ID EU332325; SV 1; linear; genomic RNA; STD; VRL; 5652 BP. XX AC EU332325; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 05ZZ10 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5652 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5652 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5652 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; b29780d686b26a7ffdbd6fca9ad34554. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5652 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="05ZZ10" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Zhengzhou" FT /db_xref="taxon:2169986" FT CDS join(140..1156,1156..2742) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FKV8" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKV8" FT /protein_id="ABY73649.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEMRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE FT VNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKSYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSCNIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDSAIYPPHPEYDIFLETMGYFAESIVNKVGYCKTYTPQQLALSYSA FT GKRAQYFKAIESLKKEPYQMKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDGMFGSPTVLSGYDSFTQGRIIASKWQKFASPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDNELALALEHQLVNNIKMFVEDKMLTFKVKGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITERTNEHLFSGMYDHFLKYGFNMVTET FT PVYELGELEFCQSKPVRIGGNYRMVRRPDCIGKDSNTLLSMRNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFKETPITTDNRM FT SYWESFGVDPKIQQLVERYYDNLKVSAQLQSVKVTTPHLQSILLSIPENNSHNEY" FT CDS 140..1159 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKV9" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKV9" FT /protein_id="ABY73650.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEMRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE FT VNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKSYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGF" FT CDS 2856..4790 FT /codon_start=1 FT /transl_except=(pos:3453..3455,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FKW0" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FKW0" FT /protein_id="ABY73654.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAVRPVVVVQPNRTGPRRRNARRA FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAKXVDSSTPEPKPTPAPTPPPQPEP FT KPEPTPAPPPKRFFEYVGTPIGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVQASGKDACFY FT IMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMSRHSESPTRVNNIL FT IDEGYHQTLPPIQNLGLCDVQTPGQDEVEEDDKQTVSTEPDIALQEYEAATAEIPDAEE FT DVLPSKEQLSSKPVDTSGEEIPKPPPRDNEILGVYQGQPIYADDVPPIARQKLRDAAKA FT PSTMLYDKAPKSKSFLSRLVEGNRSKVETTAPSTATTSNLTREQLREYTRIRNSLGLTA FT AKEYKAQFS" FT CDS 2856..3455 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:Q5I4G5" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:Q5I4G5" FT /protein_id="ABY73651.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAVRPVVVVQPNRTGPRRRNARRA FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAK" FT CDS 2896..3357 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKS0" FT /protein_id="ABY73652.