ID EU332319; SV 1; linear; genomic RNA; STD; VRL; 5657 BP. XX AC EU332319; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 05YL10 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5657 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5657 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5657 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; 5e2d23d27bf6df99817200dc91f9e4b8. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5657 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="05YL10" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Yangling" FT /db_xref="taxon:2169986" FT CDS join(142..1161,1161..2747) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FKS2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKS2" FT /protein_id="ABY73613.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVGEAWTD FT FFLKSRGGVYAPLDCEPKAIELEVKADKLEKLLEDMRLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTNIVDLYAFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDVASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT LEGLCTASGFESPFTILGLPEIAVTDGARLRKVSSNINYLTQTHLGLVYKAPNASLHNA FT LVAIERRVFTVGKGDSAIYPPHPEYDIFSETMGYFSESIVHKVGYCKTYTPQQLALSYS FT AGKRAQYFKAIESLKKEPYQIKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT FT RLKFNEKKIMHAIDSMFGSPTVLSGYDSFTQGEIIARKWQKFASPVAIGVDASRFDQHV FT SEQALKWEHGIYNGIFGDTELALALEHQLVNNIKMFVEDKMLTFKVRGHRMSGDINTSM FT GNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITERVNQHLFSGMYDHFLEYGFNMVTE FT TPVYELGELEFCQSKPVRIGGSYRMVRRPDCIGKDSNTLLSMRNESDVKSYMSAVAQCG FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFEETPITTDNR FT MSYWESFGVDPNIQQLVERYYDNLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY" FT CDS 142..1164 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKS3" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKS3" FT /protein_id="ABY73614.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVGEAWTD FT FFLKSRGGVYAPLDCEPKAIELEVKADKLEKLLEDMRLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTNIVDLYAFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDVASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT " FT CDS 2861..4795 FT /codon_start=1 FT /transl_except=(pos:3458..3460,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FKS4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FKS4" FT /protein_id="ABY73618.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAKXVDSSTPEPKPTPAPTPPPQPEP FT KPEPTPAPPPKRFFEYVGTPIGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVQASGKDACFY FT IMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMSRHSESPTRVNNIL FT IDEGYHQTLPPIQNLGLCDVQTPGQDEVEEDDKQTVSTEPDIALQEYEAATAEIPDAEE FT DVLPSKEQLSSKPVDTSGEEIPKPPPRDNEILGVYQGQPIYADDVPPIARQKLRDAAKA FT PSTMLYDKAPKSKSFLSRFVEGNRSKLETTAPSTATTSNLTREQLREYTRIRNSLGLTA FT AKEYKAQFS" FT CDS 2861..3460 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FKM1" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B0FKM1" FT /protein_id="ABY73615.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAK" FT CDS 2901..3362 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKQ8" FT /protein_id="ABY73616.