ID EU314803; SV 1; linear; genomic RNA; STD; VRL; 6226 BP. XX AC EU314803; XX DT 25-DEC-2007 (Rel. 94, Created) DT 25-DEC-2007 (Rel. 94, Last updated, Version 1) XX DE Cymbidium mosaic virus isolate M2 from Taiwan, complete genome. XX KW . XX OS Cymbidium mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6226 RA Lu H.C., Yeh H.H.; RT ; RL Submitted (03-DEC-2007) to the INSDC. RL Plant Pathology and Microbiology, National Taiwan University, 1 Sec. 4, RL Roosevelt Road, Taipei 106, Taiwan XX DR MD5; c34487293606b4923d10270c03dcf79d. XX FH Key Location/Qualifiers FH FT source 1..6226 FT /organism="Cymbidium mosaic virus" FT /isolate="M2" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /db_xref="taxon:12178" FT gene 74..4327 FT /gene="RdRp" FT CDS 74..4327 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:A9YZW3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A9YZW3" FT /protein_id="ABY27302.1" FT /translation="MARVRDTLDRLRDPSVLTSINEEAHRHIRPVLASALVNCPYALTE FT EEADCLENLGVTVNPFAIQTHTHAAAKTIENRMLEIVGTHLPKEPSTFIFLKRSKLRYL FT RRAANNKDIFQNQHIEPKDLLRYDDESCEVMPECSTSTAYISDALHFLSYAQLGKIFQD FT SPKLKILLATLVLPVEALHRHPSLHPAIYTLNYHEDGFEYILGNHAGGAYFHEYSTLQW FT LTLGKLIINDPLKVKKPLTLTVQLIESLGANHLLLITRGDLRTPKLRTFAKDTHVLLPQ FT IFHPKGMNANKPLSKRRAMQLWLYAKSVKEVSERDLYAKVRQLIPTSELDLFDPVEVTH FT LVNYLLFISHLSSVSSYDDILSSNIFQHFTIPIKNKIRELAQLFTGADQFNQLLKALDW FT QTFSYSMPVETIHTRAANYQVAKTLRMCRDLPYDEYDRVKDVLRQLPDGVTLFEENDKQ FT DPSSSEAENSEDDSDSVDFNLPPTHDLPPNFDPLNKGKSIIVDTDNPSTSMAPAVIFPA FT GINSSASTNITFGSFTPETEATPPPPMEKLPWDLWIPLLEQHGFKGKSKLYKPTGELIC FT PITEIKTVPHCPFPDKAPDGCVLALKSIKRFATKMTMLSSRASAYTSDIKNSRTGKLLP FT AMNMPWKASLAYVTQHGDREIPGVVIHGAGGCGKSYAIQKWLRSCSDPCAATVVCPTLE FT LRNDWLNKIGSYEQTNIKTFEKALIQPVNNVVIFDDYTKLPPGYIETMVYHHHNLDLII FT LTGDPMQSAYHETNRDAYISLIPDASAIFREYWEFNINATHRNVAELACLLGVYSERQG FT KLTVSFSTAPLSKGKVPILVPSRMKQEAFADVGNRCMTYAGCQGLTAPKVQILIDNHTA FT FCSEQTLYTCLSRAVGQIHFINTGPNSQAFWTKLESTPYLKAFLDNYREEQTERLTSTA FT PEPEVREPAAPKTHIPVENTSGLRISALDLPEKHSREIFNKAHGFSNAIQGDGVAPMFQ FT HQQAKDETLFKATIDARLSITHPNENKREFAMKKDTGDVLFVNYKAIMNLPHEPVPFEP FT RLWNICKAEVQNTYLAKPIANLINGTLRQSPDFPANKIALFLKSQWVKKIEKIGAIPVK FT PGQTIASFMQETVMLYGTMARYLRKMQQRYQPAHIFINCEKTPEDFNKFILEHWSHKQV FT AHTNDFTAFDQSQDAAMLQFEVIKARYFNIPEDVIEGYIQIKLTAEIFLGTLSIMRLSG FT EGPTFDANTECSIAYNAARYHINEDVTQVYAGDDMAMDHVCPEKKSFKALEKKLELTSK FT PLYPKQKPGDWADFCGWTITPYGIIKNPKKLDACLQLHTQLGDAYKVARSYALDAKYAY FT DLGDRIHEVLNADEMTSHFNVIRQLHKLHQQDVLVPPETTVATAVKSQPDAEGLWLRAL FT SFPDWTDRAQLLKRG" FT gene 4333..5034 FT /gene="TGBp1" FT CDS 4333..5034 FT /codon_start=1 FT /gene="TGBp1" FT /product="triple gene block 1" FT /db_xref="GOA:A9YZW4" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A9YZW4" FT /protein_id="ABY27303.1" FT /translation="MELAYLVRLLEHNKFERTNLPLSSPLVVHGIAGSGKSTILTTFHH FT HYPAHPIFSHSPTLLDPSNRIYQQCITTDSVPDGAIVDEYNYKALDYSRCLALFGDPLQ FT LPHSLQPHYYSSRTHRYGPKLTSLLNDLFHLSITSLAPVGSLDYANPFAVDPSGFTIAD FT