Dbfetch
ID EU332329; SV 1; linear; genomic RNA; STD; VRL; 5660 BP. XX AC EU332329; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 06GY5 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5660 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5660 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5660 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; 3c1ed71453e075c3a17e91c722d11a99. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5660 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="06GY5" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Guiyang" FT /db_xref="taxon:2169986" FT CDS join(140..1156,1156..2742) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FKY2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKY2" FT /protein_id="ABY73673.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FMKSRGSVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLNQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCKTYPAQLLANSYSA FT GKRAMYHKAIASLRTVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFAYPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDSELALALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK FT PVYELEHLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYNETPITNHSRM FT SYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENHSQNEY" FT CDS 140..1159 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKY3" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKY3" FT /protein_id="ABY73674.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FMKSRGSVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF" FT CDS 2856..4808 FT /codon_start=1 FT /transl_except=(pos:3456..3458,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FKY4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B0FKY4" FT /protein_id="ABY73678.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAKXVDSSTPEPKPAPEPTPTPQPT FT PAPQPAPEPTPAPVPKRFFEYIGTPIGTISTRENSDSISVSKLGGQSMQYIENEKCETK FT VIDSFWSTNNNVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS FT SGDNWGVGNYRGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGT FT DACFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAERITRHTETPIR FT SKHILVSEQYGQPLPTIIDQGLCDVQTPEQEQTLVDEEDKQTVSTEPDIALMEYEAATA FT EIPDAEEDVLPSKEQLSSKPVDTSGNKIPKSKEPEVLGTYQGQNIYPEDVPPIARQKLR FT EAAKAPSTLLYEKTSKKSNNFLTRFVEANRSPTTPAAPTVSTASNMTREQLAEYTRIRK FT SLGLTAAKEYKAQFQ" FT CDS 2856..3458 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:Q2V8U4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q2V8U4" FT /protein_id="ABY73675.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK" FT CDS 2899..3360 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKY0" FT /protein_id="ABY73676.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA FT GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL FT RPALSLLNSTPRANNQPWVATLTHSQSAGPPQRSSEPKRLMGRNSRNQR" FT CDS 4915..5040 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="GOA:B0FKY7" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKY7" FT /protein_id="ABY73677.1" FT /translation="MDDLHVIAVCIFALTVLTGLGAVIGCCAGCLLPSPSFRSSV" XX SQ Sequence 5660 BP; 1676 A; 1361 C; 1383 G; 1240 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgctagta acacactaca cactcgtttt 60 gtattcgaga agtagtcgca acaacggtcc ccttattgcc tgacaagctg