ID EU332330; SV 1; linear; genomic RNA; STD; VRL; 5709 BP. XX AC EU332330; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 06JN2 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5709 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5709 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5709 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; 26394a5103f1b5d6bc1844fcd9a71c6b. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5709 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="06JN2" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Jinan" FT /db_xref="taxon:2169986" FT CDS join(142..1161,1161..2747) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FKY8" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKY8" FT /protein_id="ABY73679.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT LEGLCTASGFESPFTILGLPEIAVTDGARLRKVSSNINYLTQTHLGLVYKAPNASLHNA FT LVAIERRVFTVGKGDSAIYPPHPEYDIFSETMGYFAESIVNKVGYCKTHTPQQLALSYS FT AGKRAQYFKAIESLKKEPYQMKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT FT RLKFNEKKIMHAIDGMFGSPTVLSGYDSFTQGRIIASKWQKFASPVAIGVDASRFDQHV FT SEQALKWEHGIYNGIFGDNELALALEHQLVNNIKMFVEDKMLTFKVRGHRMSGDINTSM FT GNKLIMCGMMHAYFKKQGVEAELCNNGDDCVIITERANEYLFGGMYDHFLKYGFNMVTE FT TPVYELGELEFRQSKPVRIGGNYRMVRRPDCIGKDSNTLLSMRNESDVKSYMSAVAQCG FT LVLNAGVPILESFYRCLYRSSGYKKVSVEYIKNVISYGTDERLQGRRTFEETPITTDNR FT MSYWESFGVDPKIQQLVERYYDNLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY" FT CDS 142..1164 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKK7" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKK7" FT /protein_id="ABY73680.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT " FT CDS 2906..4846 FT /codon_start=1 FT /transl_except=(pos:3503..3505,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FKZ0" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FKZ0" FT /protein_id="ABY73684.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAKXVDSSTPEPKPTPAPTPAPTPEP FT KPEPTPAPPPKRFFEYVGTPIGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEASGKDACFY FT LMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMTRHSECPTRANNIL FT IDEGFCQPLSTITDQGLCDVQTPGQEQEVVEEDRQTVSTESDIALKEYEAATAEIPDAE FT EDALPSREQLSSKPVDTSGEEIPKPRPPSNEVLGVYQGQPIYADDVPPGTRQKLRDAAK FT APSTLLYDKTPKRSKSILSRFIEGNRSSVESAAPSTATTSNLTREQLREYTRIRNTLGL FT TAAKAYKAQFS" FT CDS 2906..3505 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FKK9" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B0FKK9" FT /protein_id="ABY73681.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAK" FT CDS 2946..3407 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKZ2" FT /protein_id="ABY73682.1" FT /translation="MAHEGGAVEQFGQWLWSSPIEQDPDDEMLDAQEEEGQVLYLDQNA FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLEHTRPPL FT RRALCLLNSTPRASNQPYLATLTHSPSVNPPQSPSAQRRLEGPNSRRHR" FT CDS 4975..5097 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKZ3" FT /protein_id="ABY73683.1" FT /translation="MDDLRVIALCALSSTILFTIALVSSWCVSCCKFIDAACSV" XX SQ Sequence 5709 BP; 1607 A; 1399 C; 1373 G; 1330 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgca acagagtcct acagttgctt gacacgcctg tagccccctt 120 cttccccttt cactcgccat catggtgttc tttgagatgc tcatcggtgc cagtgtcaag 180 gctgtcaaag atttcatcag ccactgctat tccaggctca