ID EU313202; SV 2; linear; genomic RNA; STD; VRL; 5814 BP. XX AC EU313202; XX DT 02-JAN-2008 (Rel. 94, Created) DT 25-JUN-2009 (Rel. 101, Last updated, Version 4) XX DE Potato leafroll virus isolate VIRUBRA 1/047, complete sequence. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5814 RX DOI; 10.1007/s11262-009-0374-x. RX PUBMED; 19504234. RA Plchova H., Cerovska N., Moravec T., Dedic P.; RT "Short communication: Molecular analysis of Potato leafroll virus isolates RT from the Czech Republic"; RL Virus Genes 39(1):153-155(2009). XX RN [2] RP 1-5814 RA Plchova H., Cerovska N., Moravec T., Dedic P.; RT ; RL Submitted (30-NOV-2007) to the INSDC. RL Virology, Institute of Experimental Botany, Czech Academy of Sciences, Na RL Karlovce 1a, Prague 6 160 00, Czech Republic XX RN [3] RC Sequence update by submitter RP 1-5814 RA Plchova H., Cerovska N., Moravec T., Dedic P.; RT ; RL Submitted (13-MAY-2008) to the INSDC. RL Virology, Institute of Experimental Botany, Czech Academy of Sciences, Na RL Karlovce 1a, Prague 6 160 00, Czech Republic XX DR MD5; 978ec6cf84f9a7895ed04508b23d19e1. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF01079; RF_site3. XX CC On May 13, 2008 this sequence version replaced gi:163955693. XX FH Key Location/Qualifiers FH FT source 1..5814 FT /organism="Potato leafroll virus" FT /isolate="VIRUBRA 1/047" FT /mol_type="genomic RNA" FT /country="Czech Republic" FT /db_xref="taxon:12045" FT 5'UTR 1..22 FT gene 23..766 FT /gene="P0" FT CDS 23..766 FT /codon_start=1 FT /gene="P0" FT /product="P0" FT /db_xref="GOA:B0FET8" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:B0FET8" FT /protein_id="ABY49845.2" FT /translation="MIVLTQSGTLHFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPTI FT VIKLDDPITAAAYRSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRDLMGNYQHLVRSILDACEVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSFLQKELQE" FT gene 156..2075 FT /gene="P1" FT CDS 156..2075 FT /codon_start=1 FT /gene="P1" FT /product="polyprotein" FT /note="proteinase" FT /db_xref="GOA:B0FET9" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:B0FET9" FT /protein_id="ABY49846.1" FT /translation="MNRFTAYAALFFMFSLCSTAKEAGFQHPAFNSRGTSTMSALSGDY FT SAAPTPLYKSWALPSSLNLTTQSPPLLTDRSYYELVQALISKMRLDCRTVGDMTWRHLS FT EMLFASWNSVKEVSLKAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK FT STRNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLTGKNWADDYDSDEDYGLEREAATNA FT PAEKTAQTNSAEKTAPSTSAEKTAPTNKPLNGQAAPSAKTNGNSDIPDVATSAPPMDKM FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKNKLNSSPPTSTQSTS FT GAPEKEAAPQASGSAGTSRATTTPAPEAKPSGGKNSAKFIPSWRRKQQDSAGQKPGLKL FT NSKA" FT gene 1480..1620 FT /gene="P8" FT CDS 1480..1620 FT /codon_start=1 FT /gene="P8" FT /product="replication-associated protein 1" FT /note="Rap1" FT /db_xref="UniProtKB/TrEMBL:B0FEU0" FT /protein_id="ABY49853.2" FT /translation="MTPMRITVWRERLQQMRPQRKLLKQTQQRRLLHQLQQRKLLQQTS FT L" FT gene <1493..3343 FT /gene="P2" FT CDS <1493..3343 FT /codon_start=1 FT /gene="P2" FT /product="putative RNA polymerase" FT /note="translated by ribosomal frameshift" FT /db_xref="GOA:B0FEU1" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B0FEU1" FT /protein_id="ABY49847.1" FT /translation="GLRSGERGCNKCARRENCSNKLSREDCSINFSRENCSNKQAFKWA FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAEA FT QTKEARKAWREEQAKQFTSYFNAIYKWGAREGGCPPGFRKCGHIPRYYHPRTRGETQWG FT QKLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV FT EDHKLLPVLTQLTFDRLQGMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS FT GAPSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH" FT gene 3541..5694 FT /gene="P5" FT CDS 3541..5694 FT /codon_start=1 FT /transl_except=(pos:4165..4167,aa:OTHER) FT /gene="P5" FT /product="P5" FT /note="readthrough protein; translated by amber stop codon FT suppression" FT /db_xref="GOA:B0FEU2" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FEU2" FT /protein_id="ABY49850.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKPSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP FT TPTPTPQKHERFIAYVGIPMLTIQARENDDQIILGSLGSQRMKYIEDENQNYTNVSSEY FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN FT VGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV FT GPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRLPREGHTHMAS FT PHEPEGKPVGNKPRDETPIQTQERQPDQTPSDDVSDAGSVNSGGSTESLQLEFGANSDS FT TYDATVDGTDWPRIPPPRHPPEPRVSGNSRTVTDFSPKADLLENWDAEHFDPGYSKEDV FT AAATIIAHGSIQDGRSMLEKREENVKNKTSSWKPPLSEAVSPAIAKLRSIRKSQPLEGG FT TLKKDVTDGVSSIGSGSLTGGTLKRKETIEERLLQTLTTEQRLWYENLKKTNPPAAIQW FT LYEYQPPPQVDRNIAKKPFQGRK" FT gene 3541..4167 FT /gene="P3" FT CDS 3541..4167 FT /codon_start=1 FT /gene="P3" FT /product="major capsid protein" FT /db_xref="GOA:B0FEU3" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B0FEU3" FT /protein_id="ABY49848.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKPSDTAGSFRVTIRVALQNPK" FT gene 3566..4036 FT /gene="P4" FT CDS 3566..4036 FT /codon_start=1 FT /gene="P4" FT /product="putative movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FEU4" FT /protein_id="ABY49849.1" FT /translation="MSMVVYNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDAEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QASYFSSSARPLPPPPVPSLMSWTPIAKYHPSSPTSTNSKLRRAAPKLIKRG" FT gene 5099..5287 FT /gene="P6" FT CDS 5099..5287 FT /codon_start=1 FT /gene="P6" FT /product="P6" FT /db_xref="UniProtKB/TrEMBL:B0FEU5" FT /protein_id="ABY49851.1" FT /translation="MLQSMVQTGPEFLHQGTHLNLEFPAIQELLLTFLRKPIYWRIGMP FT NTSTLVIPKKMSLLLLL" FT gene 5317..5694 FT /gene="P7" FT CDS 5317..5694 FT /codon_start=1 FT /gene="P7" FT /product="P7" FT /db_xref="GOA:B0FEU6" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FEU6" FT /protein_id="ABY49852.1" FT /translation="MLEKREENVKNKTSSWKPPLSEAVSPAIAKLRSIRKSQPLEGGTL FT KKDVTDGVSSIGSGSLTGGTLKRKETIEERLLQTLTTEQRLWYENLKKTNPPAAIQWLY FT EYQPPPQVDRNIAKKPFQGRK" FT 3'UTR 5695..>5814 XX SQ Sequence 5814 BP; 1609 A; 1471 C; 1428 G; 1306 T; 0 other; ctcattgcaa acgttatagc atatgattgt attgacccag tctggaacct tgcattttga 60 ccaaagattt aaactctcaa agtttctctt cgttgtcatt gcaacaggct ttcctcttct 120 cttgcagcaa gcgagcttaa tttacggcta caatcatgaa cagatttacc gcatatgccg 180 ctcttttctt tatgttctcc ctttgctcaa ctgcaaaaga ggcaggattt caacatccgg 240 ccttcaactc ccgaggcacc tccactatga gtgccttgag tggggattac tctgcggcac 300 ccaccccgct atacaaatcg tgggccctac catcgtcatt aaacttgacg acccaatcac 360 cgccgctgct tacagatcgg agctactacg agttagttca