaaactttc tggcaacgaa cacctggcga ccaggacaca aggatttgaa 3960 acttaacgat tgccagttca cagatggaca aatagttgaa agggatgcag ttatgtcttt 4020 ccatgtagag gcttcaggca aagatgcctg cttctaccta atggctccca aaactatgaa 4080 aacagacaag tacaactatg ttgtctcgta tggagggtac acgaacaaaa gaatggagtt 4140 cggtaccatt tctgtgacat gtgatgaatc cgatgttgag gcactccgca tgacgaggca 4200 ctctgagtgc cctacccgcg taaataatat tttaattgat gagggatatt gtcaacctct 4260 ttccaccata atcgaccaag ggctgtgtga tgtgcaaact cccggccaaa gccaagaggt 4320 ggttgaggaa gacagacaaa ctgtttccac tgaatctgat atagcgctca aggaatacga 4380 agcggccatc gctgaaatcc ctgacgctga agaggatgct ttgccctctc gggaacaact 4440 ctcatctaaa ccagttgaca cgtcagggga ggagatcccc aaacccagac cccccagcaa 4500 tgaggttctg ggtgtttacc aaggtcagcc catttatgct gatgacgtgc cacctggtac 4560 aaggcaaaag ctacgtgatg ccgccaaagc accctctacc ctgttgtatg acaagacccc 4620 aaaacggtct aaatctattt tgtccaggtt tgtagaaggg aacaggtcct ctgtagaatc 4680 tgctgccccc tccacagcta ctacatccaa tctaaccagg gagcagctcc gggaatatac 4740 ccgcattagg aattccttag gtttaacagc tgcaaaagag tacaaggctc gtctttcgtg 4800 aagacaacac cactcgcaca aatcggatcc tgggaaacag gcagaacttc ggttcgtaag 4860 ctcgggtgac tggaaggtgg gctgtcaacc caccaccgac taaccgccgt atcgtactgt 4920 gtgtggccga tggatgatct tcgcattatc gccctctgcg ctctgtcatc aactatactg 4980 ttcaccattg cgttggtgag tagttggtgt gcaagctgtt gtaagttcat agacgcagct 5040 tgttctctgt aagctgcgac caaaaatatc ggggagcttc tgctcagtga gaggattaac 5100 gaccctcggt aatggctggt cctggcaggc ctgaataacc tgctatagga caactggaaa 5160 cccaccagtg atcaaataag gtagcttact tctgagctgt acactgtccc tgcgcaatcg 5220 gggtaaacaa ctataaccac ccaactcgat gaaatgagag tggaggtggc ggagtgggtg 5280 acttcgtgat gtacacccga gcgtcaggtt tgaagacgcc ataaaacaca acgagatgag 5340 aacctcgtta taaaagttcc tcggctgata cacccagtcg actggacctg ctggcatacc 5400 cttgatacga aacaagggct tctgagagcc actacctgtg atgcaaggta gggtaagagt 5460 cttagcaacc tctgtacttg gaagtggaca taaaccatag caatccagca gcatcccaga 5520 agagagtttt cctcactagg tgaaaacgtg ccacgggcct gtttcaagca atctagctct 5580 gcttgagaca gtatctcata gaagcaattc tatgggggga ctggattctg actgccgaca 5640 ctcgcaagag aagttcggca tccc 5664 //