ID EU332315; SV 1; linear; genomic RNA; STD; VRL; 5652 BP. XX AC EU332315; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 05WN1 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5652 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5652 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5652 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; 303b4078e3b8920321a18228a05b477c. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5652 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="05WN1" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Weinan" FT /db_xref="taxon:2169986" FT CDS join(141..1160,1160..2746) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FKP8" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKP8" FT /protein_id="ABY73589.1" FT /translation="MLLFELLIGASVKAVKDFISHCYSRLKSIYYAFKRWLMEISGQFK FT AHDAFVNVCFGHIADIEDFEAELAEEFAEKEEEIEEAQSLLRLLVAQKSKHGVTEAWTD FT FFLKSRGGVYAPLSCEPTAAELAVKSDKLERLLEEMHQLEVQAAKKYIKEKGRGFINCW FT NDLRSRLKLVKEVKDEAKDNIKAASKIGAEFSAPTNIEDLYSFTEVKKVETGLMKEVIK FT VVQGEEVKEMKPVTEDVRSIKDNAQDRENASSWIREVIKLKNSTLSADELSMATIARYV FT ENIGDKYQMDIASKTYLKQCAMMSVPIPTTKDIKMKMVLQSPAARALRERVAVLDSQGF FT LEGLCTSSGFESPFSILGLPEIEVTDGARLRKVSSNIKYLTQTHLGLVYKAPNASLHNA FT RVAVERRVFTVGKGDAAIYPPRPVHDIFTDTMDYFKESIITEVGYCKTYPAQALALSYS FT AGKRSQYFKAIESLKREPYQRKDANVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT FT RLKFNEKKIMHAIDSVFGSPTVLSGYDNFQQGRIIAKKWQKFASPVAIGVDASRFDQHV FT SEQALKWERGIYNGIFGSTELASALEHQLVNNIKMFVEDKMLRFKVIGHRMSGDINTSM FT GNKLIMCGMMHAYFKMLGVEAELCNNGDDCVIITDRANEKLFDGMYQHFLQYGFNMVTE FT APVYELEKLEFCQSRPVRIDGKYRMVRRPDCIGKDSTTLLSMLNESDVKSYMSAVAQCG FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFKETPITNDNR FT MSYWESFGVDPKIQQLVERYFDDLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY" FT CDS 141..1163 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKP9" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKP9" FT /protein_id="ABY73590.1" FT /translation="MLLFELLIGASVKAVKDFISHCYSRLKSIYYAFKRWLMEISGQFK FT AHDAFVNVCFGHIADIEDFEAELAEEFAEKEEEIEEAQSLLRLLVAQKSKHGVTEAWTD FT FFLKSRGGVYAPLSCEPTAAELAVKSDKLERLLEEMHQLEVQAAKKYIKEKGRGFINCW FT NDLRSRLKLVKEVKDEAKDNIKAASKIGAEFSAPTNIEDLYSFTEVKKVETGLMKEVIK FT VVQGEEVKEMKPVTEDVRSIKDNAQDRENASSWIREVIKLKNSTLSADELSMATIARYV FT ENIGDKYQMDIASKTYLKQCAMMSVPIPTTKDIKMKMVLQSPAARALRERVAVLDSQGF FT " FT CDS 2860..4791 FT /codon_start=1 FT /transl_except=(pos:3457..3459,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FKQ0" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FKQ0" FT /protein_id="ABY73594.