agggccaccc 120 ttctatcccc accgccatca tgttcttcga aatacttata ggagctagcg ctaaggcggt 180 aaaagacttc atcagtcatt gttactctcg tttaaaatct atatattatt cttttaaacg 240 ctggctgatg gagatatctg ggcagtttaa ggcccatgac gcctttgtca acatgtgttt 300 cggacacatg gctgacatag aggacttcga ggcagagctc gctgaagagt ttgccgagag 360 ggaggatgag gtggaagagg caaggagcct cctgaaactg ctggtcgccc aaaaatctaa 420 aactggggtg accgaggctt ggaccgactt ctttatgaag tcgagaggta gcgtctatgc 480 gccactttcc tgcgagccta ccaggcagga actagaagta aagagcgaga agctcgaaaa 540 gcttctagaa gaacagcacc agttcgaggt gcgagcggcc aagaaataca tcaaggaaaa 600 gggccgtggc ttcatcaact gttggaacga cttgcgaagt cgtctcaggc tggtgaagga 660 cgtcaaggac gaggcaaagg acaacgccag agctgctgcc aagatcggag cagaaatgtt 720 cgcccccgtt gacgtgcagg acctctacag ttttacagag gtcaagaagg tggagaccgg 780 cctcatgaag gaggtcgtga aagagagaaa cggcgaagaa gagaaacacc tcgagcccat 840 catggaagag gtgagatcta tcaaggatac cgccgaagct agggacgccg cctccacttg 900 gataacagag acagttaaac tgaagaactc aacgcttaac gcagatgaat tgtctctggc 960 caccatcgcc cgctacgttg aaaacgtagg ggacaaattc aaactcgaca ttgctagtaa 1020 gacatatcta aagcaagtcg catcgatgtc tgtaccaatt ccaactaaca aggacatcaa 1080 attgaagatg gtgctgcaaa gccctgaagc acgtgccagg cgggaacgca tggacgtgct 1140 tgactctgtg ggtttttaga ggggctctgt accgcctctg gttttgagag cccatttccc 1200 attctcgggc tgccagagat tgcggtcaca gacggagccc ggctccgtaa ggttagtagt 1260 aatattagat accttaacca aacccaccta ggtcttgtat ataaggcacc aaatgcctcc 1320 ctgcacaatg cgcttgtagc agtggagaga agagttttta cagtaggaaa gggggataaa 1380 gcaatctacc ccccccgccc agagcatgac attttcactg atacgatgga ttacttccaa 1440 aaatccatta tagaagaggt gggatactgc aagacatatc cggcgcaact cctggctaac 1500 agctatagcg caggaaagag ggccatgtat cacaaagcca ttgcatcact gaggactgtc 1560 ccttatcatc agaaggatgc caatgtgcaa gctttcctga agaaggaaaa acattggatg 1620 accaaggaca tcgccccccg attgatttgc ccccgcagca agcggtacaa catcatccta 1680 ggaactcgtt tgaaattcaa cgagaagaag atcatgcacg ctatcgatag tgtgttcgga 1740 tcccccactg tgctttctgg ctatgacaac tttaaacaag gaagaatcat agccaagaag 1800 tggcaaaagt ttgcataccc cgtcgccatc ggcgtggatg ctagccgctt tgaccaacac 1860 gtgtcagagc aggcgcttaa gtgggaacac gggatataca atgggatctt cggagacagc 1920 gaactggctc ttgcacttga acaccaaatc accaacaaca ttaagatgtt tgttgaagac 1980 aaaatgctta ggttcaaggt aagaggccac agaatgtccg gtgacattaa taccagcatg 2040 ggaaataagc tcataatgtg cggcatgatg catgcatatt tcaagaagct gggtgttgaa 2100 gctgaacttt gtaacaacgg agacgactgt gtcatcatca ctgatagagc caatgagaag 2160 ctctttgatg gcatgtacga ccatttcctc cagtatggct tcaacatggt gaccgaaaaa 2220 ccagtttacg aactggagca cttggagttt tgccagtcaa aaccggtctc tattaatgga 2280 aagtatagaa tggtcagaag gcccgatagc ataggcaaag atagcacaac actactgagc 2340 atgctcaatc aatccgacgt caagagctac atgtcggctg tggctcagtg tggtctggtg 2400 ctcaacgctg gagtacccat actcgaaagc ttctataaat gcctatatag aagctcgggg 2460 tacaagaaag tgagtgagga atttattaaa aacgtcatat cgtatggaac agatgagaga 2520 ctacaaggta gacgtaccta taacgagaca cctatcacaa accacagtag aatgtcctac 2580 tgggaatcat tcggagttga ccctaagata cagcaaatcg tcgagaggta ctacgacggt 2640 cttacggtaa gtgcccaact ccagagcgtg aaggtgacga ctccacatct gcaatcaata 2700 ctgctttcca taccggaaaa ccactcacaa aacgaatatt aattaccaaa ttttagccgg 2760 gtttgggata gggttcatag ttagtatacc ctgtacatta gctctcgcgt actttattta 2820 caataaagtt tcagacacca ctagagaggt ggtgaatgaa ttcagtaggc cgtagaggac 2880 ctagacgcgc