Dbfetch
ID EU332327; SV 1; linear; genomic RNA; STD; VRL; 5652 BP. XX AC EU332327; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 05ZZ13 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5652 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5652 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5652 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; 2ee95a0f37cb312334c32fa9d1b22178. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5652 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="05ZZ13" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Zhengzhou" FT /db_xref="taxon:2169986" FT CDS join(141..1160,1160..2746) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FKX0" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKX0" FT /protein_id="ABY73661.1" FT /translation="MLLFELLIGASVKAVKDFISHCYSRLKSIYYAFKRWLMEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEFAEKEEEIEEAQSLLRLLVAQKSKHGVTEAWTD FT FFLKSRGGVYAPLSCEPTAAELGVKSDKLERLLGEMHQFEVRAAKKYIKEKGRGFINCW FT NDLRSRLKLVKEVKDEARDNIKAASKIGAEFSAPTNIEDLYSFTEVKKVETGLMKEVIK FT VVQGEEVKEMKPITEDVRSIKDNAQDRENASNWIREVIKLKNSTLSADELSMATIARYV FT ENIGDKYQMDIASKTYLKQCAMMSVPIPTTKDIKMKMVLQSPAARALRERVAVLDSQGF FT LEGLCTSSGFESPFSILGLPEIEVTDGARLRKVSSNIKYLTQTHLGLVYKAPNASLHNA FT RVAVERRVFTVGKGDAAIYPPRPVHDIFTDTMDYFKESIINEVGYCKTYPAQALALSYS FT AGKRSQYFKAIESLKREPYQRKDANVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT FT RLKFNEKKIMHAIDSVFGSPTVLSGYDNFQQGRIIAKKWQKFASPVAIGVDASRFDQHV FT SEQALKWEHGIYNGIFGSTELATALEHQLVNNIKMFVEDKMLRFKVIGHRMSGDINTSM FT GNKLIMCGMMHAYFKMLGVEAELCNNGDDCVIITDRVNEKLFDGMYQHFLQYGFNMVTE FT APVYELEKLEFCQSRPVRIDGKYRMVRRPDCIGKDSTTLLSMLNESDVKSYMSAVAQCG FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFKETPITDDNR FT MSYWESFGVDPKIQQLVERYFDDLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY" FT CDS 141..1163 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKX1" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKX1" FT /protein_id="ABY73662.1" FT /translation="MLLFELLIGASVKAVKDFISHCYSRLKSIYYAFKRWLMEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEFAEKEEEIEEAQSLLRLLVAQKSKHGVTEAWTD FT FFLKSRGGVYAPLSCEPTAAELGVKSDKLERLLGEMHQFEVRAAKKYIKEKGRGFINCW FT NDLRSRLKLVKEVKDEARDNIKAASKIGAEFSAPTNIEDLYSFTEVKKVETGLMKEVIK FT VVQGEEVKEMKPITEDVRSIKDNAQDRENASNWIREVIKLKNSTLSADELSMATIARYV FT ENIGDKYQMDIASKTYLKQCAMMSVPIPTTKDIKMKMVLQSPAARALRERVAVLDSQGF FT " FT CDS 2860..4791 FT /codon_start=1 FT /transl_except=(pos:3457..3459,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FKX2" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FKX2" FT /protein_id="ABY73666.