Dbfetch
ID EU309045; SV 1; circular; genomic DNA; STD; VRL; 2740 BP. XX AC EU309045; XX DT 25-DEC-2007 (Rel. 94, Created) DT 25-DEC-2007 (Rel. 94, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus-Chilli pepper isolate Bahraich segment DNA DE A, complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus-Chilli pepper OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2740 RA Khan M.S., Raj S.K., Snehi S.K.; RT "Tomato leaf curl New Delhi virus causing leaf curl disease in chilli RT peppers in U.P., India"; RL Unpublished. XX RN [2] RP 1-2740 RA Khan M.S., Raj S.K., Snehi S.K.; RT ; RL Submitted (29-NOV-2007) to the INSDC. RL Plant Molecular Virology, National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U.P. 226 001, India XX DR MD5; 49182073d22cacd06db940eace31cd3a. DR EuropePMC; PMC5510628; 28770240. XX FH Key Location/Qualifiers FH FT source 1..2740 FT /organism="Tomato leaf curl New Delhi virus-Chilli pepper" FT /segment="DNA A" FT /host="chilli" FT /isolate="Bahraich" FT /mol_type="genomic DNA" FT /country="India" FT /db_xref="taxon:311379" FT CDS 120..458 FT /codon_start=1 FT /product="AV2" FT /note="precoat protein" FT /db_xref="GOA:A9YX70" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A9YX70" FT /protein_id="ABY40418.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIESTPSSQLRQPLWSSCSCPHCPRHKSKGLDKQADEQ FT KTQNVQNV" FT CDS 280..1050 FT /codon_start=1 FT /product="AV1" FT /note="coat protein" FT /db_xref="GOA:A9YX71" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A9YX71" FT /protein_id="ABY40419.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPVVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(310..795) FT /codon_start=1 FT /product="AC5" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:A9YX72" FT /protein_id="ABY40424.1" FT /translation="MHVLHRCCARFIVKHVKNFPEILGGSCRTTVTDQKEHNTVSMVFR FT LDVFIHPYLPQHIHRFHTKSLSYAMCESSSSGNITNAHDFANMRDIVPGFEGLHLARAF FT TSPWHDGTSIHSVHSGFSVHRPVCPGLCFCDAGNGDNCTSSIGAVEVETTAYFRCGR" FT CDS complement(1047..1457) FT /codon_start=1 FT /product="AC3" FT /db_xref="GOA:A9YX73" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A9YX73" FT /protein_id="ABY40420.1" FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFQIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI FT YNVIRAVYHVLDNVLEQTIDVWTSYDIKLDIY" FT CDS complement(1177..1596) FT /codon_start=1 FT /product="AC2" FT /db_xref="GOA:A9YX74" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A9YX74" FT /protein_id="ABY40421.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYVSIN FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFETRQQALPNTARHNQDSNTIQPQP FT AESPGASQVFSNFPNLDGLTPSDWDFLESLQNPGP" FT CDS complement(1499..2584) FT /codon_start=1 FT /product="AC1" FT /note="rep protein" FT /db_xref="GOA:A9YX75" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A9YX75" FT /protein_id="ABY40422.1" FT /translation="MPPPSRFRINAKNYFLTYPKCSLTKEEALSQLQTLETPTSKKFIK FT ICRELHEDGTPHIHVLIQFEGKYQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI FT DKEGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDAMRVLKELAPKDYVLQFH FT NLITNLDRIFQPRSEVYVSPFSISSFDRVPPELVDWVTSNVVCAAARPFRPISVVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWALKNAVFITLEEPL FT YSGRENIAPPEEEEEHSQEAS" FT CDS complement(2251..2427) FT /codon_start=1 FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A9YX76" FT /protein_id="ABY40423.1" FT /translation="MGLRISMFSSNSKENTNAKITDSSTWCPQVGQHISIRTFRELNQH FT RTSKHTSTKRETF" XX SQ Sequence 2740 BP; 746 A; 597 C; 609 G; 788 T; 0 other; accgaatggc cgcgcaaatt tttatgtggg accccgacca atgaaattcg acctacatga 60 cttctttaat gcatggggtc ctttaaatag acttgctcac caagtttgga tccacaaaca 120 tgtgggatcc attgttgcac gaatttccag aaagcgttca tggtctaagg tgcatgctag 180 ctgtaaaata tctccaagag atagaaaaga actactcccc agacacagtc ggctacgatc 240 ttgtccgaga tctcattctt gttctccgag caaagaacta tggcgaagcg accagcagat 300 atcatcattt caacgcccgc atcgaaagta cgccgtcgtc tcaacttcga cagcccctat 360 ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gacaaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgtcgt gccaagggga 480 tgtgaaggcc cttgcaaggt gcagtccttc gaatccaggc acgatgtctc tcatattggc 540 aaagtcatgt gcgttagtga tgttacccga ggaactggac tcacacatcg cgtaggaaag 600 cgattttgtg tgaaatctgt gtatgtgctg gggaagatat ggatggatga aaacatcaag 660 acgaaaaacc atactaacag tgttatgttc tttttggtcc gtgaccgtcg tcctacagga 720 tccccccaag atttcgggga agtttttaac atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gtgttaagga agtggcatgc gactgtgacg 840 ggaggaacat atgcatctag ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgtcgttt acaatcaaca agaggccggc aagtatgaga atcatactga aaacgcatta 960 atgttgtaca tggcctgtac tcacgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctatttct atgattcggt cacaaattaa taaatatcaa gctttatatc ataagacgtc 1080 catacatcaa tcgtctgttc caatacatta tccaatacat gataaactgc tcttattaca 1140 ttatatattc ctatgacacc taacatatcc aggtacttaa ggacctgggt tttgaagact 1200 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga tttggaaagt tagaaaacac 1260 ttgtgaagcc ccagggcttt ccgcaggttg tggttgaatt gtatttgaat cttgattatg 1320 tcgtgctgtg ttaggaaggg cctgctgtcg tgtttcaaaa ttttgaaata caggggattt 1380 cgaatttccc aggtatatac gccactctct gctcgatccg cagtgatgta ttcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tacgtaatac gaacaaccac acggaagatc 1500 aactcgcctc ctgcgaatgc tcttcttctt cttctggggg agcgatgttt tcgcgaccgg 1560 aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt gagtgcccac tgcttcagtg 1620 ctgcattctt ctcttcgtcc agatattcct tatagctgct gttcggacct ttattgcaca 1680 ggaagatagt gggaattcca cctttaatca tgactggctt tccgtacttc gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaagtgctt tagatagtgg ggatcaacgt 1800 cgtcgatgac gttgtaccaa gcatcattgc tgtacacctt tgggctcaga tctagatgtc 1860 cacacaagta attgtgtggt cctaagcaac gagcccacat tgttttgccc gtcctactat 1920 ccccctctat gactacactt attggtctaa aaggccgcgc agcggcacac acaacatttg 1980 acgtgaccca atcgacgagt tctggcggaa ctctgtcgaa ggaagaaatt gaaaatggag 2040 agacataaac ctcagaacga ggttgaaaaa tgcgatctaa atttgtaatt aaattgtgaa 2100 actgcagaac ataatccttt ggtgcaagtt cttttaatac tctcatcgca tcatctttat 2160 ttcctgtatt aatcgcttga gcatatgcat cgttcgctgt ctgttgacca ccacgagcag 2220 atcgtccatc gatctggaaa acaccccatt ctagaacgtc tccctctttg tcgatgtatg 2280 ctttgacgtc cgatgctgat ttagctccct gaatgttcgg atggaaatgt gctgaccgac 2340 ttggggacac caagtcgaag aatctgttat ttttgcattg gtattttcct tcgaattgga 2400 tgagaacatg gatatgcgga gtcccatctt cgtgaagctc tcgacagatc ttgatgaatt 2460 tcttcgaagt tggggtttct agggtttgta attgggaaag tgcctcttcc tttgtaagag 2520 agcacttagg atacgtgagg aaatagtttt ttgcatttat tctaaaacga cttggcggag 2580 gcataaaact tgtcgtttcg atccggtgtc tctcaacttt ctctatgtaa ttggtgtctg 2640 gagtcccata tataggtaag acaccatatg gcagaattgt aattttgaaa agaaaattac 2700 tttaattcaa aatccctaaa gcggccattc gtataatatt 2740 //