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQSNRAGPRRRNARRA FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGIIKFGPDLSQCPAVSDGVLKSYHNYKIS FT SVNVEFKSHASSTTSGAMFIELDTSCKQSALASYINSFTISKSASKSFKATEIGGTQFQ FT ASSVNQFFLLYKANGTTSDTAGQFIIKLEIHLMTAKXVDSSTPEPTPAPAPQPAPQPAP FT EPTPAPVPKRFFEYIGTPMGVISTRENTDSISVSQLGGQSMQYIENEKCETRTIDSFWS FT TNNNVAAQAAFVYPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGIIAYSNSSDDNWGI FT GNYRGCSFKNYLATNTWRPGHKDLKLNDCQFTGGQIVERDSIISFHVEATGADACFYLM FT APKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAIRIAKHSATPNRANHLLVS FT EQYQDALPTIENQGLCDVETPGQQTNVVEEDDKQSVSTEPEIAVKEYEAAVAEIPDAEE FT DVLPSKEQLSSKPVDTSGNTIPRTKEPEILGTYQGQNIYPEDVPPVARQALREAAKAPS FT TMLYDRAPKGAKSILSRFVEGNRSKAAPVAPSVSTTSNMTREQLKEYTRIRNSLGVTAA FT KEYKAQFL" FT CDS 2860..3459 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FKQ1" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B0FKQ1" FT /protein_id="ABY73591.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQSNRAGPRRRNARRA FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGIIKFGPDLSQCPAVSDGVLKSYHNYKIS FT SVNVEFKSHASSTTSGAMFIELDTSCKQSALASYINSFTISKSASKSFKATEIGGTQFQ FT ASSVNQFFLLYKANGTTSDTAGQFIIKLEIHLMTAK" FT CDS 2900..3361 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKQ2" FT /protein_id="ABY73592.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMLDAQEEEGQILYLDQNA FT GLRYSYSQSTTLKPIPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLSHTRPPL FT RPALCLLNSTPRANNQPWLATLTHSPSANLPQSPSKRRRLEGPNSRHLR" FT CDS 4920..5042 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKQ3" FT /protein_id="ABY73593.1" FT /translation="MNDIHVIAVCVLATTVLTGLAAAVGCCFGCVRTLNALCSV" XX SQ Sequence 5652 BP; 1665 A; 1319 C; 1338 G; 1330 T; 0 other; tgaagattga ccatctcaca gaagtgtttt cgtgctggaa aaccgcaacc cgaccctttt 60 gtattgggta agttgttgca aaaaaggtca cggtactggc tgacacccta ccgtccaccc 120 ctctctccct ctcacacaaa atgcttcttt ttgaactttt gatcggcgcc agcgtcaagg 180 cggtcaagga cttcattagc cattgctact caagattgaa aagcatatat tatgctttta 240 aaagatggct tatggagata tcggggcagt tcaaggccca tgacgccttt gtcaacgtgt 300 gttttggaca catcgctgac atcgaggact tcgaagctga actcgctgag gagttcgctg 360 agaaggaaga ggagatcgag gaggctcaaa gcctccttag actgcttgtc gcccaaaaat 420 caaaacatgg ggtgacagag gcttggaccg acttcttttt gaagtcgaga ggtggggttt 480 atgccccact ttcctgcgag cctacagcag cagagcttgc cgtcaaaagc gacaagctcg 540 aaagactcct cgaggagatg caccaacttg aggtgcaagc ggccaagaaa tacataaaag 600 aaaagggccg tggattcatc aactgctgga atgatctccg ttctaggctg aagttggtga 660 aggaggtgaa agatgaggcg aaagacaaca tcaaggcggc ttctaaaata ggagctgagt 720 tttctgcgcc cactaacatc gaggacctct acagtttcac agaggtcaag aaagtggaaa 780 ctggcctcat gaaagaggtt atcaaggtcg ttcagggcga ggaggtgaaa gagatgaagc 840 ccgtcactga agatgtgcgc tccattaaag acaacgccca agacagggag aacgcctctt 900 cgtggatacg ggaggttata aaattgaaaa attcaacact ctctgctgac gaactttcca 960 tggcaaccat cgcccgctat gttgaaaaca tcggcgataa gtatcaaatg gacattgcat 1020 ccaagactta tcttaagcaa