agagtatata ttactctttt 240 aagagatggc tgcttgaaat atccgggcaa tttaaggccc atgacgcctt tgtcaacatg 300 tgctttgggc acatcgctga catcgaggac ttcgaggcgg aacttgctga ggagtacgcc 360 gagaaggagg aggagatcga ggaagcgcga agcttgctcc gcttattaac tgcccagaag 420 tccaaatctg gggtggacga ggcttggacc gacttctttt tgaagtcgag aggcggcgtt 480 tatgcgccac ttaactgcga gccaaagtcc atagagcttg atgccaaagc ggacaagttg 540 gagaagctcc ttgaggacat gcacctgttt gaggtgcgcg cggccaagac ctacatcaag 600 gagaagggcc gcggattcat caactgctgg aatgaccttc gatcaaggtt gcagttggtg 660 aagtctgtca aagacgaggc caaggacaac atcaaagcgg cctccaagat tggtgtggag 720 ttctctgctc caaccaatat tgctgatctc tacacattca ctgaggtaac aaaggtagag 780 acaggtctta ccaaggagac aactagggtt gtcaacgggg aggaggagac ctccaccgta 840 cccctggttg aggacgtccg aaagatcaag gacgatgaag ttagcaggga gagtgcctcc 900 aattggatca gggaggtaat caaattgaaa aattccaccc tttctgctga cgagctttcc 960 ctggcaacca tcgccaggta tgtagaaaat ttaggggaaa aatacaaact tgacattgct 1020 tccaaaacat atcttaagca atgtgcaatg atttctgtac caatcccctc ccaaaaagat 1080 ataaaaacaa agatggtgat ccaaagccct gctgcccgtg cactgcgtga gcgcgtggca 1140 gttcttgact cccagggttt ttagaggggc tctgtaccgc ctccggtttt gaaagcccat 1200 ttaccattct tggcttaccg gagatagcgg tcacagacgg agcccgactc cgtaaggtta 1260 gtagtaatat taattacctt acccaaaccc atctaggcct tgtatataaa gcacccaatg 1320 catccctgca caacgcgctc gtagccatcg aaaggagagt gtttacagta ggaaaggggg 1380 attctgctat ctaccccccc cacccggaat atgacatttt ctcagagaca atgggttact 1440 ttgctgagtc cattgtcaac aaggtgggat actgcaaaac acacacccct cagcaattgg 1500 ctcttagtta cagtgcaggg aagagggccc agtatttcaa agccattgag tccttgaaga 1560 aggaaccata tcaaatgaag gactcaaacg tgcaggcatt cctcaagaag gagaaacact 1620 ggatgaccaa agccatcgcc ccgcgcctaa tctgcccccg ctccaagcgg tataatatca 1680 tcctaggaac tcgtttgaaa ttcaacgaga agaagatcat gcatgccatc gacggtatgt 1740 ttggatcccc cactgtgctt tcaggctatg acagctttac ccaaggcaga atcatagcca 1800 gtaagtggca aaagtttgca tcacccgttg ccatcggtgt tgatgccagc cgctttgacc 1860 aacatgtgtc tgagcaggcg cttaagtggg aacacgggat atacaatggc atttttggcg 1920 acaatgaatt ggcccttgct ctcgaacatc agctcgtaaa taatattaag atgttcgttg 1980 aggataagat gctaaccttc aaagttaggg gccatagaat gtcaggggac attaacacca 2040 gcatgggaaa caagctcatc atgtgcggca tgatgcatgc ttactttaag aagcagggtg 2100 ttgaagcaga actttgcaac aatggagatg attgtgtcat cataactgag agggctaatg 2160 aatacctttt cggtggaatg tatgaccatt tccttaaata cggcttcaac atggtgacgg 2220 aaaccccggt ttatgaactc ggggaacttg aattccgcca atccaaaccc gtcagaattg 2280 gtggcaatta tagaatggtc cgcaggcccg actgcatagg aaaagatagt aacacacttc 2340 tgagtatgcg caacgagtcc gacgttaaaa gctatatgtc ggctgtggct cagtgtggtc 2400 tcgttttgaa tgcgggtgta cccatactcg aaagcttcta ccgctgcctg tacagaagct 2460 cggggtacaa gaaagtaagt gtggagtaca tcaaaaacgt catatcatat ggaacagatg 2520 aacgccttca aggtagacgt acctttgagg agacacccat caccactgac aatcgtatgt 2580 catattggga atcatttgga gttgacccta agattcaaca acttgtcgag aggtactacg 2640 acaatcttac ggtaagtgcc caactccaaa gtgtgaaggt gacatctcca catctgcaat 2700 caatcctcct ctccattccg gagaacaact cgcacaacga atattaatta ccaaatctta 2760 gccgggtttg ggatagggtt tatcgctagt attccctgta cattagctct cgcgtacttt 2820 atttacaata aggtttccaa caccaccaga gaggtggtga ttgacactta taataaagct 2880 tcagacacca ctagagaggt ggtgaatgaa ttcagtaggc cgtagaggac ctagaagagc 2940 aaacaatggc acacgaaggc ggcgccgtcg