ID EU284745; SV 1; linear; genomic RNA; STD; VRL; 8594 BP. XX AC EU284745; XX DT 21-DEC-2007 (Rel. 94, Created) DT 01-OCT-2008 (Rel. 97, Last updated, Version 2) XX DE Tomato chlorosis virus isolate Gr-535 segment RNA1, complete sequence. XX KW . XX OS Tomato chlorosis virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RP 1-8594 RX DOI; 10.1111/j.1365-3059.2008.01845.x. RX AGRICOLA; IND44103505. RA Kataya A.R.A., Stavridou E., Farhan K., Livieratos I.C.; RT "Nucleotide sequence analysis and detection of a Greek isolate of Tomato RT chlorosis virus"; RL Plant Pathol. 57(5):819-824(2008). XX RN [2] RP 1-8594 RA Kataya A.R.A., Stavridou E., Farhan K., Livieratos I.C.; RT ; RL Submitted (15-NOV-2007) to the INSDC. RL Sustainable Agriculture, Mediterranean Agronomic Institute of Chania, RL Alsylio Agrokepion, Chania, Crete 73100, Greece XX DR MD5; e62f36f6c246e5fde8f05e5dd6cb5f8d. XX FH Key Location/Qualifiers FH FT source 1..8594 FT /organism="Tomato chlorosis virus" FT /segment="RNA1" FT /isolate="Gr-535" FT /mol_type="genomic RNA" FT /country="Greece" FT /db_xref="taxon:67754" FT 5'UTR 1..301 FT CDS 302..6139 FT /codon_start=1 FT /product="polyprotein" FT /note="contains papain protease, methyltransferase, and FT helicase" FT /db_xref="GOA:A9YRU8" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A9YRU8" FT /protein_id="ABX89248.1" FT /translation="MDSQQNLVSFNVDFTEKKIKDTFRVVKRHISNKYNKSFKKRLFLC FT SCDLNVSIAANSVSTAQGCSVRARIKTRMNVLRRLCGIPHCNFNKLPVSVYRKFGHDFH FT RINSAIDRYLESSVGSTGGKSLEEIERIDGYTDHGDGYRVRLYSDVNICDVFVRFNADV FT ATGHDLKIRLQRQKNRITGQVRTVVHAAKNGFGLDFSLWCDSFLLTDSKTSGQKMVMDM FT IAAVAMKVPDVLPGFDRLYSRVFSKNLEQIRSAFIRECKKYMQTSCDKANASHREKVTL FT KVKPSVAVKNVPDVTHKVGPDGAESFVVTYSDGKQRIIVNDDGAVRNLFNATLTNGKYF FT IHPKAMIPDKSFFSSKTTEYCWLNALAAVNKKIPDFVVPYPCLRMRVLYNCGLGSVVEK FT HCKFVKAGLYHFDLRYCAPGKPINLNGYVGSKVDTDIPSLGKNINVIFDDLIGHYVQGT FT NLRSDNLLSSNIVNRLSDRINTMFSKPKDPSIATSLTASEKRKVIDMFPELCLNFTDTS FT YSSHPIATAIRCCENFIMAKRCGNEDFIDAGGDVVHYMLESVKNVHVCTPIVDTKDAHR FT HISRSAMLDTMWGLKDKVSFCEHKTETCTVEKTNIVAVEVYDMTLKQMAQALLSHKAKR FT FDFSLIIPPEVCDPVCDVYQLNNSLHVTNNGDKIEYAYGDFGESYFHDRENLRDILRTQ FT MFVYNGVVFKKSLECSRDNLHFFSVVPCLGIKPGVYTLSTHYKKSESDKIEMTIPVREK FT LGQVVDKRTSVDRALTYSLIEYVMNTAARVDEKSSDYLVSQYRAKKSMTIKGNKVVPND FT CDLPVELVPGYLAIILAEGLRLREKIQYFAKISYHRHYSPSILKIFSLLIQEFVTFAKA FT KCYDGFVWFLRKCLSDKVLDKVIFGERRIHDCQFIMRFKQEVTVVGESGKHSILGDSIH FT AFTEASERAETGLADFVDGRPDLFKPDDYEKLYDLVHSGGGNAGFFSKTANYYSPFSLY FT YSIYNFFSNFISSASRISLYTNFFISVIDWMRYHSISCFEYFKEVVKVIVCATMGKLKS FT