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMLDAQEEEGQILYLDQNA FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLGHTRPPL FT RRALCLLSSTPRASNQPYLATLTHSPSANQPQSPSAQRRLEGPSSRRHR" FT CDS 4925..5047 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="GOA:B0FKK5" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKK5" FT /protein_id="ABY73617.1" FT /translation="MDDLHVIALCVLSSTILAGTALVIGCCVGCCRLIDAAYSV" XX SQ Sequence 5657 BP; 1592 A; 1368 C; 1365 G; 1332 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgca acagagtcct acagttgcct gacaagcctg tagccccctt 120 cttccccttt cactcgccat catggtgttc tttgagatgc tcatcggtgc cagcgtaaag 180 gctgtcaaag acttcatcag ccactgctat tccagactta agagtatata ttactctttc 240 aagagatggc tgcttgagat atccgggcaa ttcaaggccc atgacgcctt tgtcaacatg 300 tgcttcgggc acatcgccga cattgaggac ttcgaggcgg agctcgctga ggagtacgcc 360 gagaaggagg aggagatcga ggaagcgcga agcttgctcc gcttattaac tgcccagaag 420 tctaaatctg gggtgggcga ggcttggacc gacttctttt tgaagtcgag aggcggcgtt 480 tatgcgccac ttgactgcga gccaaaggcc atagagcttg aagttaaagc ggacaagttg 540 gagaagctcc ttgaggacat gcgcctgttc gaggtgcgcg cggccaagac ctacatcaag 600 gagaagggcc gtggattcat caactgctgg aatgaccttc gatcaaggtt gcagttggtg 660 aagtctgtca aagacgaggc caaggacaac atcaaagcgg cctccaagat tggtgtggag 720 ttctctgctc cgaccaatat tgttgatctc tacgcattta ctgaagttac gaaggtagag 780 acaggtctta ctaaggagac gactagggtt gtcaacggtg aggaggagac ctccaccgta 840 ccccttgttg aggacgtccg gaagattaag gacgacgaag ttagcaggga gagtgcctct 900 aattggatca gagaggtaat caaattgaaa aactccaccc tttctgctga cgagctttcc 960 ctggcaacca tcgccaggta cgtagaaaat ctaggggaga aatataaact tgacgttgct 1020 tccaaaacct atcttaagca atgtgcaatg atttctgtgc caatcccctc ccaaaaagac 1080 ataaaaacaa agatggtgat ccagagccct gctgcccgtg cacttcgtga gcgcgtggca 1140 gtccttgatt cccagggttt ttagaggggc tctgtaccgc ctccggtttt gaaagcccat 1200 ttaccattct tggcttaccg gagattgcgg tcacagacgg agcccggtta cgtaaggtta 1260 gtagtaatat caattacctt acccaaaccc acctaggtct agtgtataaa gctcctaatg 1320 catccctgca caacgcgctc gtagctatcg aaaggagggt gtttacagta ggaaaggggg 1380 attctgctat ttaccccccc cacccggaat atgatatttt ctccgaaaca atgggctact 1440 tctctgagtc cattgttcac aaggtgggat actgcaaaac atacactcca cagcaattgg 1500 ctcttagtta cagtgcaggg aaaagggccc agtatttcaa agccattgag tccttgaaga 1560 aggaacccta tcaaattaag gactcaaatg ttcaggcatt cctcaagaag gagaaacact 1620 ggatgaccaa agccatcgcc ccgcgcctga tttgcccccg ctccaagcgg tacaatatca 1680 tccttggaac tcgtttgaag ttcaacgaga agaagatcat gcatgccatt gatagcatgt 1740 ttggatcccc cactgtgctt tcaggctatg atagtttcac ccaaggtgaa atcatagcca 1800 gaaagtggca aaagtttgca tcccccgttg ctatcggtgt tgatgctagc cgctttgacc 1860 aacacgtgtc tgagcaggcg cttaagtggg aacacgggat atacaatggc atttttggcg 1920 atactgaatt ggccctcgcc ctcgaacatc aacttgtgaa caacatcaaa atgttcgttg 1980 aggataagat gctaactttt aaagttagag ggcacaggat gtcaggggac ataaacacca 2040 gcatggggaa caagctcatc atgtgtggca tgatgcacgc ttattttaag aagctgggtg 2100 ttgaagctga actgtgtaac aatggagatg attgtgtcat cataactgag agggtaaacc 2160 aacacctttt cagtggaatg tatgaccatt tcctcgaata cggcttcaac atggtgacgg 2220 agaccccggt ttacgaactc ggggagcttg aattttgcca atccaaaccc gtcagaattg 2280 gtggcagcta tcggatggtc cgcaggcccg attgcatagg gaaagatagc aacacacttt 2340 tgagcatgcg taatgaatcc gacgttaaaa gttacatgtc ggctgtggct cagtgtggtc 2400 tcgttttgaa tgcgggtgta cccatactcg aaagcttcta ccgctgtctg tacagaagct 2460 cggggtacaa gaaagtaagt gaggaataca tcaaaaacgt tatatcatat ggaacagatg 2520 aacgccttca aggtagacgt acctttgagg agacacctat caccactgac aatcgtatgt 2580 catattggga atcatttgga gttgacccta atattcaaca acttgtcgag aggtactacg 2640 acaatcttac ggtaagtgcc caactccaaa gtgtgaaggt gacatctcca catctgcaat 2700 caatcctcct ctccattccg gagaacaact cgcacaacga atattaatta ccaaatctta 2760 gccgggtttg ggatagggtt tattactagt