ID EU332308; SV 1; linear; genomic RNA; STD; VRL; 5664 BP. XX AC EU332308; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 04ZZ5 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5664 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5664 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5664 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; 8a03f9abb406fb8a843224bc9a8a4eec. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5664 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="04ZZ5" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Zhengzhou" FT /db_xref="taxon:2169986" FT CDS join(142..1161,1161..2747) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FKK6" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKK6" FT /protein_id="ABY73547.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT LEGLCTASGFESPFTILGLPEIAVTDGARLRKVSSNINYLTQTHLGLVYKAPNASLHNA FT LVAIERRVFTVGKGDSAIYPPHPEYDIFSETMGYFAESIVNNVGYCKTYTPQQLALSYS FT AGKRAQYFKAIESLKKEPYQMKDANVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT FT RLKFNEKKIMHAIDGMFGSPTVLSGYDSFTQGRIIASKWQKFASPVAIGVDASRFDQHV FT SEQALKWEHGVYNGIFGDNELALALEHQLVNNIKMFVEDKMLTFKVRGHRMSGDINTSM FT GSKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITERANEHLFGGMYDHFLKYGFNMVTE FT TPVYELGELEFCQSKPVRIGGNYRMVRRPDCIGKDSNTLLSMRNESDVKSYMSAVAQCG FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFEETPITTDNR FT MSYWESFGVDPKIQQLVERYYDNLTVSAQLQSVKVTSPHLQSILLSIPENSSHNEY" FT CDS 142..1164 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKK7" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKK7" FT /protein_id="ABY73548.1" FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF FT " FT CDS 2861..4801 FT /codon_start=1 FT /transl_except=(pos:3458..3460,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FKK8" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FKK8" FT /protein_id="ABY73552.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAKXVDSSTPEPKPTPAPTPAPTPEP FT KPEPTPAPPPKRFFEYVGTPIGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEASGKDACFY FT LMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMTRHSECPTRVNNIL FT IDEGYCQPLSTITDQGLCDVQTPGQDQEVVEEDRQTVSTESDIALKEYEAAIAEIPDAE FT EDALPSREQLSSKPVDTSGEEIPKPRPPSNEVLGVYQGQPIYADDVPPGTRQKLRDAAK FT APSTLLYDKTPKRSKSILSRFIEGNRSSVESAAPPTATTSNLTREQLREYTRIRNTLGL FT TAAKEYKARLS" FT CDS 2861..3460 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FKK9" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B0FKK9" FT /protein_id="ABY73549.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAK" FT CDS 2901..3362 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKL0" FT /protein_id="ABY73550.1" FT /translation="MAHEGGAVEQFGQWLWSSPIEQDPDDEMLDAQEEEGQVLYLDQNA FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLEHTRPPL FT RRALCLLNSTPRASNQPYLATLTHSPSANPPQSPSAQRRLEGPSSRRHR" FT CDS 4930..5052 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKL1" FT /protein_id="ABY73551.1" FT /translation="MDDLRIIALCALSSTILFTIALVSSWCASCCKFIDAACSV" XX SQ Sequence 5664 BP; 1590 A; 1369 C; 1362 G; 1343 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgca atagagtcct acagttgcct gacacgcctg tagccccctt 120 cttccccttt cactcgccat catggttttc tttgagatgc tcatcggtgc cagcgttaag 180 gcagtcaaag