GMQSLWDKLKRCAKEMKGLVNSDRLSLEKKLDDIFSADDEIAEALSSDVQSIVTEAVLS FT EQLISSGGGGVISRPMKCVREMYDHSRRSLRWFCTWFLQQFKLYKRNILYIPEFLRESF FT DEIFEALKLKILSNDFIEMTIQGMSFFVVNLTTSLFFGKIGLGLSTVSTVFYLSIKYTG FT LERRFLGTSFVNEHLSSAITTGGFSHPYMIPVRSLVMKSCQNWMKQKLLRYETVSPIVT FT DLIAKDVLNASVYQYVTPYRVRMGLYFSILLALLKPTFAVVLLVCILLVAEHAKFYRTV FT VVQANVHLSFASRLRRLNPTSKARAIKQLLVSKFDRKRFSKDNSDDKFCDTFEDFDCGP FT TEFGINSKDLVGAGEASTSEQPVVELDYSGNEIKGKSWGDVTDDSISEPDIVDRPDGLV FT FSSLEITNQREKFLCDSSLLLSDALLQYPVVDVTTNVLTGDNIVDTFSEFFFLEKKKLH FT VELGKINNVVDFYKSSLTGKNAFYNKVWSLRNKFDDSSLYVSENSKVWYKLKQGEKGHV FT QLEGVCKYTLDNKLVPFTYFYDDFQVTSDELMGMFSNRRCLALQSITPRESGFDLNSML FT ENVTFFNKPPGAGKTTTIVRNMVRDIKSNVRCLALTCTNAGKKEIIHKLRKEGVNNAFS FT LVMTYDSFLINGGKMDTDMVYCDEIFMIHAGLWVALLSMLQFKKMECYGDKNQIPFINR FT VPNTLCQYSQKIFFLFRMIHDNVSYRCPPDVCYILSNLRDAAGNLLYPNGVKAVGPNSN FT LLRSMFVVPLRSAEEVPYSPDVKMIAFTKPEKDDIMRHGRTADGKTNSAQTVNEVQGGT FT FPKVELYRLRQYDNPIYNDVNQFVVSISRHTEVMKYRVLSTKMHDTVGQHISSLDKVAD FT HIIRECAFKQQV" FT CDS <6141..7655 FT /codon_start=1 FT /product="RNA dependent RNA polymerase" FT /note="expressed by +1 frameshift" FT /db_xref="GOA:A9YRU9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:A9YRU9" FT /protein_id="ABX89249.1" FT /translation="TYRLTIEGCYIPDTFSRPASSHLMAVNDFMSVVNPGLAWMQFLHR FT TILFEYGDFDMPPVEKMVLDFSKYKPYVAGEFVVSKILGKGERTRPDSMKQGIISLSHR FT NFSAPRINERLDVYKTAERLCQNLVRSFDFSRLYENYDVILPDMFKIDDWLQDRDGSKF FT GRIKRDMDHKLLVEQFESLKFMIKGEMKPKMDMSSYTAYNPPANIIYYNHLVSMYYSPL FT FLEVFDRISYCLSKKIVMYSGMNLETLGTLIGSKLQKPLTSYHTLEIDFSKFDKSQGIL FT FKVYEGMIYRFFKFSEDYYTNIEATEYFIKYRGRCGISGELGAQRRTGSPNTWLSNTLV FT TMGIILSVYDLDDIDLFLVSGDDSLIFSSKPLKNKTDEINRDFGFEAKMIENSVPYFCS FT KYIISDRGKIRVVPDPVRFFEKLSVPIRVQDFMSDTLMREKFRSYKDLMKDFDYDTTCV FT LVDALVCYRYNLPPMCSYAALCYIHCLCANFTTFRRVYESDLTVVI" FT CDS 7662..8243 FT /codon_start=1 FT /product="P22" FT /db_xref="UniProtKB/TrEMBL:A9YRV0" FT /protein_id="ABX89250.1" FT /translation="MDLTGCLRKLRQCDRLLERRGNAVSEVHLRAILIDLDECSECLML FT CEQEYIRDTDCLMSFLLALKHYEIKFHMDMLNMIYDFKLKTSQLIQDVFRIKVIIRVYL FT ELCEIDPLLAMTEACQDILESGILNIGFISSALGHEPNILITILSMVDFIVVIDDRPLV FT FIPSKIRFVGDKLGSGHFRWFDKFFFGSDI" FT CDS 8263..8418 FT /codon_start=1 FT /product="P5" FT /db_xref="GOA:Q4KRZ2" FT /db_xref="UniProtKB/TrEMBL:Q4KRZ2" FT /protein_id="ABX89251.1" FT /translation="MGDRFACDSLDSIARDIHSLYILFFYTFLVGVLLTFIMSCVRGVI FT EIYRVN" FT 3'UTR 8419..8594 XX SQ Sequence 8594 BP; 2343 A; 1468 C; 2024 G; 2759 T; 0 other; gaaatagtat tcgtgtgatt acacaaagta ctaattaact tagctttaag gctttctggt 60 gtgttgccag tttgcctgcc cggttgccac tgtgttcagt gtcgacctta