Dbfetch

Dbfetch

ID   EU257204; SV 1; linear; genomic RNA; STD; VRL; 603 BP.
XX
AC   EU257204;
XX
DT   03-NOV-2008 (Rel. 97, Created)
DT   24-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Soybean dwarf virus isolate MD2-R coat protein and movement protein genes,
DE   complete cds.
XX
KW   .
XX
OS   Soybean dwarf virus
OC   Viruses; Riboviria; Luteoviridae; Luteovirus.
XX
RN   [1]
RP   1-603
RX   DOI; 10.1016/j.virol.2011.01.001.
RX   PUBMED; 21256532.
RA   Schneider W.L., Damsteegt V.D., Stone A.L., Kuhlmann M., Bunyard B.A.,
RA   Sherman D.J., Graves M.V., Smythers G., Smith O.P., Hatziloukas E.;
RT   "Molecular analysis of soybean dwarf virus isolates in the eastern United
RT   States confirms the presence of both D and Y strains and provides evidence
RT   of mixed infections and recombination";
RL   Virology 412(1):46-54(2011).
XX
RN   [2]
RP   1-603
RA   Stone A.L., Schneider W.L., Damsteegt V.D.;
RT   ;
RL   Submitted (31-OCT-2007) to the INSDC.
RL   USDA-ARS, FDWSRU, 1301 Ditto Avenue, Ft. Detrick, MD 21702, USA
XX
DR   MD5; 09f2dfe7ae914c6047cfee5578f06f1f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..603
FT                   /organism="Soybean dwarf virus"
FT                   /host="Trifolium repens"
FT                   /isolate="MD2-R"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Ann Arundel Co., MD"
FT                   /collection_date="1991"
FT                   /note="recombinant"
FT                   /db_xref="taxon:12049"
FT   CDS             1..603
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:B6RNM8"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:B6RNM8"
FT                   /protein_id="ABY83063.1"
FT                   /translation="MVAVSNVTLQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR
FT                   RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT                   ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT                   WHDTSEDQFKVHYKGNGDSKIAGSFKISINVLTQNAK"
FT   CDS             17..586
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:B6RNM9"
FT                   /protein_id="ABY83064.1"
FT                   /translation="MSHYNDDAIVEPHEALHEFSSWLFQRPPAQHSAEEDNDDEGEIIE
FT                   EEAIFPEDQARLTHSSFRRTASMAVPRELSLSGRLYQSASHSLMEYSRPTMNIRSRVSY
FT                   YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSINSQLQRAVRNDSPPRLSMASNGMIPV
FT                   KTNSRSTIRGTETPRSQAPSRSRSMS"
XX
SQ   Sequence 603 BP; 185 A; 158 C; 133 G; 127 T; 0 other;
     atggtcgcgg ttagcaatgt cacattacaa cgacgacgca atcgtagagc cgcacgaagc        60
     gctccacgag ttcagctcat ggctattcca acgaccaccg gcgcaacaca gcgcagaaga       120
     agacaacgac gacgaaggag aaataataga ggaggaggca atatttccgg aggatcaggc       180
     aaggctcaca cattccagtt ttcgaaggac ggcatcaatg gcagttccaa gggaactatc       240
     actttcgggc cgtctttatc agagtgcaag ccactctctg atggaatact caaggcctac       300
     catgaatata agatcacgag tatcttatta cagttcatct ccgaggcctc ttccacctcg       360
     tcaggctcca tcgcttatga gcttgaccca cactgcaagt actccgaaat tcaatcgcta       420
     ctcaataaat tctcaattac aaagagcggt tcgaaacgat tccccaccaa ggttatcaat       480
     ggcctcgaat ggcatgatac cagtgaagac caattcaagg tccactataa ggggaacgga       540
     gactccaaga tcgcaggctc cttcaagatc tcgatcaatg tcttaacgca gaatgctaaa       600
     tag                                                                     603
//