ID EU332322; SV 1; linear; genomic RNA; STD; VRL; 5709 BP. XX AC EU332322; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 05ZZ6 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5709 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5709 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5709 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; d232002470dc3b3513df0996f7454108. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5709 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="05ZZ6" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Zhengzhou" FT /db_xref="taxon:2169986" FT CDS join(142..1161,1161..2747) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FKU0" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKU0" FT /protein_id="ABY73631.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTYIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT LEGLCTASGFESPFTILGLPEIAVTDGARLRKVSSNINYLTQTHLGLVYKAPNASLHNA FT LVAIERRVFTVGKGDSAIYPPHPEYDIFSETMGYFAESIVNKVGYCKTYTPQQLALSYS FT AGKRAQYFKAIESLKKEPYQLKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT FT RLKFNEKKIMHAIDGMFGSPTVLSGYDSFTQGRIIASKWQKFASPVAIGVDASRFDQHV FT SEQALKWEHGIYNGIFGDNELALALEHQLVNNIKMFVEDKMLTFKVRGHRMSGDINTSM FT GNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITERANEHLFGGMYDHFLKYGFNMVTE FT TPVYELGELEFCQSRPVRIGGNYRMVRRPDCIGKDSNTLLSMRNESDVKSYMSAVAQCG FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFEETPITTDNR FT MSYWESFGVDPKIQQLVERYYDNLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY" FT CDS 142..1164 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKN1" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKN1" FT /protein_id="ABY73632.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTYIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT " FT CDS 2906..4846 FT /codon_start=1 FT /transl_except=(pos:3503..3505,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FKU2" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FKU2" FT /protein_id="ABY73636.1" FT /translation="MNSVGRRGPRRANNGTQRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTSDIAGQFIIRIELHLMTAKXVDSSTPEPKPTPAPTPAPTPEP FT KPEPTPAPPPKRFFEYVGTPIGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEASGKDACFY FT LMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMTRHSECPTRVNNIL FT IDEGFCQPLSTTTDQGLCDVQTPGQEQEVVEEDRQTVSTGSDIALMEYEAATAEIPDAE FT EDALPSREQLSSKPVDTSGEEIPKPRPPNNEVLGVYQGQPIYAEDVPPGTRQKLRDAAK FT APSTLLYDKTPKRSKSILSRFIEGNRSSVESAAPSTATTSNLTREQLREYTRIRNTLGL FT TAAKAYKAQFS" FT CDS 2906..3505 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FKU3" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B0FKU3" FT /protein_id="ABY73633.1" FT /translation="MNSVGRRGPRRANNGTQRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTSDIAGQFIIRIELHLMTAK" FT CDS 2946..3407 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKU4" FT /protein_id="ABY73634.1" FT /translation="MAHKGGAVEQFGQWLWSSPIEQDPDDEMLDAQEEEGQVLYLDQNA FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLEHTRPPL FT RRALCLLNSTPRASNQPYLATLTHSPSANPPQSPSAQRRLEGPSSRRHR" FT CDS 4975..5097 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKN5" FT /protein_id="ABY73635.1" FT /translation="MDDLRVIALCALSSTILFTISLVSSWCVSCCKFIDAACSV" XX SQ Sequence 5709 BP; 1599 A; 1383 C; 1378 G; 1349 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgca