Dbfetch
ID EU332310; SV 1; linear; genomic RNA; STD; VRL; 5660 BP. XX AC EU332310; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 05GG5 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5660 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5660 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5660 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; 8d9438794a05b70130da645a177ac072. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5660 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="05GG5" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Gangu" FT /db_xref="taxon:2169986" FT CDS join(142..1161,1161..2747) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FKL8" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKL8" FT /protein_id="ABY73559.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGMDEAWTD FT FFLKSRGGVYAPLNCEPKAIELNAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLKLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASTWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT LEGLCTASGFESPFTILGLPEIAVTDGARLRKVSSNINYLTQTHLGLVYKAPNASLHNA FT LVAIERRVFTVGKGDSAIYPPHPEYDIFSETMGYFAESIVNKVGYCKTYTPQQLALSYS FT AGKRAQYFKAIESLKKEPYQMKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT FT RLKFNEKKIMHAIDGMFGSPTVLSGYDSFTQGGIIASKWQKFASPVAIGVDASRFDQHV FT SEQALKWEHGIYNGVFGDNELALALEHQLVNNIKMFVEDKMLTFKVRGHRMSGDINTSM FT GNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITERADEHLFGGMYDHFLKYGFNMVTE FT TPVYELGELEFCQSKPVRIGGNYRMVRRPDCIGKDSNTLLSMRNESDVKSYMSAVAQCG FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFEETPITTDNR FT MSYWESFGVDPKIQQLVERYYDNLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY" FT CDS 142..1164 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKL9" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKL9" FT /protein_id="ABY73560.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGMDEAWTD FT FFLKSRGGVYAPLNCEPKAIELNAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLKLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASTWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT " FT CDS 2861..4795 FT /codon_start=1 FT /transl_except=(pos:3458..3460,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FKM0" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FKM0" FT /protein_id="ABY73564.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAKXVDSSTPEPKPTPAPTPPPQPEP FT KPEPTPAPPPKRFFEYVGTPTGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVQASGKDACFY FT IMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMSRHSESPTRVNNIL FT IDEGYHQTLSPIQNLGLCDVQTPGQDEVEEDDKQTVSTEPDIALQEYEAATAEIPDAEE FT DVLPSKEQLSSKPVDTSGEVIPKPPPKDNEILGVYQGQPIYSDDVPPIARQKLRDAAKA FT PSTLLYDKAPKSKSFLSRFVEGNRSKTETTAPSTATTSNLTREQLREYTRIRKTLGLTA FT AREYKAQFS" FT CDS 2861..3460 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FKM1" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B0FKM1" FT /protein_id="ABY73561.