ID EU332317; SV 1; linear; genomic RNA; STD; VRL; 5658 BP. XX AC EU332317; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 05YL5 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5658 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5658 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5658 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; da450937ee5b935e189ff501dc0d4924. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5658 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="05YL5" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Yangling" FT /db_xref="taxon:2169986" FT CDS join(142..1161,1161..2747) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FKR0" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKR0" FT /protein_id="ABY73601.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKHKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT LEGLCTASGFESPFTILGLPEIAVTDGARLRKASSNINYLTQTHLGLVYKAPNASLHNA FT LVAIERRVFTVGKGDSAIYPPRPVHDIFTDTMDYFKESIINEVGYCKKYPAQALALSYS FT AGKRSQYFKAIESLKREPYQKKDANVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT FT RLKFNEKKIMHAIDSVFGSPTVLSGYDNFQQGRIIAKKWQKFASPVAIGVDASRFDQHV FT SEQALKWEHGIYNGIFGDTELAIALEHQLVNNIKMFVEDKMLRFKVIGHRMSGDINTSM FT GNKLIMCGMMHAYFKMLGVEAELCNNGDDCVIITDRANEKLFDGMYQHFLQYGFNMVTE FT APVYELEKLEFCQSRPVRIDGKYRMVRRPDCIGKDSTTLLSMLNESDVKSYMSAVAQCG FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFEETPITTDNR FT MSYWESFGVDPKIQQLVERYYDNLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY" FT CDS 142..1164 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKR1" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKR1" FT /protein_id="ABY73602.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKHKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT " FT CDS 2861..4795 FT /codon_start=1 FT /transl_except=(pos:3458..3460,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FKR2" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FKR2" FT /protein_id="ABY73606.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFKATEIGGTQFQ FT ASSVNQFFLLYKANGTTSDTAGQFIIKLEIHLMTAKXVDSSTPEPTPAPAPQPAPQPAP FT EPTPAPVPKRFFEYIGTPMGVISTRENTDSISVSQLGGQSMQYIENEKCETRTIDSFWS FT TNNNVAAQAAFVYPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGIIAYSNSSDDNWGI FT GNYRGCSFKNYLATNTWRPGHKDLKLNDCQFTGGQIVERDSIISFHVEATGADACFYLM FT APKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRTTRHSECPTRVNNILID FT EGYCQPLSTITDQGLCDVQTPGQDQEVVEEDRQTVSTESDTALKEYEVATAEIPDAEED FT ALPSREQLSSRPVDTSGEEIPKPRPPSNEVLGVYQGQPIYAEDVPPGTRQKLRDAAKAP FT STLLYDKTPKRSKSILSRFIEGNRSSVESAAPSTATTSNLTREQLREYTRIRNTLGLTA FT AKEYKARLL" FT CDS 2861..3460 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FKR3" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B0FKR3" FT /protein_id="ABY73603.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFKATEIGGTQFQ FT ASSVNQFFLLYKANGTTSDTAGQFIIKLEIHLMTAK" FT CDS 2901..3362 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKR4" FT /protein_id="ABY73604.1" FT /translation="MAHEGGAVEQFGQWLWSSPIEQDPDDEMLDAQEEEGQVLYLDQNA FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLEHTRPPL FT RRALCLLNSTPRASNQPYLATLTHSPSANLPQSPSKRRRLEGPNSRHLR" FT CDS 4924..5046 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKL1" FT /protein_id="ABY73605.1" FT /translation="MDDLRIIALCALSSTILFTIALVSSWCASCCKFIDAACSV" XX SQ Sequence 5658 