acagagtcct acagttgcct gacacgcctg tagccccctt 120 cttccccttt cattcgccat catggtgttc tttgagatgc tcatcggtgc cagcgtaaag 180 gctgtcaaag acttcatcag ccactgctac tccagactta agagtatata ttactctttt 240 aagagatggc tgttggagat atctgggcag ttcaaggccc atgacgcctt tgtcaacatg 300 tgcttcgggc acatcgctga catcgaagac tttgaggcgg agctcgctga agagtacgcc 360 gagaaggagg aggagatcga ggaagcacga agcttgctcc gcttgctaac tgcccagaag 420 tctaaatctg gggtggacga ggcttggacc gacttctttc tgaagtcgag aggcggcgtt 480 tatgcgccac ttaactgcga gccgaagtcc atagagcttg atgccaaagc ggacaagttg 540 gaaaagctcc ttgaggacat gcaccttttc gaggtgcgcg cggccaagac ctacatcaag 600 gaaaagggcc gtggattcat caattgctgg aatgaccttc gatcaaggtt gcagttggtg 660 aagtctgtca aagacgaggc caaggacaac attaaagcgg cctccaagat tggtgtggag 720 ttttctgccc ccacctatat tgctgatctc tacacattca ctgaggttac aaaagtagag 780 acaggtctta ccaaggagac gactagggtt gtcaacggag aagaggagac ttccaccgta 840 cccctggttg aagacgtccg gaaaatcaag gacgatgaag tcagtaggga gagtgcctcc 900 aattggatca gggaggtgat caaattgaaa aactccacac tttccgctga cgagctttcc 960 ctggcaacca tcgccaggta tgtagaaaat ttaggggaaa aatacaaact cgacattgcc 1020 tcaaaaacat atcttaagca atgtgcgatg atttctgtgc caatcccctc ccaaaaagac 1080 ataaaaacaa agatggtgat ccaaagccct gctgcccgtg cacttcgtga gcgcgtggca 1140 gttcttgatt cccagggttt ttagaggggc tctgtaccgc ctccggtttt gaaagcccat 1200 ttaccattct tggcttaccg gagatagcgg tcacagacgg agcccgactc cgtaaggtta 1260 gtagtaatat taattacctt acccagaccc atctaggcct agtatataaa gcacccaatg 1320 catccctgca caacgcgctc gtagccatcg aaaggagagt gtttacagta ggaaaggggg 1380 attctgctat ctaccccccc cacccggaat atgatatttt ctcagagacg atgggctact 1440 ttgctgagtc cattgtcaac aaggtgggat actgcaagac atacacccct cagcaactgg 1500 ctcttagtta tagtgcaggg aagagggccc agtatttcaa agccattgag tccttgaaga 1560 aggaacctta tcaattgaag gactcaaacg tgcaggcatt cctcaagaag gagaaacact 1620 ggatgaccaa agccatcgcc ccgcgtctga tttgcccccg ctctaagcgg tacaacataa 1680 tcctaggaac tcgtttgaaa ttcaacgaga agaagatcat gcatgccatt gacggtatgt 1740 ttggatcccc cactgtgctt tcaggctatg atagctttac tcaaggcaga atcatagcca 1800 gtaagtggca aaagtttgca tcacccgttg ctataggtgt tgatgctagc cgctttgacc 1860 aacacgtgtc tgagcaggcg cttaagtggg aacacgggat atacaatggc atttttggcg 1920 acaatgaatt ggcccttgct ctcgaacatc agcttgtaaa taatattaag atgttcgttg 1980 aggacaagat gttaactttc aaagttaggg gccatagaat gtcaggggac attaacacca 2040 gcatgggtaa caagctcatc atgtgtggca tgatgcacgc ttattttaaa aagctgggtg 2100 ttgaagcaga actttgtaac aatggagatg attgtgtcat cataactgaa agggctaacg 2160 aacacctttt cggtggaatg tatgaccatt tcctcaaata tggcttcaac atggtgacgg 2220 aaaccccggt ttatgaactt ggggagcttg aattttgcca atctagaccc gtcagaattg 2280 gtggcaatta tagaatggtc cgtaggcccg actgcatagg gaaagatagc aacacacttt 2340 tgagcatgcg caatgaatcc gacgtcaaaa gctacatgtc ggctgtggct cagtgtggtc 2400 tcgttttgaa tgcgggtgta cccatactcg aaagcttcta ccgctgcctg tacagaagct 2460 cggggtacaa gaaagtaagt gaggaatata tcaaaaacgt catatcatat ggaacagatg 2520 aacgccttca aggtagacgt acctttgagg agacacctat caccactgac aatcgaatgt 2580 catattggga atcatttgga gttgacccta agattcaaca acttgtcgag aggtactacg 2640 acaatcttac ggtaagtgcc caactccaga gtgtgaaggt gacatctcca catctgcaat 2700 caatcctcct ctccattccg gagaacaact cgcacaacga atattaatta ccaaatctta 2760 gccgggtttg ggatagggtt tatcgctagt attccctgta cattagctct cgcgtacttc 2820 atttacaata aagtttccag caccaccagg gaggtggtga ttgatactta caataaagct 2880 tcagacacca ctagagaggt