ttataccagc 120 attcaccgcc atagcattac tagaaacagc acgacgagta cactaaacta atctgccttg 180 ctttactttg cgttctcctt ttcgtctcgg agagcgcgcc ccttgcccgc cgttgtgggt 240 tgttagtgtt caccatataa ccccctcttg ttgtgattta gtagtttgta ttttagctat 300 tatggattct cagcaaaacc tagtttcgtt taacgtagat tttactgaaa agaaaataaa 360 agatacgttt agagtagtta agaggcatat tagtaataaa tataataaat cctttaagaa 420 gagactgttt ttgtgcagtt gcgatttaaa tgtctcaatt gccgcaaact cagtgtcgac 480 tgctcaggga tgcagtgtga gggctcggat aaaaactcgc atgaacgtac ttagacggtt 540 atgtgggata ccacattgca atttcaacaa attaccagtt tctgtataca gaaaattcgg 600 tcacgatttc catagaataa attctgcaat agaccggtat ttggaaagtt ctgtggggtc 660 aacaggtgga aaatctctcg aggaaatcga gagaatagat ggttacacgg accatggcga 720 tggttatcgt gtaagacttt actctgacgt caacatttgt gacgtgtttg taaggttcaa 780 tgctgatgtt gccactggtc acgatttgaa gatcaggctc cagagacaga agaatagaat 840 taccggccaa gttaggacgg tcgttcatgc tgcgaagaat ggttttgggc ttgatttttc 900 tctgtggtgt gatagtttcc ttctcacaga cagtaaaact tccggccaga agatggttat 960 ggatatgata gcggctgttg ctatgaaggt tccggatgtt ttgcctggat ttgaccgttt 1020 gtactccaga gtttttagta agaaccttga gcagatcaga tccgctttta tcagagagtg 1080 caagaagtac atgcaaactt cttgtgataa ggctaatgca agtcaccgcg agaaagtgac 1140 actcaaagtg aagccgtcag tcgcggtgaa gaacgtgcca gatgtgaccc ataaggtcgg 1200 acccgacggt gcagaatcgt tcgtggtcac ttattctgat gggaaacaac gcataattgt 1260 gaatgatgac ggtgccgtta ggaatttgtt taacgctact ctcaccaacg gtaaatattt 1320 cattcacccg aaggctatga tcccagataa aagctttttc tcgtccaaaa caactgagta 1380 ttgttggttg aatgccctcg ctgccgtcaa taagaaaata ccagatttcg ttgtacctta 1440 cccatgtctt aggatgcggg tgttgtacaa ctgtggtttg ggcagtgtag ttgagaagca 1500 ttgtaagttt gtaaaagccg gtttatacca ttttgatctt aggtactgtg cgcctggaaa 1560 acccatcaat ctcaatggtt atgttggttc caaggttgat actgatatac cgtccctagg 1620 taagaacata aatgtcatct ttgatgattt gatcggacat tatgttcaag gtactaattt 1680 gagatctgac aatctgttat ctagcaacat cgttaataga ttgtctgaca gaataaacac 1740 aatgtttagc aaaccgaaag atccctcgat agcgacttcg ctcaccgcat cagagaaacg 1800 taaagtgatc gatatgtttc ctgagttgtg tttgaatttc accgacacat cttactcctc 1860 tcatcctatt gccactgcaa ttaggtgttg tgagaacttc atcatggcca aacgatgtgg 1920 taatgaggat tttattgatg ctggtggtga tgttgtgcac tatatgttag agagtgtgaa 1980 aaacgttcat gtttgcacac caatagttga taccaaggat gcccatagac acatttcgag 2040 gagtgctatg ctcgatacca tgtggggact taaggacaag gtgtctttct gtgagcataa 2100 aactgaaact tgcacagtgg agaaaactaa tattgtagcg gtggaggttt atgatatgac 2160 tctgaaacaa atggcacaag ctcttctgtc acataaggcc aaaaggtttg acttcagcct 2220 tataatacca cctgaggtgt