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMLDAQEEEGQILYLDQNA FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLGHTRPPL FT RRALCLLNSTPRASNQPYLATLTHSPSANQPQSPSAQRRLEGPSSRRHR" FT CDS 4920..5042 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="GOA:B0FKK5" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKK5" FT /protein_id="ABY73653.1" FT /translation="MDDLHVIALCVLSSTILAGTALVIGCCVGCCRLIDAAYSV" XX SQ Sequence 5652 BP; 1628 A; 1360 C; 1368 G; 1296 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgca agaacggtcc tctcattgcc tgactagctg agagccatcc 120 tcctatcccc accgccacca tgttctttga aatacttata ggagctagtg ccaaggcggt 180 caaagatttc atcagccact gctactctag actgaaatcc atatattatt ctttcaaacg 240 atggctgatg gaaatatctg ggcaatttaa ggcccatgac gcctttgtca acatgtgctt 300 tgggcacatg gctgacattg aagacttcga ggctgaactc gctgaagagt tcgccgagag 360 ggaggatgag gtggaagagg ccaggagcct cttgaaactg ctggtcgccc aaaaatctaa 420 atccggggtg accgaggctt ggaatgactt ctttttgaag tcgaggggtg gtgtttacgc 480 accgctctct tgtgagccaa ccaagcagga actagaagtc aagagcgaga agctcgagag 540 gcttctagac gaacagcacc aattcgagat gcgagcggcc aagaaataca tcaaagaaaa 600 gggccgcggc ttcatcaatt gctggaacga cttgcgtagc cgtctcagat tggtgaagga 660 tgtcaaggat gaggcgaagg acaacgccaa agccgctgca aagattggag cggaaatgtt 720 cgcccccgtt gacgtgcagg acctctacag ctttacagag gtcaagaagg tggagaccgg 780 cctcacaaag gaggtcgtaa aagaagtgaa cggtgaagaa acgaagcgcc tcgaacccat 840 cttggaagag gtgcgatcca tcaaggacac cgccgaagct agggacgccg cctccacttg 900 gataacagag acagtcaagt tgaaaaattc aacccttaac gctgatgaac tgtctctcgc 960 caccatcgcc cgctacgttg aaaatgtagg ggacaaattc aaactcgaca ttgccagcaa 1020 gtcatatcta aagcaatgcg caacgatgtc tgtaccaatt ccaaccacca aggacatcaa 1080 aatgaagatg gtgttgcaga gtcctgaagc acgtgccagg cgggaacgca tggacgtgct 1140 tgactctgtg ggtttttaga ggggctctgt accgcctctg gttttgagag cccatttcca 1200 attctcgggc tgccagagat tgcggtcaca gacggagccc ggctccgtaa ggttagttgc 1260 aatattagat accttagcca aacccactta ggtttagtat ataaggcacc aaatgcctcc 1320 ctgcacaacg cgcttgtggc agtggagaga agagttttta cagtaggaaa gggggattcc 1380 gctatctacc ccccccaccc tgaatatgac atttttttag aaacaatggg ctactttgct 1440 gagtccattg tcaacaaggt gggatactgc aagacataca ctcctcagca actggctctt 1500 agttacagtg cagggaagag ggcccagtat ttcaaagcca ttgagtcctt gaagaaggaa 1560 ccatatcaaa tgaaggactc aaacgtgcag gcattcctca agaaggagaa acactggatg 1620 accaaagcca tcgccccgcg cctgatttgc ccccgctcca agcggtacaa tatcatccta 1680 ggaactcgtt tgaaatttaa cgagaagaag atcatgcatg ccattgacgg tatgtttgga 1740 tcccccactg tgctttcagg ctatgatagc tttacccaag gcagaatcat agccagtaag 1800 tggcaaaagt ttgcatcacc cgttgctatc ggtgttgatg ctagccgctt tgaccaacat 1860 gtgtctgagc aggcgcttaa gtgggaacac gggatataca atggcatttt tggcgacaat 1920 gaattggccc ttgctctcga acatcagctt gtaaataata tcaagatgtt cgttgaggat 1980 aagatgctaa ccttcaaagt taagggccat agaatgtcag gggacattaa caccagcatg 2040 ggaaacaagc tcatcatgtg tggcatgatg catgcttact ttaagaagct gggtgttgaa 2100 gcggaacttt gcaacaatgg agatgattgt gtcatcataa ctgaaaggac taatgaacac 2160 cttttcagtg gaatgtatga ccatttcctt aaatacggct tcaacatggt gacggaaacc 2220 ccggtttacg aactcgggga acttgaattt tgccaatcta aacccgtcag aattggtggc 2280 aattatagaa tggtccgtag gcccgactgc ataggaaaag atagtaacac acttttgagc 2340 atgcgcaacc aatccgacgt caaaagctac atgtcggctg tggctcagtg tggtctcgtt 2400 ttgaatgcgg gtgtacccat actcgaaagc ttctaccgtt gtctgtacag aagctcgggg 2460 tacaagaaag taagtgagga atacatcaaa aacgttatat catatggaac agatgaacgc 2520 cttcaaggta gacgtacctt caaggagaca cctatcacca cagacaatcg catgtcgtat 2580 tgggaatcat ttggagttga ccctaagatc caacaacttg tcgagaggta ctacgacaat 2640 cttaaggtaa gtgcccaact ccagagtgtg aaggtgacaa ctccacatct gcaatcaatc 2700 ctcctctcca ttccggagaa caactcgcac aacgaatatt aattaccaaa tcttagccgg 2760 gtttgggata gggtttatag taagcatacc