ID EU332316; SV 1; linear; genomic RNA; STD; VRL; 5654 BP. XX AC EU332316; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 05WN6 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5654 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5654 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5654 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; fd3cbc1b6c5de894faf5b9ba1f1f5499. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5654 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="05WN6" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Weinan" FT /db_xref="taxon:2169986" FT CDS join(140..1156,1156..2742) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FKQ4" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKQ4" FT /protein_id="ABY73595.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE FT VNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFGSPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDSAIYPPHPEYDIFSETMGYFSESIVHKVGYCKTYTPQQLALSYSA FT GKRAQYFKAIESLKKEPYQIKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSMFGSPTVLSGYDSFTQGEIIARKWQKFASPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDTELALALEHQLVNNIKMFVEDKMLTFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITERVNQHLFSGMYDHFLKYGFNMVTET FT PVYELGELEFCQSKPVRIGGSYRMVRRPDCIGKDSNTLLSMRNESDVKSYMSAVAQCGL FT VLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFKETPITTDNRM FT SYWESFGVDPKIQQLVERYYDNLKVSAQLQSVKVTTPHLQSILLSIPENNSHNEY" FT CDS 140..1159 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKQ5" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKQ5" FT /protein_id="ABY73596.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE FT VNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGF" FT CDS 2856..4790 FT /codon_start=1 FT /transl_except=(pos:3453..3455,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FKQ6" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FKQ6" FT /protein_id="ABY73600.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAVRPVVVVQPNRTGPRRRNARRA FT RGRRPNSVFGPKRGAEVFIFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAKXVDSSTPEPKPTPAPTPPPQPEP FT KPEPTPAPPPKRFFEYVGTPIGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVQASGKDACFY FT IMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMSRHSESPTRVNNIL FT IDEGYHQTLSPIQNLGLCDVQTPGQDEVEEDDKQTVSTESDIALQEYEAATAEIPDAEE FT DVLPSKEQLSSKPVDTSGEEIPKPPPRDNEILGVYQGQPIYADDVPPIARQKLRDAAKA FT PSTMLYDKAPKSKSFLSRFVEGNRSKVENTAPSTATTSNLTREQLREYTRIRNSLGLTA FT AREYKAQFS" FT CDS 2856..3455 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FKQ7" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B0FKQ7" FT /protein_id="ABY73597.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAVRPVVVVQPNRTGPRRRNARRA FT RGRRPNSVFGPKRGAEVFIFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAK" FT CDS 2896..3357 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKQ8" FT /protein_id="ABY73598.