ID EU332309; SV 1; linear; genomic RNA; STD; VRL; 5675 BP. XX AC EU332309; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 05GG2 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5675 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5675 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5675 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; b8d470e7a4bef6996736614296cc6a17. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5675 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="05GG2" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Gangu" FT /db_xref="taxon:2169986" FT CDS join(141..1157,1157..2743) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FKL2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKL2" FT /protein_id="ABY73553.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYFSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMREVVKE FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKAYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCRTYPAQLLANSYSA FT GKRAMYHKAIASLKAVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDNELALALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMG FT NKLIMCGTMHAYFKKLGVEAELCNNGDDCVIITDRVNEELFSGMYDHFLQYGFNMVTEK FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL FT VLNAGVPILESIYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYSETPITNHSRM FT SYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENHSQNEY" FT CDS 141..1160 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKL3" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKL3" FT /protein_id="ABY73554.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYFSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMREVVKE FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKAYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF" FT CDS 2857..4809 FT /codon_start=1 FT /transl_except=(pos:3457..3459,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FKL4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B0FKL4" FT /protein_id="ABY73558.1" FT /translation="MNSVGRRGPRRANQNGPRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISKTASKVFRSEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAKXVDSSTPEPKPAPEPTPTPQPT FT PAPQPAPEPTPAPVPKRFFEYIGTPTGTISTRENSDSISVSKLGGQPMQYIENEKCETK FT VIDSFWSTNNNVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS FT SGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGT FT DACFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAERITRHAETPIR FT SKHILVSERYVEPMPTIIDQGLCDVKTPEQEQTLVDEEDKQTVSTEPDIALQEYEAATA FT EIPDAEEDVLPSKEQLSSKPMDTSGNKIPKPKEPEVLGTYQGMNIYPEDVPPLARQKLR FT EAAKAPTTLLYERTPKKSSNILTRYLESNRSPTTPAAPSVSTVSNMTREQLAEYTRIRR FT SLGLTAAKEYKAQFQ" FT CDS 2857..3459 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:Q2V8U5" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q2V8U5" FT /protein_id="ABY73555.1" FT /translation="MNSVGRRGPRRANQNGPRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISKTASKVFRSEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK" FT CDS 2900..3361 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKL6" FT /protein_id="ABY73556.