BP; 1625 A; 1366 C; 1337 G; 1330 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgca acagagtcct acagttgcct gacacgcctg tagccccctt 120 cttccccttt cattcgccat catggtgttc tttgagatgc tcatcggtgc cagcgtaaag 180 gctgtcaaag acttcatcag ccactgctac tcccgactca agagtatata ttactctttt 240 aagagatggc tgttggagat atctgggcag ttcaaggccc atgacgcctt tgtcaacatg 300 tgcttcgggc acatcgctga catcgaagac tttgaggcgg agctcgctga agagtacgcc 360 gagaaggagg aggagatcga ggaagcgcga agcttgctcc gcttgctaac tgcccagaag 420 tctaaatctg gggtggacga ggcttggacc gacttctttc tgaagtcgag aggcggcgtt 480 tatgcgccac ttaactgcga gccgaagtcc atagaacttg atgccaaagc ggacaagttg 540 gaaaagctcc ttgaggacat gcaccttttt gaggtgcgcg cggccaagac ctacatcaag 600 gaaaagggcc gtggattcat caattgctgg aatgaccttc gatcaaggtt gcagttggtg 660 aagtctgtca aagacgaggc caaggacaac attaaagcgg cctccaagat tggtgtggag 720 ttttctgccc ccaccaatat tgctgatctc tacacattca ctgaggttac aaaagtagag 780 acaggtctta ccaaggagac gactagggtt gtcaacggtg aagaggagac ttccaccgta 840 cccctggttg aagacgtccg gaaaattaag gacgatgaag tcagtaggga gagtgcctcc 900 aattggatta gggaggtaat caaattgaaa aactccacac tttccgctga cgagctttcc 960 ctggcaacca tcgccaggta tgtagaaaat ttaggggaaa aacacaaact cgacattgcc 1020 tcaaaaacat atcttaagca atgtgcgatg atctctgtgc caatcccctc ccaaaaagac 1080 ataaaaacaa agatggtgat ccaaagccct gctgcccgcg cacttcgtga gcgcgtggcg 1140 gttcttgatt ctcagggttt ttagaggggc tctgtaccgc ctccggtttt gaaagcccat 1200 ttaccattct tggcttaccg gagattgcgg tcacagacgg ggcccggtta cgtaaggcca 1260 gtagtaatat taattacctc acccagaccc atctcggcct tgtatataaa gcacccaatg 1320 catccttgca caacgcgctc gtagccatcg aaaggagagt gtttacagta ggaaaggggg 1380 attctgcgat ctaccccccc cgccctgtgc atgacatttt cactgataca atggattatt 1440 ttaaggaatc catcatcaat gaggtaggct actgtaaaaa ataccctgcg caagcacttg 1500 ccctcagtta tagtgcagga aaaaggtcac aatacttcaa agccatcgag tccttaaaga 1560 gagaacccta tcaaaagaag gacgcgaatg tgcaggcatt cctcaagaag gagaagcatt 1620 ggatgaccaa ggccatcgcc ccacgattga tttgcccccg ctcaaagcgg tacaatatca 1680 tccttggaac tcgtttgaaa ttcaacgaga agaagatcat gcacgctatt gatagtgtgt 1740 ttggatcccc cactgtgctt tctggttatg acaacttcca acagggaaga atcatagcca 1800 aaaagtggca aaagtttgca tcacctgtcg ccatcggtgt tgatgctagc cgtttcgacc 1860 aacacgtgtc ggaacaggcg cttaagtggg aacacgggat atacaatggg atcttcggag 1920 acactgaatt agcaatcgcc ctcgaacatc aactcgtaaa caatatcaag atgttcgtgg 1980 aagacaaaat gctaaggttt aaagtgattg gacatagaat gtccggggat attaacacca 2040 gcatgggaaa taaattgata atgtgcggca tgatgcacgc atattttaaa atgctggggg 2100 ttgaagccga actttgtaat aacggagatg attgtgttat cataacagac agagccaatg 2160 agaaactctt tgatggcatg tatcagcatt ttctccagta cggtttcaac atggtgacgg 2220 aggctccagt gtatgaactg gaaaaacttg agttttgcca atcaagaccc gtcagaatag 2280 atggcaaata cagaatggtc agaaggccag attgcattgg gaaggacagt accacacttt 2340 tgagcatgct taatgaatcc gacgtcaaaa gctacatgtc ggctgtggct cagtgtgggc 2400 ttgtcttgaa tgcgggtgta cccatactcg aaagcttcta ccgctgccta tacagaagct 2460 cggggtacaa gaaagtaagt gaggaataca tcaaaaatgt catatcatat ggaacagatg 2520 aacgccttca aggtagacgt acctttgagg agacacctat caccactgac aatcgaatgt 2580 catattggga atcatttgga gttgacccta agattcaaca acttgtcgag aggtactacg 2640 acaatcttac ggtaagtgcc caactccaaa gtgtgaaggt gacatctcca catctgcaat 2700 caatcctcct ctccattccg gagaacaact cgcacaacga atattaatta ccaaatctta 2760 gccgggtttg ggatagggtt tatcactagt attccctgta cattagctct cacgtacttt 2820 atttacaata aagtttcaga