EEVYNFVSQQVPGTLLPLDTVGLEYSSVSFYCSDLRSCVVLRPLSTFIALTRAKGNLTI FT FDFNARFSSTT" FT gene 5009..5347 FT /gene="TGBp2" FT CDS 5009..5347 FT /codon_start=1 FT /gene="TGBp2" FT /product="triple gene block 2" FT /db_xref="GOA:A9YZW5" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:A9YZW5" FT /protein_id="ABY27304.1" FT /translation="MPGLVPPPDHSKSLFVLAIGITVVSALFVLKSHTFPIAGDNIHRF FT PSGGQYKDGTKQINYCSPTHARYPKYPDYKWLAATAAVVIPLCLYISYHPGNNIRRICP FT CCNTYHHP" FT gene 5202..5477 FT /gene="TGBp3" FT CDS 5202..5477 FT /codon_start=1 FT /gene="TGBp3" FT /product="triple gene block 3" FT /db_xref="GOA:A9YZW6" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:A9YZW6" FT /protein_id="ABY27305.1" FT /translation="MLGTRNIQTTSGLPLPPPSSSLSAYIFPTILAIIFAVFALVAIHI FT TTPEPFCTIHIDGASITITNCPDPASILNKVAIGPWRGLSYHNNLK" FT gene 5480..6151 FT /gene="CP" FT CDS 5480..6151 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:A9YZW7" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:A9YZW7" FT /protein_id="ABY27306.1" FT /translation="MGEPTPTPAVTYSAADPTSAPKLADLAAIKYSPVTSSIATPEEIK FT AITQLWVNNLGLPADTVGTAAIDLARAYADVGASKSGTLLGLCLTKPDVRRAALAAQIF FT VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAAFDFFDAVDSTAALEP FT AEWQRRPTDRERAAHSIGKYGALARQRIQNGNLITNIAEVTKGHLGSTNTLYALPAPPT FT E" XX SQ Sequence 6226 BP; 1663 A; 1824 C; 1220 G; 1519 T; 0 other; ggaaaaccaa acctcacgtc taatccgcta tccgagcgaa atagcagccc cagcataggc 60 aatatcgcgc tccatggccc gagtacgtga cacccttgac aggctccgtg atccgtcggt 120 ccttacctca attaacgagg aagcccaccg acatatccgc cctgtccttg cctcggcact 180 cgtaaactgc ccttacgcgt tgaccgagga agaggccgac tgtctcgaaa acctcggcgt 240 gacagtcaat cccttcgcca tccaaacgca tacacatgct gcagccaaaa ctattgaaaa 300 ccgcatgttg gaaattgttg gcacccacct tcctaaagaa ccctccacct tcatattcct 360 taagcggagc aagcttcgtt acctacgacg cgccgccaac aacaaagaca tatttcaaaa 420 ccaacatatt gagcctaaag acctattgcg ttacgatgac gagtcttgtg aagtaatgcc 480 agaatgctcc acaagcacag cctacatcag cgatgctctc catttcttga gctacgctca 540 gcttgggaaa atattccagg attctcccaa gctgaaaatt ctgctggcaa ccctggtcct 600 ccccgtggaa gccctccata ggcacccatc tcttcatcct gccatctata ctttgaacta 660 ccatgaagat ggctttgaat atatactcgg taatcacgcc ggaggtgcct acttccacga 720 gtactccact ctacagtggt tgactctcgg gaaattaatt atcaacgatc ctttgaaagt 780 aaagaaaccc cttactctta ctgtacagct aatagaaagt ctaggggcta accatctttt 840 acttatcacc cgaggggatc ttcgcacacc caaactgcgg acattcgcta aagataccca 900 tgttctacta ccacaaatat tccatcccaa gggtatgaac gcgaacaaac cattgtccaa 960 acgtagagct atgcagttgt ggctctacgc caaatctgtt aaagaggtga gcgaacggga 1020 tctttatgct aaggtgaggc aattgatccc gacttctgag ttagaccttt ttgaccctgt 1080 ggaggtgacc cacttagtca attacttact gttcatcagt cacctttcct ccgtatcttc 1140 gtatgacgac atcttgtcgt ccaatatatt ccaacatttc accattccaa tcaagaacaa 1200 gatacgggaa ttggcccagc tattcaccgg agcggaccaa tttaatcaac tgctcaaagc 1260 tctcgactgg caaacatttt cgtactctat gccagtagag accatccata cacgtgcggc 1320 caattatcaa gtcgctaaaa