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMLDAQEEEGQILYLDQNA FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLGHTRPPL FT RRALCLLSSTPRASNQPYLATLTHSPSANQPQSPSAQRRLEGPSSRRHR" FT CDS 4921..5043 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKM9" FT /protein_id="ABY73599.1" FT /translation="MDDLHVIALCVLSSTILAGTALAIGCCVGCCRLIDAAYSV" XX SQ Sequence 5654 BP; 1623 A; 1363 C; 1373 G; 1295 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgca agaacggtcc tctcattgcc tgactagctg agagccatcc 120 ttctatcccc accgccacca tgttctttga aatacttata ggagctagtg ccaaggcggt 180 caaagatttc atcagccact gctactctag actgaaatct atatattatt ctttcaaacg 240 atggctgatg gaaatatctg ggcaatttaa ggcccatgac gcctttgtca acatgtgctt 300 tgggcacatg gctgacattg aagacttcga ggctgaactc gctgaagagt tcgccgagag 360 ggaggatgag gtggaagagg ccaggagcct cttgaaactg ctggtcgccc aaaaatctaa 420 atccggggtg accgaggctt ggaacgactt ctttttgaag tcgaggggtg gagtttacgc 480 accgctctct tgtgagccca ccaagcagga actggaagtc aagagcgaga agctcgagag 540 gcttctagac gaacagcacc aattcgaggt gcgagcggcc aagaaataca tcaaagaaaa 600 gggccgcggc ttcatcaact gctggaacga cttgcgtagc cgtctcagat tggtgaagga 660 tgtcaaggat gaggcgaagg acaacgccaa agccgctgca aagattggag cggaaatgtt 720 cgcccccgtt gacgtgcagg acctctacag ctttacagag gtcaagaagg tggagaccgg 780 cctcacaaag gaggtcgtaa aagaagtgaa cggtgaagaa acaaaacgcc tcgaacccat 840 cttggaagag gtgcgatcca tcaaggacac cgccgaagct agggacgccg cctccacttg 900 gataacagag acagtcaaat tgaaaaattc aacccttaac gctgatgaac tgtctctcgc 960 caccatcgcc cgctacgttg aaaacgtagg ggacaaattc aaactcgaca ttgccagcaa 1020 gacatatcta aagcaatgcg caacgatgtc tgtaccaatt ccaaccacca aggacatcaa 1080 aatgaagatg gtgttgcaga gtcctgaagc acgtgccagg cgggaacgca tggacgtgct 1140 tgactctgtg ggtttttaga ggggctctgt accgcctctg gttttgggag cccatttcca 1200 attctcgggc tgccagagat tgcggtcaca gacggagccc ggctccgtaa ggttagtagc 1260 aatattagat accttagcca aacccactta ggtttagtat ataaggcacc aaatgcctcc 1320 ctgcacaacg cgcttgtggc agtggagaga agagttttta cagtaggaaa gggggattct 1380 gccatttacc ccccccaccc ggaatatgac attttctccg aaacaatggg ctacttttct 1440 gagtccattg ttcacaaggt gggatactgc aagacataca ctccacagca attggctctt 1500 agttacagtg cagggaaaag ggcccagtat ttcaaagcca ttgagtcctt gaagaaggaa 1560 ccctatcaaa ttaaggactc aaatgttcag gcattcctca agaaggagaa acactggatg 1620 accaaagcca tcgccccgcg cctgatttgc ccccgctcca agcggtacaa tatcatcctt 1680 ggaactcgtt tgaagttcaa cgagaagaag atcatgcatg ccattgatag catgtttgga 1740 tcccccactg tgctttcagg ctatgatagt ttcacccaag gtgaaatcat agccagaaag 1800 tggcaaaagt ttgcatcccc cgttgctatc ggtgttgatg ctagccgctt tgaccaacac 1860 gtgtctgagc aggcgcttaa gtgggaacac gggatataca atggcatttt tggcgacact 1920 gaattggccc tcgctctcga acatcaactt gtgaataaca tcaaaatgtt cgttgaggat 1980 aagatgctaa cttttaaggt tagagggcac aggatgtcag gggacataaa taccagcatg 2040 gggaacaagc tcatcatgtg tggcatgatg cacgcttatt ttaagaagct gggtgttgaa 2100 gcagaactgt gtaataatgg agatgattgt gtcatcataa ctgagagggt aaaccaacac 2160 cttttcagtg gaatgtatga ccatttcctc aaatacggct tcaacatggt gacggagacc 2220 ccggtttacg aacttgggga gcttgaattt tgtcaatcca aacccgtcag aattggtggc 2280 agttatcgga tggtccgcag gcccgattgc atagggaaag atagcaacac acttttgagc 2340 atgcgtaatg aatccgacgt caaaagttac atgtcggctg tggctcagtg tggtctcgtt 2400 ttgaatgcgg gtgtacccat actcgaaagc ttctaccgtt gtctgtatag aagctcgggg 2460 tacaagaaag taagtgagga atacatcaaa aacgttatat catatggaac agatgagcgc 2520 cttcaaggta gacgtacctt caaggagaca cctatcacca ccgacaatcg catgtcgtat 2580 tgggaatcat ttggagttga ccctaagatc caacaacttg tcgagaggta ctacgacaat 2640 cttaaggtaa gtgcccaact ccaaagtgtg aaggtgacaa ctccacatct gcaatcaatc 2700 ctcctctcca ttccggagaa caactcgcac aacgaatatt aattaccaaa tcttagccgg 2760 gtttgggata gggtttatag taagtatacc ctgtacatta gctctcacgt actttattta 2820 caataaagtt tcagacacca ctagagaggt ggtgaatgaa