gcgacccggt gtgtgatgtg taccagctta acaatagcct 2280 acacgttacc aataacggtg acaagattga gtacgcatac ggcgactttg gtgagagtta 2340 ttttcatgat agagagaact tgagagacat tctacgaact caaatgttcg tttataatgg 2400 agttgttttc aagaagtcat tagagtgttc tcgtgacaat ctgcatttct tctctgtggt 2460 tccttgcttg ggcattaaac cgggtgtcta cactttgtca actcattata aaaaatctga 2520 gtctgataag attgagatga caatacccgt tcgggagaaa ctcggacaag tcgtcgacaa 2580 gcggacgagt gttgataggg cacttactta cagcttgata gaatatgtca tgaacacagc 2640 ggctagggtg gatgagaaat cctctgacta tttagtttct cagtacaggg ccaagaagag 2700 tatgaccata aaaggtaata aagtggtgcc taatgactgc gatttacctg tggagttggt 2760 gccaggttac ctagctatta ttttggccga gggattgagg cttagggaga agattcaata 2820 ctttgcaaaa attagttatc atcgtcacta cagcccgtcg attttgaaga tattttccct 2880 cttgatacaa gagtttgtaa cgttcgctaa ggctaagtgt tacgatgggt ttgtttggtt 2940 ccttcgcaag tgtctgtctg ataaggtact tgataaggtg atatttggtg agaggcgtat 3000 ccatgactgc cagttcataa tgcggttcaa gcaagaggtc actgtggtcg gcgagagtgg 3060 taagcattcg atcctcggtg attctatcca cgccttcact gaagcaagtg agagagctga 3120 aactggactg gccgattttg tggacggtag accggatttg ttcaagccag atgactatga 3180 gaagttgtat gatctagttc attctggtgg tggaaacgca gggtttttta gtaagacggc 3240 taattattac tctccgtttt ctttgtatta ttctatttac aattttttct cgaattttat 3300 ttcttcagct tctcgaattt ccttgtatac caatttcttt atttcagtta tagattggat 3360 gcgttatcac tctatctctt gttttgaata ttttaaggag gtcgtaaaag tcatagtttg 3420 tgctactatg gggaagttga aatcaggtat gcagtctctt tgggacaaac tcaagcggtg 3480 tgctaaagag atgaaggggc tcgtgaacag cgacaggctg tctttggaga aaaaacttga 3540 tgatatcttc tctgcggacg acgagattgc tgaagcattg tcctcggatg tacaatctat 3600 tgttactgaa gcagtgcttt cagagcaatt gatctcgtct ggaggcggtg gagtcatatc 3660 acgaccgatg aaatgcgttc gtgaaatgta cgatcattca cggcgatcct tgcggtggtt 3720 ttgtacttgg tttctccagc aatttaagct ttacaaaaga aatattttgt acattcctga 3780 atttttaagg gagtcctttg atgagatctt tgaggcccta aaattgaaga ttttgtctaa 3840 cgatttcatc gagatgacga tccaaggtat gtctttcttt gttgttaatt taactacatc 3900 gttgtttttt ggtaagatag gtttaggttt gagtactgtg tctactgttt tctatctttc 3960 cattaaatac actggtttgg agagaagatt tcttggtact tcatttgtca atgaacatct 4020 ctcttccgct ataacgactg gtggtttttc ccatccgtac atgattccag tgaggtcttt 4080 ggttatgaaa agttgccaga attggatgaa acagaaactg ttgaggtatg agacggtctc 4140 tccaatagtt actgacctta ttgctaagga cgtgttaaac gcgtcagttt atcagtatgt 4200 aactccctac agagttagaa tggggttgta ttttagtatt ttgttggccc tactgaaacc 4260 aacatttgct gtcgtgctcc tggtgtgtat tctgttggtg gcggaacatg caaaatttta 4320 cagaactgtt gttgttcaag ccaatgttca tttatccttt