attccctgta cattagctct cacgtacttt 2820 atttacaata aagtttcaga caccactaga gaggtggtga atgaattcag taggccgtag 2880 aggacctaga agagcaaaca atggcacaag aaggcggcgc cgtagagcaa ttcggccagt 2940 ggttgtggtc caacccaatc gaacaggacc cagacgacga aatgctagac gcgcaagagg 3000 aagaaggcca aattctgtat ttggaccaaa acgcggggct gaggtattcg tattctcagt 3060 cgacaacctt aaggccaact cctccgggat cctcaaattc ggtcccgatc tatcgcaatg 3120 cccagcggtt tcagacggag tacttaagtc ctaccacaat tacaagatct caagtatcaa 3180 cgttgagttt aggacacacg cgtccgccac tacgtcgggc gctatgttta ttgagctcga 3240 cacctcgtgc aagcaatcag ccttatctag ctacattaac tcattcacca tcagcaaatc 3300 agcctcaaag tccttccgcg cagcggagat tggagggacc cagttccagg cgacatcggt 3360 gaatcagttc tttcttttgt acaaggcaaa tggcacgacg actgatattg cggggcagtt 3420 catcataaaa attgagcttc acttaatgac tgccaaatag gtagactcct caacaccgga 3480 acctaaaccc acaccagctc caacaccccc ccctcaacct gagcccaaac cagaacccac 3540 acctgcacct cccccaaaac gcttctttga gtatgttggc accccgatcg gagtaatatc 3600 aactcgggaa aacactgata gcatatcagt gtcgaagcta gggggtcagt cgatgcagta 3660 catagagaac gagaagtgtg agacaaaaac catcgactct ttctggagca caaataacaa 3720 cgtttcggcg caagccgcct tcgtttttcc agtgccagaa ggatcgtaca gtgtgaacat 3780 ctcgtgtgaa ggtcttcaat ccgttgacca cattggtggc aatgaagatg gctattggat 3840 tgggctgata gcctactcca attcatcagg tgacaattgg ggcgtgggca actacaaagg 3900 gtgtgtgttt acaaatttct tggcaacgaa tacctggcga ccaggtcaca aggatttaaa 3960 acttaacgat tgccaattca cagacggaca gatagttgaa agggatgcag ttatgtcttt 4020 ccacgtgcaa gcatcaggca aggacgcctg tttctacata atggctccca aaacaatgaa 4080 aactgacaaa tacaactatg ttgtctcgta tggaggatac acgaacaaaa ggatggagtt 4140 cggtactatc tccgttacgt gtgatgaatc cgatgttgag gcactccgta tgtctaggca 4200 ctccgagagt cccacccgcg taaataacat tttaatagat gaaggatacc atcaaacctt 4260 acctcccata caaaatttag gactgtgtga tgtgcaaact cccggtcaag atgaggtaga 4320 ggaggatgat aaacaaactg tttccactga acctgatata gcgttgcagg aatacgaggc 4380 cgcaacagct gagattccag acgctgaaga ggatgttttg ccctctaagg aacagctttc 4440 atctaaacct gtggacacat ccggcgagga aattccaaaa cctcccccga gggacaatga 4500 aatccttgga gtctaccaag gtcaacctat atacgctgat gatgtgccac ccattgccag 4560 gcagaaactt cgagacgccg ccaaagcacc ctccaccatg ctatacgaca aggcaccaaa 4620 atccaagtcg tttttatccc gttttgtgga agggaacagg tccaagttag aaaccactgc 4680 tccatcaacc gcaacgacat ctaatttgac cagggagcag cttcgtgagt atactagaat 4740 tagaaatagc ttaggcctta ccgccgcaaa ggagtacaag gcacaattct cgtgaagaca 4800 aacaccactc gcgcaaatcg gatcctggga aacaggctga acttaggttc gtaagctcgg 4860 gtgactggag ggtgggctgt caacccacca ccaactcacc gccgtatcgt attgcgtgtg 4920 gccgatggat gatcttcacg ttattgccct ctgtgtcctc tcctcaacca tcctggctgg 4980 tacagcgcta gtgattggtt gttgcgtcgg ttgttgcagg ttaatagacg cggcttattc 5040 tgtgtaagtt gcgaccaaaa atatcgagga agcttcggct tagtgagagg attaacgacc 5100 ctcagcaacg gctggtcttg gcaagcctga ataacttgct ataaggcaac tggaaaccca 5160 ccagtgatca aataaggtag cttgcttctg agctatacac tgcccccgcg caatcggggt 5220 aagcaactat aactgcccaa ctcgatgaaa cgagagtgga ggtggcggag tgggtgactt 5280 cgtgatgtgc acccgaacgt caggtttgaa gacgttataa aacacagcga gatgggaacc 5340 tcgttaaaag ttcctcggct gatacaccca gtcgaccgga cctgttggca tacccttgat 5400 acgaaacaag ggcttctaag agccactacc tgtgatgcaa ggtagggtaa gagtcttagc 5460 aacctctgta cttggaagtg gacataaacc atagcaatcc aacagcatcc cggaagagag 5520 ttttcctcac taggtgaaac gtgccacggg cctgtctcaa gcaatctagc tctgcttgac 5580 acagtatctc atagaagcaa ttctatgggg ggactggatt ctgactgccg acactcgcaa 5640 gagaagttcg gcatccc 5657 //