agctcttata tccaaaatgc 420 ggctggattg tcgaacggtt ggggacatga catggaggca tttgtcagaa atgctatttg 480 cctcctggaa ctccgtgaaa gaagtatccc tcaaagcggc ctccgtgacc ttatgggcaa 540 ttatcagcat ttggttcggt ctatattgga cgcttgcgag gttgatcact ttgttcctct 600 ggactttcag catagaagcc ttatgcttaa ttttgctcgg ttgtataacc agcttgattt 660 acaagggcgc gctaagtctt tcagagcact taccggtttt cctgtttatg tcccctctga 720 agattatttg gagggcagct ttctccaaaa ggaattacaa gaatgagagg gctgtggaag 780 gatacaaagg gttttcggtc ccacagaaac cgccaaagtc tgccgtaatt gaactacaac 840 atgaaaacgg cagccatctc gggtacgcga actgcattcg cttgtacagt ggagagaacg 900 ccttggtgac agctgaacac tgtctagaag gcgctttcgc aacgtcgttg aaaactggaa 960 acaggattcc gatgtcgact ttctttccca tttttaaaag tacccgtaat gatatctcca 1020 tactagtagg tccacccaac tgggaaggtc tactatcagt caaaggagct catttcatta 1080 cagctgataa aatcggcaaa ggtcctgcct ctttctacac tcttgagaaa ggggagtgga 1140 tgtgccatag tgccaccata gatggagccc atcaccagtt cgtgtctgtt ttatgcaaca 1200 ctggacccgg atattccgga acagggtttt ggtcttcaaa gaatctgctt ggtgtgctta 1260 aaggcttccc actggaagag gagtgtaact acaatgttat gtctgttata ccctcgatcc 1320 caggaatcac ttccccaaat tatgtgtttg agtcgaccgc cgtaaaaggc cgcgtcttct 1380 cggatgaggc tgtgaaagag ctggagcggg aagcatccga agccgtcaag aagcttgcca 1440 gatttaaatc acttaccggc aagaactggg ctgatgatta tgactccgat gaggattacg 1500 gtctggagag agaggctgca acaaatgcgc ccgcagagaa aactgctcaa acaaactcag 1560 cagagaagac tgctccatca acttcagcag agaaaactgc tccaacaaac aagcctttaa 1620 atgggcaagc ggcaccgtcc gccaaaacaa acggcaactc cgacatcccc gacgtcgcta 1680 caagcgcacc accaatggac aaaatggtcg aacagatcat cacagctatg gtggggagaa 1740 tcaatctctc ggagatagag gagaagatag tgagcagggt gtctcagaaa gccctgcaga 1800 agcccaaaca aaagaagcgc ggaaggcgtg gagggaagaa caagctaaac agttcacctc 1860 ctacttcaac gcaatctaca agtggggcgc ccgagaagga ggctgccccc caggcttcag 1920 gaagtgcggg cacatcccgc gctactacca cccccgcacc agaggcgaaa cccagtgggg 1980 gcaaaaactc tgccaagttc atcccgagct ggcggagaaa acagcaggat tcggctggcc 2040 aaaagccggg tctgaagctg aactccaaag cctgaatcta caggctgcca ggtggctcca 2100 acgcgcggag tcggccacta tccctggcgc agaagcaaga aagcgcgtga ttgagaaaac 2160 agtggaggca tacagaaatt gtgtaactaa cgccccactg tgctccctta aatccaaact 2220 ggattgggct ggctttcaac aagatatccg tgaagcagtc cagtcccttg agctagacgc 2280 tggtgtaggc attccctata tcgcgtacgg cctccccaca caccgaggat gggttgagga 2340 ccataagctt ctcccagtgc tcactcagct gaccttcgac cgactacagg ggatgtcgga 2400 ggccagcttc gaggatatga gcgcagaaga gctggttcaa gaagggctct gtgatcctat 2460 cagactattt gtcaaaggag agccccacaa acagagcaaa ctcgatgaag gccgctaccg 2520 cctcatcatg tctgtttcct tggtggatca actggtagcc cgggttctgt tccaaaatca 2580 gaacaaaagg gaaatttccc tgtggaggtc tgtgccttcc aaacccggtt ttggcctttc 2640 aaccgacact caaactgctg aattcttgga gtgtcttcaa aaggtgtctg gagcgccatc 2700 tgtggaagaa ctgtgtgcaa atcacaagga gtacacgcgc ccaactgact gttccggttt 2760 cgactggtca gttgcgtatt ggatgctgga ggatgatatg gaggtgagaa atcgcctgac 2820 atttaataac acccagctca ccaagcgcct tcgggctgcc tggttgaagt gcataggaaa 2880 ctccgtcctg tgcctgtccg atggcacttt acttgcccaa actgttcccg gtgtacaaaa 2940 gagcggaagt tacaatacaa gttcctccaa ctctagaatc cgggttatgg ctgcctatca 3000 ctgtggcgcc gactgggcga tggccatggg ggatgatgct ctcgaagccc ccaactccga 3060 cctagaggag tataaaacac taggtttcaa agtcgaggta ggtcgagaac