gcttctcgac tgaggagatt 4380 gaatcctact tcgaaggcta gagcgattaa gcagttactc gtttccaagt ttgataggaa 4440 gagatttagc aaggataaca gtgacgataa gttctgcgat acatttgagg actttgattg 4500 cggtccgacc gagtttggaa taaactctaa agatttggtt ggtgctgggg aggcctcgac 4560 gtctgaacag cctgtggtag agttggatta ctccggcaat gagatcaaag ggaagagttg 4620 gggagatgtg actgacgatt ctatttctga gccggatatt gtggacagac cggacggtct 4680 ggtgttttca agtttggaga taactaatca aagggagaaa ttcttgtgtg atagcagtct 4740 tcttttgagt gatgctcttt tgcaatatcc agttgtggat gtgacgacca acgtcctgac 4800 tggtgataat attgttgaca ctttttcaga gtttttcttt ttagagaaaa agaaattaca 4860 tgtggagtta ggtaagatta ataatgttgt tgatttttac aaatcctcat tgaccgggaa 4920 gaatgctttt tataataagg tttggagctt gcgaaacaaa ttcgacgatt cgtcgttata 4980 tgtttcggaa aactcaaagg tctggtacaa gttgaaacag ggtgagaagg gtcatgttca 5040 acttgaaggt gtgtgcaaat acacgcttga caacaagctg gttcctttca cttactttta 5100 tgatgacttt caggtcacca gtgatgaatt gatgggcatg ttttccaaca ggagatgttt 5160 ggcattgcag tcaatcacac cgcgtgagtc cgggtttgac cttaatagca tgttggagaa 5220 tgtcacgttt ttcaataaac ctcctggtgc tggtaagacg accaccattg tgaggaatat 5280 ggtgagagac atcaaaagta atgtgaggtg tttggccctg acctgcacaa atgctgggaa 5340 gaaagagatc atacataagc tcaggaagga aggagtcaac aatgcattca gcttagtgat 5400 gacatatgac tcttttctca tcaatggtgg taagatggat actgatatgg tctattgtga 5460 tgagatcttt atgattcatg ctggactgtg ggtggcccta ttatcaatgt tgcaattcaa 5520 gaaaatggaa tgttacggtg acaaaaacca gattccattt atcaatagag tgccgaatac 5580 tctttgtcag tactcccaga agatattttt cttgtttagg atgatccacg acaatgtttc 5640 atacagatgc ccgccagatg tttgctacat tttgtctaat ttgagagatg ctgccggtaa 5700 tctgttgtat ccaaatggtg tcaaggctgt agggccgaac agcaatcttc tccgttctat 5760 gttcgtggtg ccactgagat ctgccgagga agttccatac agtccggatg tgaagatgat 5820 tgctttcacc aaacctgaga aggacgacat aatgcggcat ggtagaacag cggatggtaa 5880 gaccaattca gctcagactg ttaatgaggt tcaaggtggg acttttccca aagtcgagtt 5940 gtacagattg aggcaatatg ataatcccat ctacaatgat gtcaaccaat tcgtggttag 6000 tatatccaga cacacggagg ttatgaaata tagagtcttg tctacgaaga tgcacgacac 6060 tgttggacaa catatatcat ctttggataa ggttgctgat catatcataa gggagtgtgc 6120 atttaaacag caggtttaac acttatcggt tgaccattga aggttgttat attcctgaca 6180 ctttttcgag acctgcctca tctcatttga tggcagtcaa cgattttatg tcagtggtca 6240 acccgggatt agcttggatg caatttttgc acagaactat attgtttgag tatggtgatt 6300 ttgacatgcc acctgttgag aagatggtcc ttgatttttc aaaatacaag ccttatgtcg 6360 caggggagtt tgttgtctcg aaaattcttg gcaaaggtga gaggacgaga ccggacagta 6420 tgaaacaggg gataatctca ttgtcacata gaaatttttc tgcaccgaga ataaatgaac 6480 