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQSNRAGPRRRNARRA FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGIIKFGPDLSQCPAVSDGVLKSYHNYKIS FT SVNVEFKSHASSTTSGAMFIELDTSCKQSALASYINSFTISKSASKSFKATEIGGTQFQ FT ASSVNQFFLLYKANGTTSDTAGQFIIKLEIHLMTAKXVDSSTPEPTPAPAPQPTPQPAP FT EPTPAPAPKRFFEYIGTPMGVISTRENTDSISVSQLGGQSMQYIENEKCETRTIDSFWS FT TNNNVAAQAAFVYPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGIIAYSNSSDDNWGI FT GNYRGCSFKNYLATNTWRPGHKDLKLNDCQFTGGQIVERDSIISFHVEATGTDACFYLM FT APKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAIRIAKHSATPNRANHILVS FT ERYQDVLPTIENQGLCDVETPGQETSIVEEDDKQSVSTEPEIAVKEYEAAVAEIPDAEE FT DVLPSKEQLSSRPVDTSGNTIPRTKEPEVLGTYQGQNIYPEDVPPAARQALREAARAPS FT TMLYDKAPKGAKSILSRFVEGNRSKTTPAAPSVSTTSNMTREQLKEYTRIRNSLGVTAA FT KEYKAQLQ" FT CDS 2860..3459 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FKQ1" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B0FKQ1" FT /protein_id="ABY73663.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQSNRAGPRRRNARRA FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGIIKFGPDLSQCPAVSDGVLKSYHNYKIS FT SVNVEFKSHASSTTSGAMFIELDTSCKQSALASYINSFTISKSASKSFKATEIGGTQFQ FT ASSVNQFFLLYKANGTTSDTAGQFIIKLEIHLMTAK" FT CDS 2900..3361 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKW8" FT /protein_id="ABY73664.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMLDAQEEEGQILYLDQNA FT GLRYSYSQSTTLKPIPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLSHTRPQL FT RPALCLLNSTPRASNQPWLATLTHSPSANLPQSPSKRRRLEGPNSRHPR" FT CDS 4920..5042 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKX5" FT /protein_id="ABY73665.1" FT /translation="MNDIHVIAVCVLATTVLTGFAAVVGCCFGCVRTLNALCSV" XX SQ Sequence 5652 BP; 1677 A; 1323 C; 1334 G; 1318 T; 0 other; tgaagattga ccatctcaca gaagtgtttt cgtgctggaa aaccgcaacc cgaccctttt 60 gtattgggta agttgttgca aaaaaggtca cggtactggc tgacacccta ccgtccaccc 120 ctctctccct ctcacacaaa atgcttcttt ttgaactttt gatcggcgcc agcgtcaagg 180 cggtcaagga cttcattagc cattgctact caagattgaa aagcatatat tatgctttta 240 aaagatggct tatggagata tcggggcagt tcaaggccca tgacgccttt gtcaacatgt 300 gttttggaca catcgctgac atcgaggact tcgaagctga actcgctgag gagttcgctg 360 agaaggaaga ggagatcgag gaagctcaaa gcctccttag actgcttgtc gcccaaaaat 420 caaaacatgg ggtgacagag gcttggaccg acttctttct gaagtcgaga ggtggggttt 480 acgccccact ttcctgcgag cctacagcag cagagcttgg cgtcaaaagc gacaagctcg 540 aaagactcct cggggagatg caccaatttg aggtgcgagc ggccaagaaa tacataaaag 600 aaaagggccg cggattcatc aactgctgga atgatctccg ttccaggctg aagttggtga 660 aggaggtgaa ggatgaggcg agagacaata taaaggcagc ttctaagata ggagctgaat 720 tttctgcgcc caccaacatc gaggacctct acagtttcac agaggtcaag aaagtggaga 780 ctggcctcat gaaagaggtc attaaagtcg tccagggcga ggaagtgaag gagatgaagc 840 ccatcactga agatgtgcgc tccatcaagg acaacgccca agacagagag aacgcttcca 900 attggatacg agaggttata aagctgaaaa attcgacact ctctgctgat gaactctcta 960 tggcaactat cgcccgatat gttgaaaaca tcggcgataa gtaccaaatg gacattgcat 1020 