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA FT GLRYSYSQLTTLKPTLPGQSNSAPVYRNAQRFQTEYSSPTIVTRSQVSELSLSHTRPPL FT RPALSLLNSTPRASNQPWVATLIPSPSAKPPPRSSGQRQLTGRNSRNQR" FT CDS 4916..5044 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKL7" FT /protein_id="ABY73557.1" FT /translation="MEDLHVIAACMLALTVLSGVGAILSCCKWCFSSSFPSPRASL" XX SQ Sequence 5675 BP; 1667 A; 1361 C; 1391 G; 1256 T; 0 other; gtgaagattg accatctcac aaaagctgtt acgtgcttgt aacacactac acacccgttt 60 tgtgttcggg aagtagttgc gaaaacggtc cccttattgt ctgacaagct aagggccacc 120 cttcttaccc caccgccatc atgtttttcg aaatactaat aggagctagc gctaaggcgg 180 tcaaggactt tattagccat tgttactcta gactgaaatc tatatatttt tcatttaaac 240 gatggctaat ggagatatct gggcaattta aggcccatga cgcctttgtc aacatgtgct 300 ttgggcatat ggcagacatt gaggactttg aggcggaact cgctgaggag ttcgccgaga 360 gggaagatga ggtggaagag gcgaggagcc tcttgaaact gctggtcgcc caaaaatcta 420 aaactggggt gaccgaggct tggaccgact tctttacgaa gtcgagaggt ggcgtttatg 480 cgccactttc ctgcgagcct accaggcagg agctagaagt taagagcgag aagctcgaaa 540 aacttctaga agaacagcac caattcgagg tgcgagcggc caagaaatac atcaaggaaa 600 agggccgcgg cttcatcaac tgctggaacg acttgcgaag tcgtctcagg ctggtgaagg 660 acgtcaagga cgaggcgaag gacaatgcta gagctgctgc caagattgga gcagaaatgt 720 tcgcccccgt tgacgtgcag gacctctaca gctttacaga ggtcaagaag gtggagaccg 780 gcctcatgag ggaggtcgta aaggagaaaa acggcgaaga agagaaacac ctcgagccca 840 tcatggaaga ggtgaggtct atcaaggaca ccgccgaagc cagggacgcc gcctccacct 900 ggataacaga gacagttaag ctgaagaact caacgcttaa cgcagatgaa ctgtctcttg 960 ccaccatcgc ccgctatgtt gaaaacgtag gggacaaatt caaactcgac attgcaagca 1020 aagcatacct aaagcaagtc gcatcgatgt ctgtaccaat cccaaccaac aaagacatca 1080 aattgaagat ggtgctgcag agtcctgaag cacgtgccag gcgggaacgc atggacgtgc 1140 ttgactctgt gggtttttag aggggctctg taccgcctct ggttttgaga gcccatttcc 1200 cattctcggg ctgccagaga tcgcggtcac agacggagcc cggctccgta aggttagtag 1260 taatattaga taccttagcc aaacccatct aggtcttgta tacaaggcac caaatgcctc 1320 cctgcacaac gcgcttgtag cagtggagag aagagttttt acagtaggaa agggggataa 1380 agctatctac cccccccgcc ctgagcatga cattttcact gatacgatgg attacttcca 1440 aaaatccatt atagaagagg tgggatactg tagaacatat ccagcgcaac tcctggctaa 1500 cagttatagc gcaggaaaga gggccatgta tcacaaagcc attgcatcct tgaaggctgt 1560 cccttatcat cagaaggatg ccaatgtgca agctttcctg aagaaggaaa aacattggat 1620 gaccaaggac atcgcccccc ggttgatttg cccccgcagc aagcggtaca acattatcct 1680 aggaactcgt ttgaaattca acgagaagaa gatcatgcac gctattgata gtgtgtttgg 1740 atcccccact gtgctttctg gctatgacaa cttcaagcaa ggaaggatta tagccaagaa 1800 gtggcaaaag tttgcatgcc ccgtcgccat cggcgtggat gctagtcgct ttgaccaaca 1860 tgtgtcagag caggcgctta agtgggaaca cgggatatac aatgggatct tcggggacaa 1920 cgaactggct cttgcacttg aacaccaaat caccaacaac atcaaaatgt ttgttgaaga 1980 caaaatgctt aggtttaagg taagaggcca cagaatgtcc ggtgacatta ataccagcat 2040 gggaaacaag ctgataatgt gtggcacgat gcacgcatat ttcaagaagc tgggtgttga 2100 agctgagcta tgcaataatg gggatgattg tgtcatcata actgacagag tgaatgaaga 2160 actcttcagt ggaatgtatg accatttcct acaatacggc ttcaacatgg tgaccgagaa 2220 gccagtttac gaactggaac aactagaatt ttgccagtca aaaccggtct ctattaatgg 2280 aaagtataga atggtcagaa ggcccgatag cataggcaaa gatagcacaa cactactgag 2340 catgctcaat caatccgacg tcaagagcta catgtcggct gtggctcagt gtggtttagt 2400 gctaaacgct ggagtaccca tacttgaaag tatctacaag tgcctatata gaagctcggg 2460 gtacaagaaa gtgagtgagg aattcatcaa aaacgtcatt tcgtatggaa cagatgagag 2520 actacaaggt agacgtacct attcggaaac acctatcaca aaccacagta gaatgtccta 2580 ctgggaatca ttcggagttg accctaagat acagcaaatc gtcgagaggt actacgacgg 2640 tcttacggta agtgcccaac tccagagtgt gaaggtgacg actccacatc tgcaatcaat 2700 actgctttcc ataccggaaa accactcaca aaacgaatat taattaccaa atcttagctg 2760 ggtttgggat agggttcata gttagtatac cctgtacatt agctctcgcg