gtctggacgt ttataagact gctgaacgtt tatgtcagaa tctcgttaga tctttcgact 6540 tctcaaggtt gtatgagaac tatgatgtga ttcttcctga catgttcaaa attgacgatt 6600 ggttgcagga tagagatggt tcgaagtttg gtcggataaa aagggatatg gaccacaaat 6660 tgttggtcga acagtttgag agcttaaaat tcatgatcaa aggggagatg aaaccgaaga 6720 tggatatgtc gtcctataca gcttataatc caccggcgaa tatcatctat tataaccatc 6780 tggtaagtat gtattattct ccgttgtttc tggaggtctt tgataggata tcatactgtc 6840 ttagcaagaa gatagttatg tattccggga tgaatctaga aactctcggc accctgattg 6900 gttctaaact gcagaagccg ttgacatcat atcacacttt ggagattgat ttctcaaagt 6960 ttgataagtc ccaaggtatc ctatttaaag tttatgaggg gatgatttac cggtttttca 7020 agttttccga ggattactat accaacatag aggccactga atacttcata aagtatcgtg 7080 gtaggtgtgg aatcagcggg gagttgggtg cacaaaggag aacggggtca ccgaacactt 7140 ggttgtcaaa cacattggtt actatgggta tcatactcag tgtttacgac ctggatgata 7200 ttgatttatt cttagtaagt ggtgacgaca gtttgatctt ttcgagtaaa cccttgaaga 7260 ataaaactga tgagataaac agagatttcg gttttgaggc taagatgata gagaattcag 7320 tgccgtattt ttgctccaaa tatatcatca gtgatagagg aaaaatcaga gtcgttcctg 7380 atcctgtgag gttttttgag aagttgtctg tcccaattcg agttcaagat tttatgagtg 7440 acactctcat gcgggaaaaa tttaggtctt ataaggactt gatgaaggac tttgattacg 7500 atacaacgtg cgttttggtg gatgctttgg tgtgttatag gtacaattta ccaccgatgt 7560 gttcatatgc agcgttgtgt tatattcatt gtctgtgtgc aaattttact actttcagaa 7620 gagtctatga gagcgatttg actgttgtta tttaggtcag tatggatctc actggttgct 7680 tgcgtaagct tcgacagtgt gatcgacttc ttgagaggcg gggaaatgcc gtttcagaag 7740 ttcatttaag agcgatctta attgatcttg atgagtgttc tgagtgtttg atgctttgtg 7800 agcaggagta tatcagagac acggactgcc ttatgtcatt tctgttggcg ctgaaacact 7860 atgagattaa atttcacatg gatatgttga atatgattta tgactttaaa ctgaaaacgt 7920 cccagttgat tcaggatgtt tttagaatta aagtaatcat cagagtgtat cttgagttgt 7980 gtgaaattga tccacttttg gctatgactg aggcttgtca agacattctt gagagtggta 8040 ttttgaacat cggtttcatc tcttcggccc tcgggcatga accgaacata cttatcacaa 8100 tattgtcgat ggtcgatttt atagtcgtca ttgatgatcg accactggtc tttatccctt 8160 caaaaataag gtttgttggc gacaagttgg ggtcaggtca ttttaggtgg tttgataagt 8220 ttttctttgg gagtgacata taatctggtt aatattcaaa ggatgggtga tcgttttgct 8280 tgcgattctt tggatagtat agccagagat atacactctt tgtatatttt gtttttctat 8340 acgtttctag taggtgtttt gttgacattc ataatgtctt gtgttagagg tgttatagaa 8400 atttatcgtg ttaattaggg agtttttgat aatgtttcct tcctttggtt atttacttcg 8460 tattttataa aatccaaaaa atatattatg ctttttacat attgttctgt ttagttggtg 8520 tgaaaagtga tctacctaaa ttacgtgtta tacacgtaga ccttggtaga tctagtatat 8580 aaataaatag gtcg 8594 //