ccaagacata tctcaagcaa tgtgccatga tgtccgtacc tatcccaacc acgaaggaca 1080 tcaaaatgaa gatggtgctc caaagccccg ctgcacgcgc cctcagggaa cgcgttgcag 1140 ttcttgattc tcagggtttt tagaggggct ctgtacctcc tctggttttg aaagtccctt 1200 ttccatactt ggactaccag agattgaggt cacagacgga gcccgactcc gtaaggttag 1260 tagtaatatt aagtacctaa cccaaaccca tctcggcttg gtatacaaag cccccaatgc 1320 gtccctgcac aatgcaagag ttgcagtgga aagaagagta tttacagtag gaaaggggga 1380 tgctgcaatc tacccccccc gccctgtgca tgacattttc actgatacga tggattactt 1440 caaggaatcc attatcaatg aggtgggcta ctgtaaaaca taccctgcgc aagcacttgc 1500 cctcagctat agtgcaggga aaaggtcaca atacttcaaa gccatcgagt ccttaaagag 1560 agaaccctac caaaggaagg acgcgaatgt acaggcattc ctcaagaagg agaagcattg 1620 gatgaccaaa gccatcgccc cccgattgat ttgcccccgc tcaaagcggt ataacatcat 1680 ccttggaact cgtttgaaat tcaacgagaa gaagatcatg cacgctattg atagtgtgtt 1740 tggatccccc actgtgcttt ctggttacga caacttccag cagggaagaa tcatagccaa 1800 aaagtggcaa aagtttgcat cacctgtcgc catcggtgtt gatgctagcc gtttcgacca 1860 gcatgtgtcg gaacaggcgc ttaagtggga acacgggata tacaatggga tcttcggaag 1920 cactgagcta gcaactgctc tcgaacatca actcgtaaac aacattaaga tgttcgttga 1980 agacaaaatg ctaaggttca aagtaattgg acatagaatg tccggggata ttaacaccag 2040 catgggaaat aaattgataa tgtgcggcat gatgcacgca tattttaaaa tgctgggagt 2100 tgaagccgaa ctttgtaaca acggagacga ttgtgtcatc ataacagaca gagtcaatga 2160 gaaactcttt gatggcatgt atcagcactt tcttcagtac ggtttcaaca tggtgacgga 2220 ggctccagtg tacgaactgg aaaaacttga gttttgccaa tcaagacccg tcagaataga 2280 tggcaaatac agaatggtca gaagaccaga ttgcattggg aaggacagta ccacactttt 2340 gagcatgctt aacgaatccg acgttaaaag ctacatgtcg gctgtggctc agtgtgggct 2400 tgttttgaat gcgggtgtac ccatactcga aagcttctat cggtgtttat acagaagttc 2460 ggggtacaag aaagtaagtg aggaatatat caaaaacgtc atatcatatg gaacagatga 2520 acgccttcaa ggtagacgta ccttcaagga gacacctatc acagacgata atcgcatgtc 2580 gtattgggaa tcatttggag ttgaccctaa gatacaacaa ctcgtcgagc ggtacttcga 2640 cgatcttacg gtaagtgccc aactccaaag tgtgaaggtg acatctccac atctgcaatc 2700 aatcctcctc tccattccgg agaacaactc gcacaacgaa tattaattac caaatcttag 2760 ccggatttgg gatagggttt atcgtaagta ttccctgtac attagctctc acgtactttg 2820 tttacaataa agtttcagac accactagag aggtggtgaa tgaattcagt aggccgtaga 2880 ggacctagaa gagcaaacaa tggcacaaga aggcggcgcc gtagagcaat tcggccagtg 2940 gttgtggtcc aatccaatcg agcaggaccc agacgacgaa atgctagacg cgcaagagga 3000 agaaggccaa attctgtatt tggaccaaaa cgcggggctg aggtattcgt attctcagtc 3060 gacaacctta aagccaattc ctccgggatc atcaaattcg gtcccgattt atcgcaatgc 3120 ccagcggttt cagacggagt acttaagtcc taccacaatt acaagatctc aagtgtcaac 3180 gttgagttta agtcacacgc gtcctcaact acgtccggcg ctatgtttat tgaactcgac 3240 acctcgtgca agcaatcagc cttggctagc tacattaact cattcaccat cagcaaatct 3300 gcctcaaagt ccttcaaagc gacggagatt ggagggaccc