acttcatcag ccactgctat tctagactca agagtattta ttactctttt 240 aagagatggc tgcttgagat atccgggcaa ttcaaggccc atgacgcctt tgtcaacatg 300 tgctttgggc acatcgctga catcgaggac ttcgaggcgg aactcgctga ggagtacgcc 360 gagaaggagg aggagatcga ggaggcgcga agcttactcc gcttattgac tgcccagaag 420 tctaaatctg gggtggacga ggcttggacc gacttctttt tgaagtcgag aggcggcgtt 480 tatgcgccac ttaactgcga gccaaagtcc atagagcttg atgccaaagc ggacaagttg 540 gagaagctcc tcgaggacat gcacctgttt gaggtgcgcg cggccaagac ctacatcaag 600 gagaagggcc gtggattcat caactgctgg aatgaccttc gatcaaggtt gcagttggtg 660 aagtctgtca aagatgaggc caaggacaat atcaaagcgg cctccaagat tggtgtggag 720 ttctctgctc caaccaatat tgctgatctc tacacattca ctgaggttac aaaggtagag 780 acaggtctta ccaaggagac aactagggtt gtcaacgggg aggaggagac ttccaccgta 840 cccctggttg aggacgtccg gaagatcaag gacgatgaag tcagcaggga gagtgcctcc 900 aattggatca gggaggtaat caaactgaaa aattccaccc tctcagctga cgagctttcc 960 ctggcgacca tcgccaggta tgtagaaaat ttaggggaaa aatacaaact tgacattgct 1020 tccaaaacat atctcaagca atgtgcaatg atttcagtgc caatcccctc ccaaaaagat 1080 ataaaaacaa agatggtgat ccaaagccct gctgcccgtg cacttcgtga gcgcgtagca 1140 gttcttgact ctcagggttt ttagaggggc tctgtaccgc ctccggtttt gaaagcccat 1200 ttaccattct tggcttaccg gagatagcgg tcacagacgg agcccgactc cgtaaggtta 1260 gtagcaatat taattacctt acccaaaccc atctaggcct tgtatataaa gcacccaatg 1320 catccctgca caacgcgctc gtagccatcg aaaggagagt gtttacagta ggaaaggggg 1380 actctgctat ctaccccccc cacccggaat atgatatttt ctcagagaca atgggctact 1440 ttgctgagtc tattgtcaac aacgtgggat actgtaaaac atacacccct cagcaactgg 1500 ctcttagtta cagtgcaggg aagagggccc agtattttaa agccattgag tccttgaaga 1560 aggaaccata tcaaatgaag gacgcaaacg tgcaggcatt cctcaagaag gagaaacact 1620 ggatgaccaa agccatcgcc ccgcgcctga tttgcccccg ctctaagcgg tacaatatca 1680 tcctaggaac tcgtttgaaa ttcaacgaga agaagatcat gcatgccatt gacggtatgt 1740 ttggatcccc cactgtgctt tcgggctatg atagctttac ccaaggcaga atcatagcca 1800 gtaagtggca aaagtttgca tcacccgttg ctattggtgt tgatgctagc cgctttgacc 1860 aacacgtgtc tgagcaggcg cttaagtggg aacacggggt atacaatggc atttttggcg 1920 acaatgaatt ggcccttgct ctcgaacatc agcttgtaaa taatattaaa atgttcgttg 1980 aggataagat gctaactttt aaggttaggg gccacagaat gtcaggggac atcaatacca 2040 gcatgggaag caagctcatc atgtgcggca tgatgcatgc ttacttcaag aagctgggtg 2100 ttgaagcgga actttgtaac aatggagatg attgtgtcat cataactgaa agggccaatg 2160 aacacctttt cggtggaatg tatgaccatt tcctcaaata cggcttcaac atggtgacgg 2220 aaaccccagt ttatgaactc ggggaacttg aattttgtca atctaaaccc gtcagaattg 2280 gtggcaatta tagaatggtc cgcaggcccg attgcatagg aaaagatagt aacacacttt 2340 tgagcatgcg caatgaatcc gacgtcaaaa gctatatgtc ggctgtggct cagtgtggtc 2400 tcgttttgaa tgcgggtgta cccatactcg aaagcttcta ccgctgcctg tacagaagct 2460 cggggtacaa aaaagtaagt gaggaatata tcaaaaacgt catatcatat ggaacagatg 2520 aacgccttca aggtagacgt acctttgagg agacacctat caccactgac aatcgtatgt 2580 catattggga atcatttgga gttgacccta agattcaaca acttgtcgag aggtactacg 2640 acaatcttac ggtaagtgcc caactccaaa gtgtgaaggt gacatctcca catctgcaat 2700 caatcctcct ctccattccg gagaacagct cgcacaacga atattaatta ccaaatctta 2760 gccgggtttg ggatagggtt tattactagt attccctgta cactagctct cacgtacttt 2820 atttacaata aagtttcaga caccactaga gaggtggtga atgaattcag taggccgtag 2880 aggacctaga agagcaaaca atggcacacg aaggcggcgc cgtcgagcaa ttcggccagt 