ID EU260463; SV 1; linear; genomic RNA; STD; VRL; 3357 BP. XX AC EU260463; XX DT 03-APR-2008 (Rel. 95, Created) DT 03-APR-2008 (Rel. 95, Last updated, Version 1) XX DE Chapare virus strain 810419 segment S, complete sequence. XX KW . XX OS Mammarenavirus chapareense OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus. XX RN [1] RP 1-3357 RA Erickson B.R., Albarino C., Nichol S.T.; RT "Chapare virus, a newly discovered arenavirus isolated from a fatal RT hemorrhagic fever case in Bolivia"; RL PLoS Pathog. 4(4):e1000047-e1000047(2008). XX RN [2] RP 1-3357 RA Erickson B.R., Albarino C., Nichol S.T.; RT ; RL Submitted (02-NOV-2007) to the INSDC. RL Special Pathogens Branch, Centers for Disease Control and Prevention, 1600 RL Clifton Road, Atlanta, GA 30333, USA XX DR MD5; dc24cddd1e10920acdd8c87782c9ef77. DR EuropePMC; PMC2277458; 18421377. DR EuropePMC; PMC2658809; 19343214. DR EuropePMC; PMC2680969; 19478873. DR EuropePMC; PMC3053032; 21056893. DR EuropePMC; PMC3131282; 21750710. DR EuropePMC; PMC3210867; 21982818. DR EuropePMC; PMC3309595; 22377271. DR EuropePMC; PMC4111098; 24161346. DR EuropePMC; PMC4136298; 24920811. DR EuropePMC; PMC4217180; 25352624. DR EuropePMC; PMC6322784; 30576397. XX FH Key Location/Qualifiers FH FT source 1..3357 FT /organism="Mammarenavirus chapareense" FT /segment="S" FT /host="Homo sapiens" FT /strain="810419" FT /mol_type="genomic RNA" FT /country="Bolivia:Samuzabeti, Chapare Province, Cochabamba FT Department" FT /isolation_source="human sera" FT /collection_date="2003" FT /db_xref="taxon:3052302" FT primer_bind 1..20 FT CDS 59..1513 FT /codon_start=1 FT /product="glycoprotein precursor" FT /db_xref="GOA:B2C4J0" FT /db_xref="InterPro:IPR001535" FT /db_xref="UniProtKB/Swiss-Prot:B2C4J0" FT /func_characterised="identical sequence" FT /protein_id="ABY87068.1" FT /translation="MGQLVSFFQEIPNIIQEAINIALIAVSLIAILKGLVNLWKSGLFQ FT LLVFLILAGRSCSFKIGRSTELQNITINMLKVFEDHPISCTVNKTLYYIRESENATWCV FT EIAALDMSVLLSPHDPRVMGNLSNCVHPDIKHRSELLGLLEWILRALKYDFLNYPPLLC FT EKVTSSVNETRIQINVSDSAGSHDFKETMLQRLAILFGTKLMFDKTPKQFIVIRNQTWV FT NQCKSNHVNTLHLMMANAGHAVKLRRLQGVFTWTITDAAGNDMPGGYCLERWMLVTSDL FT KCFGNTALAKCNLNHDSEFCDMLKLFEFNKKAIESLNDNTKNKVNLLTHSINALISDNL FT LMKNRLKELLDTPYCNYTKFWYVNHTITGEHSLPRCWMVKNNSYLNESEFRNDWILESD FT HLLSEMLNKEYFDRQGKTPITLVDICFWSTLFFTTTLFLHLVGFPTHRHIQGEPCPLPH FT KLNSNGGCRCGRYPELKKPTTWHRKH" FT CDS complement(1609..3297) FT /codon_start=1 FT /product="nucleocapsid protein" FT /db_xref="GOA:B2C4J1" FT /db_xref="InterPro:IPR000229" FT /db_xref="InterPro:IPR035083" FT /db_xref="InterPro:IPR035084" FT /db_xref="InterPro:IPR038115" FT /db_xref="UniProtKB/Swiss-Prot:B2C4J1" FT /func_characterised="identical sequence" FT /protein_id="ABY87069.1" FT /translation="MSNSKEIPSFRWTQSLRRELSSFTIPVKSDVLKDAKMIADGLDFS FT QVALVQRVLRKTKRTDGDLDKLRDLNREVDNLMAMKSAQKNTILKLGDLNKSELMDLAS FT DLEKLKKKVGQTERSPVGGVYLGNLSQSQLSKRTDLLRRLGFQQPQVRSTGVVRIWDVA FT DPTRLNNQFGSVPALTIACMTVQGGDTMGNVVQALTSLGLLYTVKFPNLADLEKLAAEH FT DCLQIITKDESAINISGYNFSLSAAVKAGATFLDGGNMLETIKVTPDNFSTIIKTVLGV FT KKRENMFIDERPGNRNPYENLLYKLCLSGEGWPYIGSRSQVKGRSWENTTVDLSLKPTQ FT GPKAPEKVGLNVRLSHLTEIQESVVREAMSKINPSHTTWIDIEGTSNDPVELALYQPES FT GNYILCYRKPHDEKGFKNGSRHSHGMLLKDLESAQPGLLSYIIGLLPQDMVLTAQGSDD FT IKRLLDTHGRKDLKVVDVKLSSDQARNYEEQVWSDFGHLCKKHNGVVVPKKKKDKDPSQ FT STEPHCALLDCLMFQSVIDGQPPQIKLQSLLPEVLLFTMKPAFAI" FT primer_bind complement(3338..3357) XX SQ Sequence 3357 BP; 915 A; 746 C; 698 G; 998 T; 0 other; tcgcacagtg gatcctaggc gctttttggt cacgcataaa tcgtgagcaa gaataaacat 60 gggtcaactt gtgagtttct ttcaggaaat tcctaacatc atacaggaag caatcaacat 120 tgctctaata gctgtcagcc tcattgctat cctaaaaggg ttggtcaatc tgtggaaaag 180 tggtttgttt caactcctgg tcttccttat tctagctgga aggtcctgct cattcaaaat 240 tggaagatcc acagaactcc aaaacatcac aataaacatg ttaaaggtct ttgaggacca 300 tcctatttct tgcacagtga acaaaactct ttattacatc cgtgaaagtg agaatgcaac 360 atggtgtgta gagattgctg cactggacat gtctgtcttg ctctcgccac atgatccacg 420 tgtaatgggc aacctatcaa actgtgttca cccagacatt aaacatagat cagaacttct 480 aggtctattg gagtggattt tgagagctct gaaatatgat tttctaaatt atccacccct 540 cttgtgtgaa aaagtgacat catctgtcaa tgaaacacgc attcagataa atgtgagcga 600 tagtgcaggt tctcatgatt tcaaagaaac catgctccaa aggctggcca tactatttgg 660 cacaaaattg atgtttgata aaacacctaa gcagttcata gttatcagaa atcagacttg 720 ggtgaatcag tgcaagtcca atcatgtcaa cacgttgcat ttgatgatgg ctaatgctgg 780 gcatgctgtt aaattaagaa gattgcaagg ggtgttcact tggacgatca cagatgctgc 840 tggcaacgac atgcctggag gttattgttt ggaaaggtgg atgttagtca catctgacct 900 gaaatgtttt ggcaacactg ctcttgcaaa gtgtaactta aatcatgact ctgagttctg 960 tgacatgttg aaactgtttg aatttaacaa aaaagcaatt gagtcattga atgacaacac 1020 aaagaacaaa gtcaatctat taacacattc cattaatgct ttaatttctg acaatctttt 1080 gatgaagaat agattaaaag agttattgga cactccctac tgcaactaca caaaattctg 1140 gtatgtcaac cacaccatca caggagagca ttcacttcca cgctgttgga tggttaaaaa 1200 caacagctac ctcaatgaaa gtgaatttag aaatgattgg attcttgaga gtgaccactt 1260 gttgtccgaa atgttgaaca