tgtgccatga tgtccgtacc tatcccaacc acgaaggaca 1080 tcaaaatgaa gatggtgctc caaagccctg ctgcacgcgc ccttagggaa cgcgttgcag 1140 ttcttgattc tcagggtttt tagaggggct ctgtacctcc tctggttttg aaagtccctt 1200 ttccatactt ggactgccag agattgaggt cacagacgga gcccgactcc gtaaggttag 1260 tagtaatatt aagtacctaa cccaaaccca tctcggcttg gtatacaaag cccccaatgc 1320 gtccctgcac aatgcaagag ttgcagtgga aagaagagta tttacagtag gaaaggggga 1380 tgccgcgatc tacccccccc gccctgtgca tgacattttc actgatacga tggattactt 1440 taaggaatcc attatcactg aggtgggcta ctgtaaaaca taccctgcgc aagcacttgc 1500 cctcagctat agcgcaggga aaaggtcaca gtacttcaaa gccatcgagt ccttaaagag 1560 agaaccctac caaaggaagg acgcgaatgt acaggcattc ctcaaaaaag agaagcattg 1620 gatgaccaaa gccatcgccc cccgattgat ttgcccccgc tcaaagcggt ataacatcat 1680 ccttggaact cgtttgaaat tcaacgagaa gaagatcatg cacgctattg atagtgtgtt 1740 tggatccccc actgtgcttt ctggttatga caacttccaa cagggaagaa tcatagccaa 1800 aaagtggcaa aagtttgcat cacctgtcgc aattggcgtc gatgctagcc gcttcgacca 1860 acacgtgtcg gagcaggcgc ttaagtggga acgcgggata tacaatggaa tcttcggaag 1920 cactgaacta gcatctgccc tcgaacacca actcgtaaac aacattaaga tgttcgtgga 1980 agacaagatg ttaaggttta aagtgattgg acatagaatg tccggggata ttaacaccag 2040 catgggaaat aaattgataa tgtgtggcat gatgcacgca tatttcaaaa tgctgggggt 2100 tgaagccgaa ctttgtaata acggagatga ttgtgtcatc ataacagaca gagccaatga 2160 gaaactcttt gatggcatgt atcagcattt tctccagtac ggtttcaaca tggtgacgga 2220 ggctccagtg tatgaactgg aaaaacttga gttttgccaa tcaagacccg tcagaataga 2280 tggtaaatat agaatggtca gaaggccaga ttgcattggg aaggacagca ccacactttt 2340 gagcatgctt aatgaatccg acgtcaaaag ttacatgtcg gctgtggctc agtgtgggct 2400 cgttttaaat gcgggtgtac ccatactcga aagcttctac cgttgtttat acagaagttc 2460 ggggtacaag aaagtaagtg aggaatacat caaaaacgtc atatcatatg gaacagatga 2520 acgccttcaa ggtagacgta ccttcaagga gacacctatc acaaacgata atcgcatgtc 2580 gtattgggaa tcatttggag ttgaccctaa gatacaacaa ctcgtcgagc ggtacttcga 2640 cgatcttacg gtgagtgccc aactccaaag tgtgaaggtg acatctccac atctgcaatc 2700 aatcctcctc tccattccgg agaacaactc gcacaacgaa tattaattac cagatcttag 2760 ccggatttgg gatagggttt atagtaagta ttccctgtac attagctctc acgtactttg 2820 tttacaataa agtttcagac accactagag aggtggtgaa tgaattcagt aggccgtaga 2880 ggacctagaa gagcaaacaa tggcacaaga aggcggcgcc gtagagcaat tcggccagtg 2940 gttgtggtcc aatccaatcg agcaggaccc agacgacgaa atgctagacg cgcaagagga 3000 agaaggccaa attctgtatt tggaccaaaa cgcggggctg aggtattcgt attctcagtc 3060 gacaacctta aagccaattc ctccgggatc atcaaattcg gtcccgattt atcgcaatgc 3120 ccagcggttt cagacggagt acttaagtcc taccacaatt acaagatctc aagtgtcaac 3180 gttgagttta agtcacacgc gtcctccact acgtccggcg ctatgtttat tgaactcgac 3240 acctcgtgca aacaatcagc cttggctagc tacattaact cattcaccat cagcaaatct 3300 gcctcaaagt ccttcaaagc gacggagatt ggagggaccc aattccaggc