ggtgaatgaa ttcagtaggc cgtagaggac ctagaagagc 2940 aaacaatggc acacaaaggc ggcgccgtcg agcaattcgg ccagtggttg tggtccagcc 3000 caatcgaaca ggacccagac gacgaaatgc tagacgcgca agaggaagaa ggccaggttc 3060 tgtatttgga ccaaaacgcg gggctgaggt attcgtattc tcagtcgaca accttaaggc 3120 caactcctcc gggatcctca aattcggtcc cgatttatcg caatgcccag cggtttcaga 3180 cggagtactt aagtcctacc acaattacaa gatctcaagt atcaacgttg agtttagaac 3240 acacgcgtcc gccactacgt cgggcgctat gtttattgaa ctcgacacct cgtgcaagca 3300 atcagcctta tctagctaca ttaactcatt caccatcagc aaatccgcct caaagtcctt 3360 ccgcgcagcg gagattggag ggacccagtt ccaggcgaca tcggtgaatc aattctttct 3420 tttgtataag gcaaatggca ctacatctga tattgcaggg cagttcatca tcagaattga 3480 gcttcatcta atgactgcca aataggtaga ctcctcaaca ccggaaccaa aacccacacc 3540 agctccaaca cctgccccaa cacctgagcc aaaaccagag cccacacctg cacctcctcc 3600 caagcgtttc tttgagtatg ttgggactcc gataggggtc atatctactc gagagaacac 3660 cgacagtata tcggtgtcca agctcggtgg ccagtcgatg cagtatatag aaaacgagaa 3720 gtgtgaaact aaaaccatcg attccttttg gagcacaaac aacaacgttt cggcgcaagc 3780 tgccttcgtt tttccagtgc cagaagggtc gtatagtgtg aatatctcgt gtgaaggttt 3840 acaatccgtt gaccacatcg gtggcaacga ggatggctac tggattggac tcattgccta 3900 ctccaattca tcaggcgaca actggggtgt aggtaactat aaagggtgtg tgtttacaaa 3960 ttttctggca acgaacacct ggagaccagg acacaaggat ttgaaactta acgattgcca 4020 gttcacagat ggacaaatag ttgaaaggga tgcagtcatg tctttccacg tagaggcttc 4080 tggcaaagat gcctgcttct acctgatggc tcccaaaaca atgaaaacag acaagtacaa 4140 ctatgttgtc tcgtatggag ggtacacgaa caagagaatg gagttcggta ccatttctgt 4200 gacatgtgat gaatccgatg ttgaggcact ccgcatgact cggcactctg agtgccccac 4260 ccgcgtaaat aacattttaa ttgatgaggg attttgtcag cctctttcta ccacaactga 4320 ccaagggctg tgtgatgtgc aaactcccgg ccaagaacaa gaggtggttg aggaagacag 4380 acaaactgtt tccactggat ctgatatagc gctcatggag tatgaagcgg ccaccgctga 4440 aatccctgac gctgaagagg atgctttacc ctctcgggaa cagctctcat ccaaaccagt 4500 tgacacgtcg ggggaggaga tccccaaacc cagaccccct aacaatgagg ttctgggtgt 4560 ttaccaagga cagcccattt atgctgaaga cgtgccacct ggtacaaggc aaaagctacg 4620 tgatgccgcc aaagcacctt ctaccctgtt gtacgacaag accccaaaac ggtccaaatc 4680 tattttgtcc aggtttatag aagggaacag gtcctctgta gaatctgctg ccccctccac 4740 agctactaca tccaatttaa caagggagca gctccgggaa tatacccgca ttaggaatac 4800 cctaggttta acagctgcaa aggcgtacaa ggcccaattc tcgtgaagac aacaccactc 4860 gcacaaatcg gatcctggga aacaggcaga acttcggttc gtaagctcgg gtgactggaa 4920 ggtgggctgt caacccacca ccgactcacc gccgtatcgt actgtgtgtg gccgatggat 4980 gatcttcgcg ttatcgccct ctgtgctctg tcatcaacta tactgtttac catttcgttg 5040 gtgagtagtt ggtgtgtaag ctgttgtaag ttcatagacg cagcttgttc tgtgtaagct 5100 gcaaccaaaa atatcgggga gcttctgctc agtgagagga ttaacgaccc tcggtaatgg 5160 ctggtcctgg caggcctgaa taacctgcta taggacaact ggaaacccac cagtgatcaa 5220 ataaggtagc ttacttctga gctgtacact gtccctgcgc aatcggggta aacaactata 5280 accacccaac tcgatgaaac gagagtggag gtggcggagt gggtgacttc gtgatgtaca 5340 cccgagcgtc aggtttgaag acgccataaa acacaacgag atgagaacct cgttataaaa 5400 gttcctcggc tgatacaccc agtcgactgg acctgctggc atacccttga tacggaacaa 5460 gggcttctga gagccactac ctgtgatgca aggtagggta agagtcttag caacccctgt 5520 actcggaagt ggacataaac catagcactc cagcagcatc ccagaagaga gttttcctca 5580 acaggtgaaa acgtgccacg ggcctgtttc aagcaatcta gctctgcttg agacagtatc 5640 tcatagaagc aattctatgg ggggactgga ttctgactgc cgacactcgc aagagaagtt 5700 cggcatccc 5709 //