tactttattt 2820 acaataaagt ttcagacacc actagagagg tggtgaatga attcagtagg ccgtagagga 2880 cctagacgcg caaatcaaaa tggcccaaga aggaggcgcc gtagaacagt tcggccagtg 2940 gttgtggtcc aacccaatcg agcaggaccc agacgacgaa atggtcgacg caagggaaga 3000 ggaggggcaa atcctgtatt tagaccaaca ggcgggactg aggtattcgt attctcagtt 3060 gacaacctta aagccaactc ttccggggca atcaaattcg gccccagtct atcgcaatgc 3120 ccagcgcttt cagacggaat actcaagtcc taccatcgtt acaagatcac aagtatccga 3180 gttgagttta agtcacacgc gtccgccact acggccggcg ctatctttat tgaactcgac 3240 accgcgtgca agcaatcagc cctgggtagc tacattaatt ccttcaccat cagcaaaacc 3300 gcctccaagg tcttccggtc agaggcaatt aacgggaagg aattccagga atcaacgata 3360 gaccaatttt ggatgctcta taaggccaat ggaaccacca ctgacacggc aggacaattc 3420 atcattacga tgagtgtcag tttgatgacg gccaaatagg tagactcctc aacaccggaa 3480 ccgaaacctg caccagaacc aacaccaact ccacagccaa caccagctcc acaacccgca 3540 ccggaaccaa ctcctgcacc tgtccccaaa cgattctttg agtatatcgg tactccaacc 3600 ggtacaatct caactagaga aaactctgac agtatatctg tcagtaagct cggtggacag 3660 ccgatgcagt atatagagaa tgagaaatgt gagacgaaag tcattgattc cttttggagc 3720 actaacaaca acgtatctgc gcaagcagca ttcgtctatc cagtgccaga gggatcatac 3780 agcgttaaca tttcgtgcga gggttttcaa tcagttgacc acattggtgg taacgaagat 3840 ggctactgga ttggtttgat tgcctactcc aattcatctg gtgataattg gggtgtcggc 3900 aattacaaag ggtgtagttt caaaaatttc ttggcaacca acacttggag accaggccac 3960 aaagatctca agttaaatga ttgccagttc acagatggac aaatagttga aagggatgcc 4020 gtgatgtctt tccatgtaga agcaacaggt actgatgcct gtttctacct tatggctccc 4080 aaaacaatga aaactgacaa atacaactat gttgtctcat acggagggta caccaacaag 4140 cgaatggaat tcggtaccat atctgtgaca tgtgatgagt ccgatgttga ggcagaacgc 4200 ataacaaggc acgctgaaac ccccatccgc tccaaacata ttcttgtgtc cgaacggtat 4260 gtggagccaa tgcccaccat aattgatcaa ggcttgtgtg acgtgaaaac tcccgagcaa 4320 gaacaaacac tggtggatga agaagacaag caaactgttt ccacagaacc tgatatagca 4380 ctccaggaat atgaggctgc aacagctgaa attcctgatg ctgaagagga tgttttgccc 4440 tccaaggaac agttgtcttc taaaccaatg gacacgtccg gcaacaaaat accaaaaccc 4500 aaggaacctg aagtacttgg gacataccag ggcatgaaca tttaccctga ggacgtgcca 4560 cccctagcgc gacaaaaact acgtgaagcc gccaaagcac ctaccacgtt gctctacgaa 4620 agaacgccaa agaagagcag caatatcttg actcgttatt tggagtctaa taggtcccct 4680 accactcccg ctgccccatc agtgtcaact gtatcaaata tgacaaggga acagcttgcg 4740 gagtacacta gaattaggag atcccttgga ctcacagcag caaaggaata caaggcgcag 4800 tttcagtgaa gataacacca ctagcacaat tcggatcctg ggaaacaggc agaacttcgg 4860 ttcataagct cgggtaggct gtcaacctac cgccgtatcg ttttgtgttt ggccgatgga 4920 agatcttcac gttatcgccg cttgtatgct tgctttgact gtgctctcag gggtaggcgc 4980 tatcctgagc tgttgcaaat ggtgcttcag ctcttccttt ccctcccccc gcgcttctct 5040 ttagcaaaac ccgtttcccg gtctgtgcgg gaaacaacca aaaatatcgg ggagctccgg 5100 ctcagtgaga ggattaacga ccctcagtaa ttggctggtc ttggcggaca tgaataaccc 5160 gctataagac gaagtggtaa ccgccactga tcaaatggtg gacatgcttc tgtgttgtac 5220 actgccccgg ggccaaccgg gtcaacaagg ctatcccacc aactcgatga aatgagagtg 5280 gagtgggcgg agtgggtgac ttcgtgatgt acacccgatc gtcaggattg aagacgttaa 5340 aactcgatga cctggtgcaa gtcgttaaac tgactcgggt ggatacacca cacccggccc 5400 agcatgttgg catacccacg atacgaaacg tgggtctctt ggagccacta cctgtgatgc 5460 aaggtagggt acgagtctta gcaagctctg tgccaggaga tggacataaa ccatagcaat 5520 ccaacgtgtt acagctctgg ggcgaaccgc aggtgaaccg tgccacgggc ctggttaccg 5580 aaaggaaagc cagtatccaa cacagcaatg tgttgggggt tacacccttc ggggtactct 5640 taacgctgac actcgaaaga gcagttcggc aaccc 5675 //