ctgtacatta gctctcacgt actttattta 2820 caataaagtt tcagacacca ctagagaggt ggtgaatgaa ttcagtaggc cgtagaggac 2880 ctagaagagc aaacaatggc acaagaaggc ggcgccgtag agcagttcgg ccagtggttg 2940 tggtccaacc caatcgaaca ggacccagac gacgaaatgc tagacgcgca agaggaagaa 3000 ggccaaattc tgtatttgga ccaaaacgcg gggctgaggt attcgtattc tcagtcgaca 3060 accttaaggc caactcctcc gggatcctca aattcggtcc cgatctatcg caatgcccag 3120 cggtttcaga cggagtactt aagtcctacc acaattacaa gatctcaagt atcaacgttg 3180 agtttaggac acacgcgtcc gccactacgt cgggcgctat gtttattgaa ctcgacacct 3240 cgtgcaagca atcagcctta tctagctaca ttaactcatt caccatcagc aaatcagcct 3300 caaagtcctt ccgcgcagcg gagattggag ggacccagtt ccaggcgaca tcggtgaatc 3360 agttctttct tttgtacaag gcaaatggca cgacgactga tattgcgggg cagttcatca 3420 taaaaattga gcttcactta atgactgcca aataggtaga ctcctcaaca ccggaaccta 3480 aacccacacc agctccaaca cccccccctc aacctgagcc caaaccagag cccacacctg 3540 cacctccccc aaaacgcttc tttgagtatg ttggcacccc gatcggagta atatcaactc 3600 gggaaaacac tgatagtata tcagtgtcga agcttggggg tcagtcaatg cagtacatag 3660 agaacgagaa gtgtgagaca aaaaccatcg actctttctg gagcacaaat aacaacgttt 3720 cggcgcaagc cgccttcgtt tttccagtgc cagaaggatc gtacagtgtg aacatctcgt 3780 gtgaaggtct tcaatccgtt gaccacattg gtggcaacga agatggctat tggattgggc 3840 tgatagccta ctccaattca tcaggtgaca attggggcgt gggcaactac aaagggtgtg 3900 tgtttacaaa tttcttggca acgaacacct ggcgaccagg tcataaggat ttaaaactta 3960 acgattgcca attcacagac ggacaaatag ttgaaaggga tgcagttatg tctttccatg 4020 tgcaagcatc aggcaaggat gcctgtttct acataatggc tcccaaaaca atgaaaactg 4080 acaaatacaa ctatgttgtc tcgtatggag ggtacacgaa caaaaggatg gagttcggta 4140 ctatctccgt tacgtgtgat gaatccgatg ttgaggcact ccgtatgtca aggcactccg 4200 agagtcccac ccgcgtaaat aacattttaa tagatgaagg ataccatcaa actttacctc 4260 ccatacaaaa tttaggactg tgtgatgtgc aaactcccgg tcaagatgag gtagaggagg 4320 atgataaaca aactgtttcc actgaacctg atatagcgct gcaggaatac gaggccgcaa 4380 cagctgagat tccagacgct gaagaggatg ttttgccctc taaggaacag ctttcatcta 4440 aacctgtgga cacatccggc gaggaaattc caaaacctcc cccgagggac aatgaaatcc 4500 ttggagttta ccaaggtcaa cctatatacg ctgacgatgt gccacccatt gccaggcaga 4560 aacttcgaga cgccgccaaa gcaccctcca ccatgctata cgacaaggca ccaaaatcca 4620 agtcgttttt atcccgttta gtggaaggga acaggtccaa ggtagaaacc actgctccat 4680 caaccgcaac gacatctaat ttgaccaggg agcagcttcg tgaatatact aggattagaa 4740 atagcttagg ccttaccgcc gcaaaggagt acaaggcaca attttcgtga agacaaacac 4800 cactcgcgca aatcggatcc tgggaaacag gctggactta ggttcgtaag ctcgggtgat 4860 tggagggtgg gctgtcaacc caccaccaac tcaccgccgt atcgtattgc gtgtggccga 4920 tggatgatct tcacgttatt gccctctgtg tcctctcctc aaccatcctg gctggtactg 4980 cgctagtgat tggttgttgc gtcggttgtt gcaggttaat agacgcggct tattctgtgt 5040 aagttgcgac caaaaatatc gaggaagctt cggcttagtg agaggattaa cgaccctcag 5100 caacggctgg tcttggcaag cctgaataac ttgctataag acaactggaa acccaccagt 5160 gatcaaataa ggtggcttgc ttctgagcta tacactgccc ccgcgcaatc ggggtaaaca 5220 actataactg cccaactcga tgaaacgaga gtggaggtgg cggagtgggt gacttcgtga 5280 tgtgcacccg aacgtcaggt ttgaagacgt tataaaacac agcgagatgg gaacctcgtt 5340 aaaagttcct cggctgatac acccagtcga ccggacctgt tggcataccc ttgatacgaa 5400 acaagggctt ctgagagcca ctgcctgtga tgcaaggtag ggtaagagtc ttagcaacct 5460 ctgtactcgg aagtggacat aaaccatagc aatccaacag catcccggaa gagagctttc 5520 ctcactaggt gaagcgtgcc acgggcctgt ctcaagcaat ctagctctgc ttgatacagt 5580 atctcataga agcaattcta tggggggact ggattctgac tgccgacact cgcaagagaa 5640 gttcggcatc cc 5652 //