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAK" FT CDS 2901..3362 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKM2" FT /protein_id="ABY73562.1" FT /translation="MAQEGGAAEQFGQWLWSNPIEQDPDDEMLDAQEEEGQILYLDQNA FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLGHTRPPL FT RRALCLLNSTPRASSQPYLATLTHSPSANQPQSPSAQRRLEGPSSRRHR" FT CDS 4928..5050 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="GOA:B0FKK5" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKK5" FT /protein_id="ABY73563.1" FT /translation="MDDLHVIALCVLSSTILAGTALVIGCCVGCCRLIDAAYSV" XX SQ Sequence 5660 BP; 1620 A; 1369 C; 1343 G; 1328 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgca acagagtcct acagctgcct gacaagcctg tagccccctt 120 cttccccttt cactcgccat catggtgttc tttgagatgc tcatcggtgc cagcgtaaag 180 gctgtcaaag acttcatcag ccactgctat tccagactca agagtatata ctactctttc 240 aagagatggc tgcttgagat atccgggcaa ttcaaggccc atgacgcctt tgtcaacatg 300 tgctttgggc acatcgctga catcgaggac ttcgaggcgg agctcgctga ggagtacgcc 360 gagaaggagg aggagatcga ggaagcgcga agcttgctcc gcttgttaac tgcccaaaag 420 tctaaatctg ggatggacga ggcttggacc gacttctttt tgaagtcgag aggaggcgtt 480 tatgcgccac ttaactgcga gccaaaggcc atagagctta atgctaaagc ggacaaactg 540 gagaagctcc ttgaggacat gcacctgttc gaggtgcgcg cggccaaaac ctacatcaaa 600 gaaaagggcc gtggattcat caactgctgg aatgaccttc gatcaaggtt gaagttggtg 660 aagtctgtca aagacgaggc caaggacaac attaaagcgg cctccaagat tggtgtggag 720 ttctctgctc caaccaatat tgctgatctt tacacattca ctgaggttac aaaggtagag 780 acaggtctta ccaaggagac gactagggtt gtcaacgggg aggaggagac ctccaccgta 840 cccctggttg aggacgtccg gaagataaag gacgacgaag ttagcaggga gagtgcctcc 900 acttggatca gagaggtaat caaattgaaa aattccaccc tctctgctga cgagctttcc 960 ctggcgacca tcgccaggta tgtggaaaat ttaggggaaa aatacaaact tgacattgca 1020 tccaagacat atctcaaaca atgtgcaatg atttcggtac caatcccctc ccaaaaagac 1080 ataaaaacaa agatggtgat ccaaagccct gctgcccgtg cacttcgtga gcgcgtggca 1140 gttcttgact cccagggttt ttagaggggc tctgtaccgc ctccggtttt gaaagcccat 1200 ttaccattct tggcttaccg gagatagcgg tcacagacgg agcccgactc cgtaaggtta 1260 gtagtaatat taattacctt acccaaaccc atctaggcct tgtatataaa gcacccaatg 1320 catccctgca caacgcgctc gtagctattg aaaggagagt gtttacagta ggaaaggggg 1380 attctgctat ctaccccccc cacccagaat atgacatttt ctcagaaaca atgggctact 1440 ttgctgagtc cattgtcaac aaggtgggat actgtaaaac atacacccct caacaactgg 1500 ctcttagtta cagtgcaggg aagagggccc agtatttcaa agccattgag tccttgaaga 1560 aggaaccata ccaaatgaag gactcaaacg tgcaggcatt cctcaagaag gagaaacact 1620 ggatgaccaa agccatcgcc cctcgcctga tttgcccccg ctccaagcgg tacaatatca 1680 tcctaggaac tcgtttgaaa ttcaacgaga agaagatcat gcatgccatt gacggcatgt 1740 ttggatcccc cactgtgctt tcaggctatg atagcttcac ccaaggcgga atcatagcca 1800 gtaagtggca aaagtttgca tcacccgttg ctatcggtgt tgatgctagc cgctttgacc 1860 aacatgtgtc tgagcaggcg cttaagtggg aacacgggat atacaatggc gtttttggcg 1920 acaatgaatt ggcccttgct ctcgaacatc agcttgtaaa taatattaaa atgttcgttg 1980 aggataagat gctaaccttc aaagttagag gccatagaat gtcaggggac attaacacca 2040 gcatgggaaa caagctcatc atgtgtggca tgatgcatgc ttactttaag aagctgggtg 2100 ttgaagcgga actctgtaac aatggagatg attgtgtcat cataactgaa agggctgatg 2160 aacacctttt cggtggaatg tatgaccatt tccttaaata cggcttcaac atggtgacgg 2220 aaaccccggt ttacgaactc ggggaacttg aattttgcca atctaaaccc gtcagaattg 2280 gtggcaatta tagaatggtc cgtaggcccg attgcatagg aaaagatagt aacacacttt 2340 tgagcatgcg caatgaatcc gacgtcaaaa gctacatgtc ggctgtggct cagtgtggtc 2400 tcgttttgaa tgcgggtgta cccatactcg aaagcttcta ccgctgtctg tatagaagct 2460 cggggtacaa gaaagtaagt gaggaataca tcaaaaacgt tatatcatat ggaacagatg 2520 aacgccttca aggtagacgt acctttgagg agacacctat caccactgac aatcgtatgt 2580 catattggga atcatttgga gttgacccta agattcaaca acttgtcgag aggtactacg 2640 acaatcttac ggtaagtgcc caactccaaa gtgtgaaggt gacatctcca catctgcaat 2700 caatcctcct ctccattccg gagaacaact cgcacaacga atattaatta ccaaatctta 2760 gccgggtttg ggatagggtt tattactagt attccctgta