caccactagg gaggtggtga atgaattcag taggccgtag 2880 aggacctaga agagcaaata atggcacacg aaggcggcgc cgtcgagcaa ttcggccagt 2940 ggttgtggtc cagcccaatc gaacaggacc cagacgacga aatgctagac gcgcaagagg 3000 aagaaggcca ggttctgtat ttggaccaaa acgcggggct gaggtattcg tattctcagt 3060 cgacaacctt aaggccaact cctccgggat cctcaaattc ggtcccgatt tatcgcaatg 3120 cccagcggtt tcagacggag tacttaagtc ctaccacaat tacaagatct caagtatcaa 3180 cgttgagttt agaacacacg cgtccgccac tacgtcgggc gctatgttta ttgaactcga 3240 cacctcgtgc aagcaatcag ccttatctag ctacattaac tcattcacca tcagcaaatc 3300 tgcctcaaag tccttcaaag cgacggagat tggagggacc caattccagg catcttcggt 3360 gaatcagttc tttctactat acaaagccaa tggtaccacg agtgacaccg caggacagtt 3420 catcatcaaa cttgaaatac atctgatgac tgccaaatag gtagactcct caacaccgga 3480 acctacacct gcaccagccc cacaaccggc cccacagcct gcacctgaac caacacctgc 3540 acctgtccct aagcgctttt tcgagtacat tggtactcct atgggcgtca tttcaacacg 3600 tgaaaatact gacagcatat ctgttagtca attaggcgga caatccatgc agtacattga 3660 aaatgagaaa tgtgagacca gaaccattga ttccttttgg agcaccaaca ataacgtagc 3720 agcgcaagct gctttcgttt atccagtgcc agaagggtct tacagtgtaa acatttcttg 3780 tgagggcctt caatccgttg accacatcgg tggcaacgag gacggatatt ggattggcat 3840 cattgcctat tccaattcat ccgatgacaa ttggggaata ggaaattaca gagggtgtag 3900 ttttaaaaat tatttggcaa caaacacttg gagacctggt cacaaggatc tcaagctcaa 3960 tgattgccaa ttcacaggtg gacaaatagt tgaaagggat tccatcatat catttcacgt 4020 ggaagccaca ggcgctgatg cctgttttta cctgatggcc ccaaaaacaa tgaaaactga 4080 caaatacaac tatgttgtct catatggtgg atacacaaac aagagaatgg agtttggcac 4140 catatctgta acctgtgatg aatccgatgt tgaggcactc cgcacgaccc ggcactctga 4200 gtgccccacc cgcgtaaata acatattaat tgatgaggga tattgtcaac ctctttccac 4260 cataaccgac caagggctgt gtgatgtgca aactcccggc caagaccaag aggtggttga 4320 ggaagacaga caaactgttt ccactgaatc tgatacagcg ctcaaggaat acgaagtggc 4380 caccgctgaa attcctgacg ctgaagagga tgctttgccc tctcgggaac aactctcatc 4440 cagaccagtt gacacgtccg gggaggagat ccccaaaccc agacccccaa gcaatgaggt 4500 tctgggtgtt taccaaggac agcccatcta tgctgaagac gtgccacccg gtacaaggca 4560 aaagctacgt gatgccgcca aagcaccttc taccctgttg tacgacaaga ccccaaaacg 4620 gtccaaatct attttgtcca ggttcataga agggaatagg tcctctgtag aatctgctgc 4680 cccctctacc gctactacat ccaatctaac aagggagcag cttcgggaat atacccgcat 4740 taggaatacc ctaggtttaa cagctgcaaa agagtacaag gctcgtctct tgtgaagaca 4800 acaccactcg cacaaatcgg atcctgggaa acaggcagaa cttcggttcg taagctcggg 4860 tgactggaag gtgggctgtc aacccaccac cgactcaccg ccgtatcgta ttgtgtgtgg 4920 ccgatggatg atcttcgcat tatcgccctc tgtgctctgt catcaactat actgtttacc 4980 attgcgttgg tgagtagttg gtgtgcaagc tgttgtaagt tcatagacgc agcttgttct 5040 gtgtaagctg cgaccaaaaa tatcggagag cttttgctca gtgagaggat taacgaccct 5100 cggtaatggc tggtcctggc aggcctgaat aacctgctat aggacaactg gaaacccacc 5160 agtgatcaaa taaggtagct tacttctgag ctgtacactg tccctgcgca atcggggtaa 5220 acaactataa ctacccaact cgatgaaatg agagtggagg tggcggagtg ggtgacttcg 5280 tgatgtacac ccgagcgtca ggtttgaaga cgccataaaa cacaacgaga tgagaacctc 5340 gttataaaag ttcctcggct gatacaccca gtcgactgga cctgctggca tacccttgat 5400 acgaaacaag ggcttctgag agccactacc tgtgatgcaa ggtagggtaa gagtcttagc 5460 aacctctgta cttggaagtg gacataaacc atagcaatcc agcagcatcc cagaagagag 5520 ctttcctcac taggtgaaaa cgtgccacgg gcctgtttca agcaatctag ctctgcttga 5580 gacagtatct catagaagca attctatggg gggactggat tctgactgcc gacactcgca 5640 agagaagttc ggcatccc 5658 //