atcttcggtg 3360 aatcagttct ttctactata caaagccaat ggtaccacga gtgacaccgc aggacagttc 3420 atcatcaaac ttgaaataca tctgatgact gccaaatagg tagactcctc aacaccggaa 3480 cctacacctg caccagcccc acaaccggcc ccacagcctg cacctgaacc aacacctgca 3540 cctgtcccta agcgcttttt cgagtacatt ggtactccta tgggcgtcat ttcaacacgt 3600 gaaaacactg acagcatatc tgttagtcag ttaggcggac aatccatgca gtacattgaa 3660 aatgagaaat gtgagaccag aaccattgat tccttttgga gcactaacaa taacgtagca 3720 gcgcaggctg ctttcgttta tccagtgcca gaagggtctt acagtgtaaa catttcttgt 3780 gagggccttc aatctgttga ccacatcggt ggcaacgagg acggatattg gattggcatc 3840 attgcctatt ctaattcatc cgatgacaat tggggaatag gaaattacag agggtgtagt 3900 tttaaaaatt atttggcaac aaatacttgg agacctggtc acaaagatct caaacttaat 3960 gattgccaat tcacaggcgg acaaatagtt gaaagggatt ccatcatatc atttcacgtg 4020 gaagctacag gtgctgatgc ctgtttttat ctgatggccc caaaaacaat gaaaaccgac 4080 aaatacaact atgttgtctc gtatggagga tatacaaaca agagaatgga gtttggcacc 4140 atatcagtaa cctgtgatga atccgatgtt gaggcaatac gcattgcgaa acactccgca 4200 actccaaacc gtgctaacca cctcttggtt agcgaacaat atcaagacgc actacccact 4260 attgaaaacc aaggactgtg tgatgtggaa actcccggtc aacaaacaaa cgtagtggaa 4320 gaggatgaca agcaatctgt ttccaccgaa cctgaaatag ctgtcaagga atacgaagct 4380 gctgttgctg agattcctga tgctgaagag gatgtgttgc cctccaagga acagttgtcg 4440 tccaaacctg tggatacatc cggtaacacc ataccgagaa ccaaggaacc tgaaatactt 4500 ggtacctatc agggacagaa catttaccct gaagatgtac caccagttgc tcgacaagcg 4560 ttgcgtgaag cagctaaagc tccttccacc atgttatatg atagagcccc caaaggagct 4620 aaatcgattt tatctcgatt tgtggaaggc aataggtcca aggcagcacc ggttgccccc 4680 tctgtgtcaa caacttcaaa tatgacaagg gaacaactta aagagtatac ccgtattagg 4740 aatagtttag gtgtaacagc cgcaaaggag tacaaggcgc aattcctgtg aagacaaaca 4800 ccactcacaa ctgctggatc ctgggaaaca ggcagaactt aggttcgtaa gctcgggtga 4860 ctggaaggtg ggctgtcaac ccaccaccaa ctcaccgtcg catcactgtt gtgtggccga 4920 tgaatgatat tcatgttatc gctgtttgtg tactcgctac aaccgtttta actggcttag 4980 ccgctgctgt aggttgttgc ttcggctgtg ttcgaaccct taatgcactt tgttctgtgt 5040 aaagtgcacc caaaaatatc ggggagcttc ggctcagtga gaggattaac gaccctcaga 5100 aaaggaaggt cttggcggac ttgaataacc cgttataaga caagtggaaa cctaccaccg 5160 atcaaataag gtagcttgct tctgagctgt acacagtccc tgcgaaaccg gggtaaacaa 5220 ctataatcac ccaactcgat gaaacgagag tggaggtgac ggggtgggtg acctcgtgat 5280 gtacacccga tcgtcaggtt tgaagacgct aaaacacgac gagatgggaa cactcgttaa 5340 aagttcctcg gctgatacac ccagtcgacc gaaacagttt ggcataccct tgatacggaa 5400 caagggtcct tgagagccac tacctgtgat gcaaggtagg gtaagagtct tagcaagctc 5460 tgtactcggg gatggacata aaccatagca ctccaactgg atatcggacg tcggttcctc 5520 gacactaggt gggacgtgcc actggcctgt ttcaagcaat ctagctctgc ttgaaacagt 5580 atttcatagg agcaattcta tggggggact ggattctgac tgccgacact cgcaagagaa 5640 gttcggcatc cc 5652 //