aattccaggc atcctcggtg 3360 aatcagttct ttctactata taaagccaat ggcaccacga gtgacactgc aggacagttc 3420 atcatcaaac ttgaaataca tctgatgact gccaaatagg tagactcctc aacaccggaa 3480 cctacacctg caccagcccc acaaccaacc ccacaacccg cacctgaacc aacacctgca 3540 cctgccccca agcgcttctt tgagtacatc ggtactccta tgggcgtcat ttcaacacgt 3600 gaaaatactg acagtatatc tgttagtcag ttgggtggac aatctatgca gtatattgaa 3660 aatgagaaat gtgagaccag aaccattgat tccttttgga gcactaacaa caacgtagca 3720 gcgcaagctg ctttcgttta tccagtgcca gaagggtctt acagtgtaaa catttcttgt 3780 gagggccttc aatccgttga ccacatcggt ggcaacgaag atggatattg gattggcatt 3840 attgcctatt ccaattcatc cgatgacaat tggggaatag gaaattacag agggtgtagt 3900 tttaaaaatt atttggcaac aaacacttgg agacctggtc acaaagatct caagctcaat 3960 gattgccaat tcacaggcgg acaaatagtt gaaagggatt ccatcatatc atttcacgtg 4020 gaagctacag gcactgatgc ctgtttctat ttgatggccc caaaaacaat gaaaaccgac 4080 aaatacaact atgttgtctc gtatggagga tatacaaaca agagaatgga gtttggcacc 4140 atatcagtaa cctgtgatga atccgatgtt gaggcaatac gcattgcgaa acactccgca 4200 accccaaacc gtgctaacca tatcttggtt agcgagcgat atcaagacgt attacccact 4260 attgaaaatc aaggactgtg tgatgtggaa actcccggtc aagaaacaag tatagtggaa 4320 gaggatgaca aacaatctgt ttctaccgaa cctgaaatag ctgttaagga atacgaagct 4380 gctgttgctg agattcctga cgctgaagag gatgtgttgc cctctaagga acagctgtcg 4440 tccagacctg tggatacatc cggtaacacc ataccaagaa ccaaggaacc cgaagtactt 4500 ggcacctacc agggacaaaa catttaccct gaagatgtac caccagctgc ccgacaagcg 4560 ctacgtgaag cagccagagc cccttccacc atgttatatg acaaagcccc taagggagct 4620 aaatcaattt tatctcggtt tgtggaaggt aataggtcca aaacaacccc agctgctccc 4680 tctgtgtcaa caacttcaaa tatgacgagg gaacaactta aagagtatac tcgtattagg 4740 aatagtttag gtgtaacagc cgcaaaggag tacaaggcgc aattacagtg aagacaaaca 4800 ccactcacaa ctgccggatc ctgggaaaca ggcagaactt aggttcgtaa gctcgggtga 4860 ctggaaggtg ggctgtcaac ccatcaccaa ctcaccgtcg tatcaccgtt gtgtggccga 4920 tgaatgacat tcatgttatc gctgtttgtg tactcgctac aaccgtttta accggcttcg 4980 ccgctgttgt aggttgttgc ttcggctgtg ttcgaaccct taatgcactt tgttctgtgt 5040 aaagtgcacc caaaaatatc ggggagcttc ggctcagtga gaggattaac gaccctcaga 5100 aaaggaaggt cttggcggac ttgaataatc cgctatagga caagtggaaa cctaccaccg 5160 atcaaataag gtagcttgct tctgagctgt acacagtccc tgcgaaaccg gggtaaacaa 5220 ctataatcac ccaattcgat gaaacgagag tggaggtgac ggggtgggtg acctcgtgat 5280 gtacacccga tcgtcaggtt tgaagacgtt aaaacacgac gagatgggaa cactcgttaa 5340 aagttcctcg gctgatacac ccagtcgacc gaaacagttt ggcataccct tgatacggaa 5400 caagggtcct tgggagccac tacctgtgat gcaaggtagg gtaagagtct tagcaagctc 5460 tgtgcccggg gatggacata aaccatagca ctccaactgg atatcggacg tcggtttctc 5520 gacactaggt gaaacgtgcc actggcctgt ttcaagcaat ctagctctgc ttgaaacagt 5580 atttcatggg agcaattcta tggggggact ggattctgac tgccgacact cgcaagagaa 5640 gttcggcatc cc 5652 //