aaatcaaaat ggcacaagaa ggaggcgccg tagaacagtt cggccagtgg 2940 ttgtggtcca acccaatcga gcaggaccca gacgacgaaa tggtcgacgc aagggaagag 3000 gaggggcaaa tcctgtattt agaccaacag gcgggactga ggtattcgta ttctcagtcg 3060 acaaccttaa agccaactct tccggggcaa tcaaattcgg ccccagtcta tcgcaatgcc 3120 cagcgctttc agacggaata cttaagtcct accaccgtta caagatcaca agtatccgtg 3180 ttgagtttaa gtcacacgcg tccgcaacta cggccggcgc tatctttatt gaactcgaca 3240 ccgcgtgcaa acaatcagcc ctgggtagct acattaactc attcacaatc agcaggaccg 3300 cctcaaaggt cttcagagcc gaagcgatta atgggaagga attccaggaa tcaacgatag 3360 accagttttg gatgctctac aaggccaatg gaaccaccac tgacacggca ggacaattca 3420 ttatcacgat gagtgtcagt ttaatgacgg ccaaataggt agactcctca acaccggaac 3480 cgaaacctgc accagaaccc acaccaactc cacagccaac gccagctcca cagcccgcac 3540 ccgaaccgac tcctgcacca gtccccaaaa gattctttga gtatatcggc actccaatcg 3600 gtacaatctc aacaagagag aactctgaca gtatttctgt cagcaagctc ggtgggcagt 3660 cgatgcagta tatagagaat gagaagtgtg aaacaaaagt cattgattcc ttctggagca 3720 ctaacaacaa cgtgtctgca caagcagcct tcgtttaccc agtgccagaa ggatcataca 3780 gtgtgaacat ttcgtgcgaa ggctttcaat ccgttgacca cataggaggc aacgaggatg 3840 gttattggat tggtttaatt gcctattcca attcgtcggg tgacaattgg ggggtaggca 3900 actacagagg atgcagtttc aagaacttct tggcaaccaa tacttggaga ccaggccaca 3960 aggatctcaa gttgaatgat tgccagttca cagatggaca aatagttgaa agggacgccg 4020 tgatgtcttt ccatgtggaa gcaacaggta ctgacgcctg tttctatctt atggctccca 4080 aaacaatgaa aactgacaaa tacaactatg ttgtctcgta tggagggtat acaaacaaac 4140 ggatggaatt tggtaccata tctgtgacat gtgatgaatc cgatgttgag gcagaacgca 4200 taacaaggca cactgaaaca cctatacgtt ccaaacacat tcttgtgtct gaacagtacg 4260 ggcaaccttt acccaccata atcgaccaag gcttgtgtga tgtgcaaact cccgagcaag 4320 aacagacact ggtggatgaa gaagacaaac agactgtttc cacagaacct gatatagcac 4380 tcatggaata tgaagctgca acggctgaaa ttccggatgc tgaagaggat gttttgccct 4440 ctaaggaaca gctgtcttct aaaccggtgg acacgtccgg caacaagata cctaaatcca 4500 aggaacctga agtacttgga acataccagg gacagaacat ttaccctgaa gacgtgccac 4560 caattgcgcg gcaaaagcta cgcgaagccg caaaagcacc ctccacattg ctctacgaga 4620 aaacttctaa gaagagcaac aatttcttga ctcgttttgt ggaggcaaat aggtccccta 4680 caactccagc tgccccaaca gtgtcaactg catcaaacat gacaagggaa cagcttgcgg 4740 agtacactag aattaggaaa tcccttggac tcacagcagc gaaggaatac aaggcgcaat 4800 ttcagtgaag gtaacaccac tagcacagat cggatcctgg gaaacaggca gaactacggt 4860 tcataagctc gggtaggccg tcaacctacc gccgtatcgt actgtgtttg gccgatggat 4920 gacctccacg ttatcgccgt ttgtattttt gctctaactg tgttgacagg gttaggcgcg 4980 gtgatcggct gttgtgccgg ttgccttctc ccctctccct ccttccgctc ttctgtttaa 5040 gcaaaatctc tcggtctgtg cgagagaaac ccaaaaatat cggggagctt cggctcagtg 5100 aggggattaa cgacccccag caaaggctgg tcttggcgga cttgaataac ccgctataag 5160 acgaagtggt aaccgccact gatcaaatgg tgaacatgct tctgtgttgt acactgcccc 5220 ggagcctacc gggttaacaa ggctattcca ccagctcgat gaaatgagag tggagtggac 5280 ggagtgggtg acttcgagat gtacacccga tcgtcaggat tgaagacgtt aaaactcgac 5340 gacctagtgc aagtcgttaa actgactagg gtggatacac cacacccggc ctaacttgta 5400 ggcataccca cgatacgaaa cgtgggtctc ttggagccac tacctgtgat gcaaggtagg 5460 gtatgagtct tagcaagctc tgtgccagga gatggacaaa ccatagcaat cctgcaagtc 5520 atcttggcga accataggtg aaccgtgcca cgggcctgcc taccgcaagg aaaagcagta 5580 tccaacacag caatgtgttg ggggttacac ccttcggggt actcttaacg ctgacactcg 5640 aaagagcagt tcggcaaccc 5660 //