aagagtattt tgacagacaa gggaaaaccc caataacact 1320 tgttgacatc tgcttttgga gcacactgtt cttcacaaca acattgtttc tccatctagt 1380 aggcttccca actcacagac acattcaggg agaaccttgc ccactgcctc acaagctcaa 1440 cagcaatggt ggatgcaggt gtggcagata tccagaactc aagaaaccaa caacctggca 1500 caggaaacac tgaacttgag tggctcccaa cccaccgtcc cgggcatagc ccgggacggt 1560 gcggcctccc agtccgcggc aaatgccgcg gactgggagg gcatgggcct atatggcgaa 1620 tgccggcttc attgtaaaca gcagcacttc tggtagaaga ctctgcagtt tgatctgtgg 1680 tggctgccca tctatcaccg actggaacat cagacagtca agcagggcgc aatgtggttc 1740 tgttgattgt gaggggtctt tgtctttttt cttttttggc accacaaccc cattgtgctt 1800 cttacagagg tggccgaaat cagaccagac ctgctcctca tagtttctgg cttgatcaga 1860 acttagtttc acatccacga ccttgagatc tttgcgacca tgtgtgtcta aaagtctttt 1920 gatgtcatca gagccttggg cggttaggac catgtcttgt ggtaacaacc ctatgatgta 1980 gctaaggagt ccaggttggg ccgattccaa gtcctttagt agcattccat gtgaatgtct 2040 acttccattc ttgaatcctt tctcatcatg aggttttctg taacagagta tgtaattacc 2100 tgattccggt tgatataatg ctagctcaac agggtcattg ctggttcctt caatgtcaat 2160 ccatgttgtg tgggaaggat taattttgct catcgcctct ctaacaactg actcttggat 2220 ctctgtcaga tgagagagtc tcacatttaa ccccactttc tcaggtgctt tcggtccttg 2280 tgttggcttc aagctaagat caacagttgt attttcccaa gacctacctt tcacttgaga 2340 cctggagcct atataaggcc aaccttcacc tgataggcac aatttatata ataggttttc 2400 ataggggttc ctgtttcctg gtctctcatc gataaacata ttttctcttt tctttacacc 2460 caaaactgtc ttgataatgg ttgagaaatt gtctggagtc acctttattg tttctaacat 2520 gtttccccca tccagaaaag tggccccggc cttaacagct gctgaaaggc tgaaattgta 2580 tcctgatata ttgattgcac tttcatcctt agtgatgatc tgaaggcaat catgttcggc 2640 agccaacttt tccagatcag ctaggtttgg gaacttcaca gtgtaaagga gacctaatga 2700 tgttaatgct tggacaacat ttcccattgt atcgcccccc tgaacggtca tgcaggctat 2760 tgtcagtgca ggaactgagc cgaactggtt gttcagtctg gtgggatcag ccacgtccca 2820 aattctaaca acacctgtgg atctcacctg tggttgttga aatcctagtc tcctcaaaag 2880 atcagttctt ttggataact gtgattggct aagattccca aggtagaccc cacctacagg 2940 agatctctct gtctgtccaa ctttcttttt caacttttct agatcagatg caagatccat 3000 gagctcagat ttgttgagat caccaagctt caggatggtg ttcttctgag cacttttcat 3060 ggccatcagg ttgtccactt ctctattgag gtctcttagc ttgtccaaat ctccatcggt 3120 tctttttgtt tttctaagaa ctctctgaac aagtgcaact tggctaaaat cgagaccatc 3180 tgcaatcatt ttagcatctt ttagcacgtc tgacttcaca ggaattgtga aactgctcaa 3240 ttctcgtctt aaagactgag tccagcggaa acttggaatc tcttttgagt tgctcatgat 3300 ggaaaggctt tctgataaga aattgcttac caaaaatgcc taggatccac tgtgcga 3357 //