cgcttcgtat gtgcagagac ctaccatacg atgaatatga 1380 tcgtgtaaag gatgtcctca gacagctccc tgacggagtg acgctgtttg aggaaaacga 1440 caagcaagat ccctcaagct ctgaagccga gaactctgag gatgactctg actccgttga 1500 cttcaacctt ccccccactc atgacttgcc cccaaacttt gaccctctaa acaagggcaa 1560 gtccattatc gttgatactg acaacccctc aacttctatg gcacctgccg tcatttttcc 1620 tgccggtatc aactcctcag cctccacaaa tattacattt ggaagcttca cacctgagac 1680 tgaggccacc ccccctcctc ccatggaaaa gttaccatgg gacctttgga ttcccctact 1740 ggaacaacat ggttttaaag gaaagagtaa gctgtacaag cccacgggtg aactaatctg 1800 ccccataact gaaatcaaaa cagttcccca ctgccccttt cccgataaag ccccggatgg 1860 ctgtgtgctt gcgcttaaat ctatcaagcg tttcgccaca aaaatgacta tgctcagttc 1920 tcgagcttcc gcctacactt ctgacattaa gaatagtagg actgggaagc tcctaccagc 1980 catgaacatg ccctggaaag cctctctcgc ctatgtcact caacacggtg atagagaaat 2040 tcctggcgtc gtgatccatg gtgccggtgg ctgtggcaaa tcttatgcca tccaaaaatg 2100 gttgagaagc tgctctgatc cttgtgcagc tactgtggta tgcccgactc tagaactacg 2160 taatgactgg ctcaataaga tcggaagcta cgaacaaacg aatatcaaaa ctttcgagaa 2220 agctttaatt cagccagtca acaacgtagt tatctttgat gactacacca agctaccccc 2280 tgggtacatc gagaccatgg tgtaccatca ccacaacctc gacctgatca tattaaccgg 2340 ggatcctatg cagagtgcct accatgaaac taacagggat gcctacatct ctttaatacc 2400 tgatgcctct gccattttca gggaatactg ggagttcaac atcaacgcca cccaccgtaa 2460 tgtggctgaa ctcgcttgcc tcctcggcgt ctattccgaa cgccaaggca aactcacagt 2520 ctccttcagc acagccccac tttctaaagg taaagtaccc attctggtac cctctagaat 2580 gaagcaagag gcttttgctg atgtcggcaa ccgttgcatg acttatgccg gttgccaagg 2640 tctcactgcc cctaaagtcc aaattttgat agacaaccac actgcgttct gctcggaaca 2700 aacattatac acttgtctat cacgagctgt gggccaaatc cacttcatta acactggtcc 2760 caactcgcag gctttctgga ccaaattgga atcaacgccg tacctaaaag ctttcctcga 2820 taattaccgt gaggaacaaa ctgaacggct aacatctacc gccccagagc ctgaagtccg 2880 tgagccagca gccccaaaaa cgcatatccc tgtcgaaaat acatctggct tacgtatttc 2940 tgcacttgat ttgccggaaa agcactctcg cgagattttc aacaaggcgc atggcttttc 3000 caatgctatt cagggggatg gcgtagcccc catgttccag catcaacagg caaaggacga 3060 aacccttttc aaggctacca tagacgctag actctctata acacatccta atgaaaacaa 3120 aagagagttt gccatgaaga aagacactgg ggacgtcctt ttcgtcaatt acaaagccat 3180 aatgaatcta cctcatgagc ctgtcccttt tgaacctcgt ctctggaaca tctgcaaagc 3240 tgaagtgcag aacacatacc tagccaaacc cattgcaaat cttatcaatg gtaccttaag 3300 gcaatcacct gattttccag ccaataaaat agccttattc ctgaaatcgc aatgggtaaa 3360 gaaaattgaa aaaattggag ccataccagt taaacctgga cagactattg catcatttat 3420 gcaagagact gttatgctgt atggcaccat ggcacgctac ctccgtaaga tgcagcaaag 3480 atatcaaccc gcacatatat tcatcaattg tgaaaagact ccggaggact tcaataaatt 3540 catacttgaa cactggtcac acaagcaagt tgcccacacc aacgatttta ctgcttttga 3600 ccagtcgcaa gatgctgcca tgctccaatt tgaagttatc aaagctaggt acttcaatat 3660 ccccgaggat gttatagaag gatacatcca aattaagctc actgctgaaa tcttcctcgg 3720 gacactttcc ataatgcgcc tatctggtga agggccaacc ttcgacgcca atactgaatg 3780 