agcaattcgg ccagtggttg tggtccagcc 3000 caatcgaaca ggacccagac gacgaaatgc tagacgcgca agaggaagaa ggccaggttc 3060 tgtatttgga ccaaaacgcg gggctgaggt attcgtattc tcagtcgaca accttaaggc 3120 caactcctcc gggatcctca aattcggtcc cgatttatcg caatgcccag cggtttcaga 3180 cggagtactt aagtcctacc acaattacaa gatctcaagt atcaacgttg agtttagaac 3240 acacgcgtcc gccactacgt cgggcgctat gtttattgaa ctcgacacct cgtgcaagca 3300 atcagcctta tctagctaca ttaactcatt caccatcagt aaatccgcct caaagtcctt 3360 ccgcgcagcg gagattggag ggacccaatt ccaggcgaca tcggtgaatc aattctttct 3420 tttgtacaag gcaaacggca ctacaactga tattgcaggg cagttcatca tcagaattga 3480 gcttcatcta atgactgcca aataggtaga ctcctcaaca ccggaaccaa aacccacacc 3540 agctccaaca cctgccccaa cacctgagcc aaaaccagag cccacacctg cacctcctcc 3600 caagcgtttc tttgagtatg ttgggactcc gataggggtc atatctactc gagagaacac 3660 cgacagcata tcggtgtcca agctcggtgg ccagtcgatg cagtatatag aaaacgagaa 3720 gtgtgaaact aaaaccatcg attccttctg gagcacaaac aacaacgttt cggcacaagc 3780 tgccttcgtt tttccagtgc cagaagggtc gtacagtgtg aatatctcgt gtgaaggttt 3840 acaatccgtt gaccacatcg gtggcaacga ggatggctac tggatcgggc tcattgccta 3900 ctccaattca tcaggcgaca actggggtgt aggtaactat aaagggtgtg tgtttacaaa 3960 ttttctggca acgaacacct ggagaccagg acacaaggat ttgaaactta acgattgcca 4020 gttcacagat ggacaaatag ttgaaaggga tgcagttatg tctttccacg tagaggcttc 4080 tggcaaagat gcctgcttct acctgatggc tcccaaaaca atgaaaacag acaagtacaa 4140 ctatgttgtc tcgtatggag ggtacacgaa caagagaatg gagttcggta ccatttctgt 4200 gacatgtgat gaatccgatg ttgaggcact ccgcatgact cggcactctg agtgccccac 4260 ccgcgcaaat aacattttaa ttgatgaggg attttgtcag cctctttcca ccataactga 4320 ccaagggctg tgtgatgtgc aaactcccgg ccaagaacaa gaggtggttg aggaagacag 4380 acaaactgtt tccactgaat ctgatatagc gctcaaggag tatgaagcgg ccaccgctga 4440 aatccctgac gctgaagagg atgctttacc ctctcgggaa caactctcat ccaaaccagt 4500 tgacacgtca ggggaggaga tccccaaacc cagaccccca agcaatgagg ttctgggtgt 4560 ctaccaagga cagcccattt atgctgacga cgtgccacct ggtacaaggc aaaagctacg 4620 tgatgccgcc aaagcacctt ctaccctgtt gtacgacaag accccaaaac ggtccaaatc 4680 tattttgtcc aggtttatag aagggaacag gtcctctgta gaatctgctg ccccctccac 4740 agctactaca tccaatttaa caagggagca gctccgggaa tatacccgca ttaggaatac 4800 cttaggttta acagctgcaa aggcgtacaa ggctcaattc tcgtgaagac aacaccactc 4860 gcacaaatcg gatcctggga aacaggcaga acttcggttc gtaagctcgg gtgactggaa 4920 ggtgggctgt caacccacca ccgactcacc gccgtatcgt actgtgtgtg gccgatggat 4980 gatcttcgcg ttatcgccct ctgtgctctg tcatcaacta tactgtttac cattgcgttg 5040 gtgagtagtt ggtgtgtaag ctgttgcaag ttcatagacg cagcttgttc tgtgtaagct 5100 gcaaccaaaa atatcgggga gcttctgctc agtgagagga ttaacgaccc tcggtaatgg 5160 ttggtcctgg caggcctgaa taacctgcta taggacaact ggaaacccac cagtgatcaa 5220 ataaggtagc ttacttctga gctgtacact gtccctgcgc aatcggggta aacaactata 5280 accacccaac tcgatgaaac gagagtggag gtggcggagt gggtgacttc gtgatgtaca 5340 cccgagcgtt aggtttgaag acgccataaa acacaacgaa atgagaacct cgttataaaa 5400 gttcctcggc tgatacaccc agtcgactgg acctgctggc atacccttga tacggaacaa 5460 gggcttctga gagccactac ctgtgatgca aggtagggta agagtcttag caacctctgt 5520 actcggaagt ggacataaac catagcactc cagcagcatc ccagaagaga gttttcctca 5580 acaggtgaaa acgtgccacg ggcctgtttc aagcaatcta gctctgcttg agacagtatc 5640 tcatagaagc aatcctatgg ggggactgga ttctgactgc cgacactcgc aagagaagtt 5700 cggcatccc 5709 //