cattagctct cacgtacttt 2820 atttacaata aagtttcaga caccactaga gaggtggtga atgaattcag taggccgtag 2880 aggacctaga agagcaaaca atggcacaag aaggcggcgc cgcagagcaa ttcggccagt 2940 ggttgtggtc caacccaatc gaacaggacc cagacgacga aatgctagac gcgcaagagg 3000 aagaaggcca aattctgtat ttggaccaaa acgcggggct gaggtattcg tattctcagt 3060 cgacaacctt aaggccaact cctccgggat cctcaaattc ggtcccgatc tatcgcaatg 3120 cccagcggtt tcagacggag tacttaagtc ctaccacaat tacaagatct caagtatcaa 3180 cgttgagttt aggacacacg cgtccgccac tacgtcgggc gctatgttta ttgaactcga 3240 cacctcgtgc aagcagtcag ccttatctag ctacattaac tcattcacca tcagcaaatc 3300 agcctcaaag tccttccgcg cagcggagat tggagggacc cagttccagg cgacatcggt 3360 gaatcagttc tttcttctgt acaaggcaaa tggcacgacg accgatattg cggggcagtt 3420 tatcataaag attgagcttc acttaatgac tgccaaatag gtagactcct caacaccgga 3480 acctaaaccc acaccagctc caacaccccc ccctcaacct gagcccaaac cagagcccac 3540 acctgcacct ccccctaaac gcttctttga gtatgttggc accccgaccg gagttatatc 3600 aactcgggaa aacactgata gcatatctgt atctaagctt gggggtcagt caatgcagta 3660 catagagaac gagaagtgtg agacaaaaac catcgactct ttctggagca caaacaacaa 3720 cgtttcggcg caagccgcct tcgtttttcc agtgccagaa ggatcgtaca gtgtgaatat 3780 ctcgtgtgaa ggcctgcaat ccgttgacca cattggtggc aacgaagatg gctattggat 3840 cgggcttata gcctactcta attcatcagg tgacaattgg ggtgtgggta actacaaagg 3900 gtgtgtgttt acaaatttct tggcaacgaa tacctggcga ccaggtcaca aggatttaaa 3960 acttaacgat tgccaattca cagacggaca aatagttgaa agggatgcag ttatgtcttt 4020 ccacgtgcaa gcatcaggca aggacgcctg tttctacata atggctccca aaacaatgaa 4080 aactgacaaa tacaactatg ttgtctcgta tggagggtac acgaacaaaa ggatggagtt 4140 cggtactatc tccgttacgt gtgatgaatc cgatgttgag gcactccgta tgtccaggca 4200 ctccgagagt cccacccgcg taaataacat tttaatagat gaaggatacc atcagacttt 4260 gtctcccata caaaatttag gactgtgtga tgtgcaaact cccggtcaag atgaggtaga 4320 ggaggatgat aaacaaactg tttccactga acctgatata gcgctgcagg aatacgaggc 4380 tgcaacagct gagattccag acgctgaaga ggatgttttg ccctctaagg aacagctttc 4440 atctaaacct gtggacacat ccggcgaggt aattccaaaa cctcccccga aggacaatga 4500 aatccttgga gtctaccaag gtcaacctat atactctgat gatgtgccac ctattgccag 4560 gcagaaactt cgagacgctg ccaaagcacc ctccaccctg ctatacgaca aggcaccaaa 4620 atccaagtcg tttttatccc gttttgtgga agggaacagg tccaaaacag aaaccactgc 4680 tccatcaacc gcaacgacat ctaatttgac cagggagcag cttcgtgaat atactagaat 4740 tagaaaaacc ttaggtctta ccgccgcaag ggagtacaag gcacaatttt cgtgaagaca 4800 aacaccactc gcgcaaatcg gatcctggga aacaggctga acttatgttc gtaagctcgg 4860 gtgattggag ggtgggctgt caaccccacc cacccaactc accgccgtat cgtattgcgt 4920 gtggccgatg gatgatcttc acgttattgc cctctgtgtc ctctcctcaa ccatcctggc 4980 tggtacagcg ctagtgattg gttgttgcgt cggttgttgc aggttaatag acgcggctta 5040 ttctgtgtaa gttgcgacca aaaatatcga ggaagcttcg gcttagtgag aggattaacg 5100 accctcagca atggctggtc ttggcaagtc tgaataactt gctataagac aactggaaac 5160 ccaccagtga tcaaataagg tagcttgctt ctgagctata cactgccccc gcgcaatcgg 5220 ggtaaacaac cataactgcc caactcgatg aaacgagagt ggaggtggcg gagtgggtga 5280 cttcgtgatg tgcacccgaa cgtcaggttt gaagacgtta taaaacacag cgagatgaga 5340 acctcgttaa aagtttctcg gctgatacac ccagtcgacc ggacctgttg gcataccctt 5400 gatacgaaac aagggcttct gagagccact acctgtgatg caaggtaggg taagagtctt 5460 agcaacctct gtactcggaa gtggacataa accatagcaa tccaacagca tcccggaaga 5520 gagttttcct caacaggtga aacgtgccac gggcctgttt caagcaatct agctctgctt 5580 gaaacagtat ctcatagaag caattctatg gggggactgg attctgactg ccgacactcg 5640 caagagaagt tcggcatccc 5660 //