tcgaattctg 3120 ttcacacatc ttcagaaatc cgaccctcgc cgttccggtc aacaccaaca aaatgcttta 3180 caagttgatc catggttata atccggaatg tggcaatcca gaagtgattc aaaactatct 3240 ggctgcagtg ttctctgtgc tgcaggagct ccgacacgat cgtgagctcg ttgccaagct 3300 ccaccagtgg ttggttccga gtgccaccac aaaagaacac tgaaggagct cactaaaact 3360 agccaagcat acgcgagttg caagcattgg aagttcaagc ctcgttacat caaccggaca 3420 aaatagatta taaattctta gcgggatttg ctttgggatt ctcatccgca atcccatttt 3480 cagtagccgg tttatatttt gtttacctaa agatttcctc ccacgtgcga tcaatagtta 3540 atgagtacgg tcgtggttaa aggaaatgtc aatggtggtg tacaacaacc aagaaggcga 3600 agaaggcaat cccttcgcag gcgcgctaac agagttcagc cagtggttat ggtcacggcc 3660 cctgggcaac ccaggcgccg aagacgcaga agaggaggca atcgccgctc aagaagaact 3720 ggagttcccc gaggacgagg ctcaagcgag acattcgtgt ttacaaagga caacctcatg 3780 ggcaactccc aaggaagttt caccttcggg ccgagtctat cagactgtcc ggcattcaag 3840 gatggaatac tcaaggccta ccatgagtat aagatcacaa gcatcttact tcagttcgtc 3900 agcgaggcct cttccacctc ctccggttcc atcgcttatg agttggaccc ccattgcaaa 3960 gtatcatccc tccagtccta cgtcaacaaa ttccaaatta cgaagggcgg cgccaaaact 4020 tatcaagcgc ggatgataaa cggggtagaa tggcacgatt cttctgagga tcagtgccgg 4080 atactgtgga agggaaatgg aaaaccttca gataccgcag gatccttcag agtcaccatc 4140 agggtggctt tgcaaaaccc caaataggta gactccggat cagagcctgg tccaagccca 4200 caaccaacac ccactccaac tccccagaag cacgagcgat ttattgctta cgttggcata 4260 cctatgctaa ccattcaggc cagggagaac gacgaccaaa tcatattggg ttctttaggg 4320 agccaaagga tgaaatatat agaggacgag aaccagaact atacaaatgt tagttctgag 4380 tattactctc aatcgagtat gcaagccgtc cctatgtatt acttcaatgt cccgaaaggg 4440 caatggtcag tcgacatcag ttgcgaaggg tatcaaccca ctagcagcac ctcggatcca 4500 aaccggggta ggagtgacgg gatgatcgcg tattcaaacg cggattccga ttattggaat 4560 gttggtgaag cggatggtgt caaaatttcg aagctacgca acgataacac ctaccgccaa 4620 ggtcacccag aacttgaaat taactcgtgt cattttcgcg agggccaact ccttgaacgg 4680 gacgctacaa ttagcttcca cgttgaagcg cctactgatg ggcgattctt tctcgttggt 4740 cccgctatcc agaaaaccgc aaagtataac tatactatct catacggtga ctggacggac 4800 cgagacatgg aactggggct gatcaccgtg gtgcttgatg aacatttaga aggcactggt 4860 tcggctaaca gagtgcggcg gctcccacgg gagggccaca cccatatggc ttcgccgcac 4920 gaaccggaag gaaaaccggt tggaaataaa ccaagggacg aaaccccgat acaaacgcag 4980 gaaagacaac ctgatcaaac tccgtctgac gacgtatccg atgctggttc ggtaaacagc 5040 ggcggctcaa ctgagtcgct gcaattggag ttcggggcaa actcagatag tacctacgat 5100 gctacagtcg atggtacaga ctggcccaga attcctccac caaggcaccc acctgaacct 5160 agagtttccg gcaattcaag aactgttact gacttttctc cgaaagccga tctattggag 5220 aattgggatg ccgaacactt cgaccctggt tattccaaag aagatgtcgc tgctgctact 5280 attatagcgc acggcagtat tcaagatggg cgaagtatgt tggagaagag agaggaaaat 5340 gtcaagaaca aaacctcctc ctggaagccc ccgttatctg aagcggtgag cccagccata 5400 gccaaattgc gctcgattcg caaatcccaa cccctcgagg gagggaccct taagaaagac 5460 gtcactgatg gtgtctcatc tattggcagt ggttctttaa caggtggcac gcttaagagg 5520 aaggaaacta ttgaagagcg tttactgcag accttaacaa ctgaacaaag gctgtggtac 5580 gagaatttga agaaaactaa ccctccagct gctatccaat ggctgtatga atatcagcca 5640 cctccccaag tagatagaaa catagctaaa aagccgttcc aagggaggaa atgagtcgac 5700 tcacgactta aaactgagtg tccgccggac gttaagcgga acgaaagccg aaaggtgatt 5760 aggctctcaa cgcctgctag agaccgtcga aagacgcgac tgtgtagcca ggat 5814 //