ctctattgcc tacaacgccg ccagatacca tattaatgaa gacgtcaccc aagtatacgc 3840 cggtgacgac atggctatgg accatgtgtg ccctgagaag aagagcttca aagctttgga 3900 aaagaaactg gaattaacct caaaacctct ctatccaaag caaaaacccg gagactgggc 3960 cgatttctgc ggctggacta taacgcctta tggcatcatt aagaatccta agaaacttga 4020 tgcatgcctg caattgcaca cccaactagg cgatgcctat aaagtcgcta ggtcatacgc 4080 actcgacgcc aaatatgctt atgatctggg cgatcgcatt catgaggttc tgaatgctga 4140 cgaaatgacc agccacttca atgttataag acagttgcac aaactgcacc aacaagatgt 4200 gctggtccca cctgagacta ccgtagccac agcggtaaag tctcaacctg acgcggaggg 4260 tctgtggctc cgtgcgctta gcttccctga ctggacggac cgcgcccaac ttttaaaacg 4320 gggttaattt tgatggagct agcgtaccta gttagattac tagagcacaa taaattcgag 4380 cgcaccaatc tgcccctttc ctcaccctta gttgtacacg gaatcgctgg cagtggaaaa 4440 tccaccatcc tcacaacttt ccatcaccat tacccggctc accctatctt ctcacacagt 4500 cccacattgc ttgaccctag caaccgcata taccaacagt gcatcactac tgattcggtg 4560 ccagacggtg ctatcgtaga cgagtacaat tacaaagcac tcgactactc tcgctgtcta 4620 gccctcttcg gtgatccact tcagcttcca cactcacttc aaccccacta ctactctagt 4680 cgcacccacc gctacggtcc caagctcact agcctactca acgacctctt ccacctttct 4740 atcacttctc ttgcccccgt cggcagcctt gattacgcta atccttttgc tgtcgacccc 4800 tctggattta ccattgctga cgaggaagtg tacaactttg tctcccagca ggttcccggc 4860 actttgttgc cgctcgatac tgtaggttta gaatattcta gtgttagctt ttactgcagt 4920 gatctcagaa gctgtgtcgt actaaggcca ctcagcacct tcatcgctct cacccgcgcc 4980 aagggcaacc tcaccatctt cgatttcaat gccaggttta gttccaccac ctgaccattc 5040 caagtcactc ttcgtccttg ctattggtat aactgtggtc tccgcattat ttgtgctaaa 5100 gtcccacact tttccaattg caggcgacaa tattcaccgc ttcccctccg gcggccaata 5160 taaagacggt actaagcaga taaactactg ttcacctact catgctaggt acccgaaata 5220 tccagactac aagtggcttg ccgctaccgc cgccgtcgtc atccctctct gcctatatat 5280 ttcctaccat cctggcaata atattcgccg tatttgccct tgttgcaata catatcacca 5340 cccctgagcc cttctgtacc atacacatag acggggcgtc tattactatc actaactgcc 5400 ccgatcctgc atctatatta aataaagtag ccataggccc ctggcgaggg ttaagttacc 5460 acaataattt gaaataatca tgggagagcc cactccaact ccagctgtca cttactccgc 5520 tgccgacccc acttccgcac ccaagttggc cgacctggct gccattaagt actcacctgt 5580 cacctcctcc atcgccaccc ccgaagaaat taaggccata acccaattgt gggttaacaa 5640 ccttggcctc cccgctgaca ccgtaggtac cgcggccatt gacctggccc gcgcctacgc 5700 tgacgtcggg gcgtccaaga gtggtaccct gctcggtctc tgccttacga aacctgatgt 5760 ccgtcgcgcc gctcttgccg cgcagatctt cgtggccaac gtcacccccc gccagttttg 5820 cgcttactac gcaaaagtgg tgtggaatct gatgctggcc actaacgatc cgcccgccaa 5880 ctgggccaag gctggtttcc aggaggatac ccggtttgcc gccttcgact tcttcgatgc 5940 cgttgattcc actgccgcgc tggagcctgc tgaatggcag cgccgcccta ctgaccgtga 6000 acgtgctgcg cactcgatag ggaagtacgg cgcccttgcc cgccagcgta tccaaaacgg 6060 caacctcatc accaacattg ccgaggtcac caagggccat cttggctcca ctaacactct 6120 ctatgctctg cctgcacccc ctactgaata acgccaaact taataaggcg tgtggttttc 6180 taaagtttgt ttccactact ggcataataa gtttagccag ataaat 6226 //