ttcagtaggc cgtagaggac 2880 ctagaagagc aaacaatggc acaagaaggc ggcgccgtag agcagttcgg ccagtggttg 2940 tggtccaacc caatcgaaca ggacccagac gacgaaatgc tagacgcgca agaggaagaa 3000 ggccaaattc tgtatttgga ccaaaacgcg gggctgaggt attcatattc tcagtcgaca 3060 accttaaggc caactcctcc gggatcctca aattcggtcc cgatctatcg caatgcccag 3120 cggtttcaga cggagtactt aagtcctacc acaattacaa gatctcaagt atcaacgttg 3180 agtttaggac acacgcgtcc gccactacgt cgggcgctat gtttattgag ctcgacacct 3240 cgtgcaagca atcagcctta tctagctaca ttaactcatt caccatcagc aaatcagcct 3300 caaagtcctt ccgcgcagcg gagattggag ggacccagtt ccaggcgaca tcggtgaatc 3360 agttctttct tttgtacaag gcaaatggca cgacgactga tattgcgggg cagttcatca 3420 taaaaattga gcttcactta atgactgcca aataggtaga ctcctcaaca ccggaaccta 3480 aacccacacc agctccaaca cccccccctc aacctgagcc caaaccagag cccacacctg 3540 cacctccccc aaaacgcttc tttgagtatg ttggcacccc gatcggagta atatcaactc 3600 gggaaaacac tgacagcata tcagtgtcga agcttggggg tcagtcaatg caatacatag 3660 agaacgagaa atgtgagaca aaaaccatcg actctttctg gagcacaaat aacaacgttt 3720 cggcgcaagc cgccttcgtt tttccagtgc cagaaggatc gtacagtgtg aacatctcgt 3780 gtgaaggtct tcaatccgtt gaccacattg gtggcaacga agatggctat tggattgggc 3840 tgatagccta ctccaattca tcaggtgaca attggggcgt gggtaactac aaagggtgtg 3900 tgtttacaaa tttcttggca acgaatacct ggcgaccagg tcacaaggat ttaaaactta 3960 acgattgcca attcacagac ggacaaatag ttgaaaggga tgcagttatg tctttccacg 4020 tgcaagcatc aggcaaggac gcctgtttct acataatggc tcccaaaaca atgaaaactg 4080 acaaatacaa ctatgttgtc tcgtatggag ggtacacgaa caaaaggatg gagttcggta 4140 ctatctccgt tacgtgtgat gaatccgatg ttgaggcact ccgtatgtct aggcactccg 4200 agagtcccac ccgcgtaaat aacattttga tagatgaagg ataccatcaa actttatctc 4260 ccatacaaaa tttaggactg tgtgatgtgc aaactcccgg tcaagatgag gtagaggagg 4320 atgataaaca aactgtttcc actgaatctg atatagcgct gcaggaatac gaggccgcaa 4380 ccgctgagat tccagacgct gaagaggatg ttttgccctc taaggaacag ctttcatcta 4440 aacctgtgga cacatccggc gaggaaattc caaaaccccc accgagggac aatgaaatcc 4500 ttggagtcta ccaaggtcaa cctatatacg ctgatgatgt gccacccatt gccaggcaga 4560 aacttcgaga cgccgccaaa gcaccctcca ccatgctata cgacaaggca ccaaaatcca 4620 agtcgttttt atcccggttt gtggaaggga acaggtccaa ggtagaaaac actgctccat 4680 caaccgcaac gacatctaat ttgaccaggg agcagcttcg tgaatatact agaattagaa 4740 atagcttagg ccttaccgcc gcaagggagt acaaggcaca attttcgtga agacaaacac 4800 cactcgcgca aatcggatcc tgggaaacag gctgaactta ggttcgtaag ctcgggtgat 4860 tgggagggtg ggctgtcaac ccaccaccaa ctcaccgccg tatcgtattg cgtgtggccg 4920 atggatgatc ttcacgttat tgccctctgt gtcctctcct caaccatcct ggctggtaca 4980 gctctagcga ttggttgttg cgtcggttgt tgcaggttaa tagacgcggc ttattctgtg 5040 taagttgcga ccaaaaatat cgaggaagct tcggcttggt gagaggatta acgaccctca 5100 gcaacggctg gtcttggcaa gcctgaataa cttgctataa gacaactgga aacccaccag 5160 tgatcaaata aggtagcttg cttctgagct atacactgcc cccgcgcaat cggggtaaac 5220 aactataact gcccagctcg atgaaacgag agtggaggtg gcggagtggg tgacttcgtg 5280 atgtgcaccc gaacgtcagg tttgaagacg ttataaaaca cagcgagatg ggaacctcgt 5340 taaaagttcc tcggctgata cacccagtcg accggacctg ttggcatacc cttgatacga 5400 aacaagggct tctgagagcc actacctgtg atgcaaggta gggtaagagt cttagcaacc 5460 tctgtactcg gaagtggaca taaaccatag caatccaaca gcatcccgga agagagtttt 5520 cctcactagg tgaaaacgtg ccacgggcct gtctcaagca atctagctct gcttgacaca 5580 gtatctcata gaagcaattc tatgggggga ctggattctg actgccgaca ctcgcaagag 5640 aagttcggca tccc 5654 //