2940 ggttgtggtc cagcccaatc gaacaggacc cagacgacga aatgctagac gcgcaagagg 3000 aagaaggcca ggttctgtat ttggaccaaa acgcggggct gaggtattcg tattctcagt 3060 cgacaacctt aaggccaact cctccgggat cctcaaattc ggtcccgatt tatcgcaatg 3120 cccagcggtt tcagacggag tacttaagtc ctaccacaat tacaagatct caagtatcaa 3180 cgttgagttt agaacacacg cgtccgccac tacgtcgggc gctatgttta ttgaactcga 3240 cacctcgtgc aagcaatcag ccttatctag ctacattaac tcattcacca tcagcaaatc 3300 cgcctcaaag tccttccgcg cagcggagat tggagggacc cagttccagg cgacatcggt 3360 gaatcaattc tttcttttat acaaggcaaa tggcactacg actgatattg cagggcagtt 3420 catcatcaga attgagcttc atctaatgac tgccaaatag gtagactcct caacaccgga 3480 accgaaaccc acaccagctc caacacctgc cccaacacct gagccaaaac cagaacccac 3540 acctgcacct ccccccaagc gtttctttga gtatgttggg actccgatag gggtcatatc 3600 tactcgggaa aacaccgaca gtatatcggt gtctaagctc ggtggccagt cgatgcagta 3660 tatagaaaac gagaagtgtg aaactaaaac catcgactct ttctggagca caaacaacaa 3720 cgtttcggca caagctgcct tcgtttttcc agtgccagaa gggtcgtaca gtgtgaatat 3780 ctcgtgtgaa ggtttacaat ccgttgacca catcggtggc aacgaggatg gctattggat 3840 tgggctcatt gcctactcca attcatcggg tgataactgg ggtgtaggta attacaaagg 3900 gtgtgtgttt acaaattttc tggcaacaaa tacctggaga ccaggacaca aggatttgaa 3960 acttaacgat tgccagttca cagacggaca aatagttgaa agggatgcag ttatgtcttt 4020 ccacgtagag gcttctggca aagatgcctg cttctacctg atggctccca aaacaatgaa 4080 aacagataag tacaactatg ttgtctcgta tggagggtac acgaacaaaa gaatggagtt 4140 cggtaccatt tctgtgacat gtgatgaatc cgatgttgag gcactccgca tgacccggca 4200 ctctgagtgc cctacccgcg tgaataatat tttaattgat gagggatatt gtcaacctct 4260 ttccaccata accgaccaag ggctgtgtga tgtgcaaact cccggccaag accaagaggt 4320 ggttgaggaa gacagacaaa ctgtttccac tgaatctgat atagcgctca aggaatacga 4380 agcggccatc gctgaaatcc ctgacgctga agaggatgct ttgccctctc gggaacaact 4440 ctcatctaaa ccagttgaca cgtcagggga ggagatcccc aaacccagac ccccaagcaa 4500 tgaggttctg ggtgtttacc aaggtcagcc catctatgct gatgacgtgc cacctggtac 4560 aaggcaaaag ctacgtgatg ccgccaaagc accttctacc ctgttgtatg acaagacccc 4620 aaaacggtcc aaatctattt tgtccaggtt tatagaaggg aataggtcct ctgtagaatc 4680 tgctgccccc cctacagcta ctacatccaa tctaaccagg gagcagctcc gggaatatac 4740 ccgcattagg aataccctag gtttaacagc tgcaaaagag tacaaggctc gtctttcgtg 4800 aagacaacac cactcgcaca aatcggatcc tgggaaacag gcagaacttc ggttcgtaag 4860 ctcgggtgac tggaaggtgg gctgtcaacc caccaccgac tcaccgccgt atcgtactgt 4920 gtgtggccga tggatgatct tcgcattatc gccctctgtg ctctgtcatc aactatactg 4980 tttaccattg cgttggtgag tagttggtgt gcaagctgtt gtaagttcat agacgcagct 5040 tgttctgtgt aagctgcaac caaaaatatc ggggagcttc tgctcagtga gaggattaac 5100 gaccctcggt aatggctggt cctggcaggc ctgaataacc tgctatagga caactggaaa 5160 cccaccagtg atcaaataag gtagcttact tctgagctgt acactgtccc tgcgcaatcg 5220 gggtaaacaa ctataaccac ccaactcgat gaaatgagag tggaggtggc ggagtgggtg 5280 acttcgtgat gtacacccga gcgtcaggtt tgaagacgcc ataaaacaca acgagatgag 5340 aacctcgtta taaaagttcc tcggctgata cacccagtcg actggacctg ctggcatacc 5400 cttgatacga aacaagggct tctgagagcc actacctgtg atgcaaggta gggtaagagt 5460 cttagcaacc tctgtacttg gaagtggaca taaaccatag caatccagca gcatcccaga 5520 agagagtttt cctcactagg tgaaaacgtg ccacgggcct gtttcaagca atctagctct 5580 gcttgagaca gtatctcata gaagcaattc tatgggggga ctggattctg actgccgaca 5640 ctcgcaagag aagttcggca tccc 5664 //