ID EU236594; SV 1; linear; genomic RNA; STD; VRL; 7556 BP. XX AC EU236594; XX DT 21-FEB-2008 (Rel. 94, Created) DT 01-SEP-2020 (Rel. 144, Last updated, Version 3) XX DE Bovine rhinitis B virus 1, complete genome. XX KW . XX OS bovine rhinitis B virus 1 OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Picornaviridae; Aphthovirus. XX RN [1] RP 1-7556 RX DOI; 10.1016/j.virol.2007.12.019. RX PUBMED; 18201745. RA Hollister J.R., Vagnozzi A., Knowles N.J., Rieder E.; RT "Molecular and phylogenetic analyses of bovine rhinovirus type 2 shows it RT is closely related to foot-and-mouth disease virus"; RL Virology 373(2):411-425(2008). XX RN [2] RP 1-7556 RA Hollister J.R., Vagnozzi A., Knowles N.J., Rieder E.; RT ; RL Submitted (19-OCT-2007) to the INSDC. RL USDA-ARS, PIADC, PO BOX 848, Greenport, NY 11944, USA XX DR MD5; 03597ba7bb46715e248f3d43e476b6c9. DR EuropePMC; PMC3486329; 22915802. DR EuropePMC; PMC4366061; 25789939. DR EuropePMC; PMC4822724; 27081310. DR RFAM; RF00210; IRES_Aptho. XX CC Genome sequence lacks part of non-coding region. XX FH Key Location/Qualifiers FH FT source 1..7556 FT /organism="bovine rhinitis B virus 1" FT /host="bovine" FT /strain="EC11" FT /serotype="2" FT /mol_type="genomic RNA" FT /country="United Kingdom" FT /db_xref="taxon:2758977" FT 5'UTR 1..614 FT CDS 615..7457 FT /codon_start=1 FT /product="BRV2 polyprotein" FT /db_xref="GOA:B0Z3W9" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008739" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR015031" FT /db_xref="InterPro:IPR023881" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="InterPro:IPR037080" FT /db_xref="InterPro:IPR038765" FT /db_xref="UniProtKB/TrEMBL:B0Z3W9" FT /protein_id="ACA05181.1" FT /translation="MTTERLLHQLLIHTIHKKINKTNNMALELGFNNTLVTADLDGNEK FT IIHGLPNRHDNCWLNSLMQMTNWVGEGFFKNTYDNPDLIPQTIKFLTEYTGTDLSYGGP FT PSIVLYKIRDLLDTKVGTSKEPGDYIVSCQGTYCLADMQAGVFMDGEEHAVFYACTALG FT WIKVDDESITRCIPDPANVLVFVPWDRETICDYDAEFFKQVYLRGAGSSKPQSGNVNES FT GNSGSIINNYYMQQYQNSIDVTVGDKTTEGGSGSGDTAGSATHNNTTKEDKGKDDWFSS FT LVSGIGSAIPGAVVGLLADKKTEETTKLEDRIMTTRHHTDITTTQSTVGITHGYAHSEL FT DQVNAASGTHEHVDHVSRIYMKKLFTWSMSDATGYYHAYPLPDLILTEAREYHNLLKSY FT ALYRNGWEVHVSVVSTMYHSGCLIVAMVPEFVKENTNGSTYNPTFAQLTLYPHQLINLR FT TNTTASIRVPYVGATDMDDHRLHSVWSLVVGVVVPMTISNGGSDLTSLDVRASFTPLNV FT KVAGPMPNKQGIVPVAAKAGYSGFCTTSPITADPVYGKVVNPPRRHIPGRFTNFLDVAD FT ACPTMARFTSKPSITTVSGASERLLATIDVSLVSHEMSFTYLAGLSSLYAQYRGSINMH FT CIYTGFVSDKAKFLLVFVPPGADPPTTLSEAQHCITLEWDTGLNSETVFNIPYISQTYY FT TSTHSSTADIGNVSGRVQIYQVTAPSSTSELLVLFSSGRDFQLRCPVEPVKQVTDVGET FT GRYKILDATQQNGHSANTFRLHTDVSFALDRYALLSVVSGNASNTHQRYTNLDPTKLPA FT DTFMKKLIDSCTYYFSDLEVTVIAKGEVPAWANVIWHPVGAPHTFTNDNLPDDVNVYLT FT TSSNVSVGFTGPSSSGSIATFAVPYTSFYRVLPTKYAGRTLFVKQEQFEPFNHGGFGEI FT ITTGREATKHRVLIRMKRAEMYCPRALYPSASVTQLSTRRKLRLTGEIVKQGATNFELL FT QQAGDVETNPGPASFSKLIEDFGCLSNSMEEIARHIGDFKVMMKGAGPWYKAFKYLWKV FT ATIVVTITRTKDTVLVGMLLADIGLEVFDTRVMMDNLVDRFKPYFHVSPPKFDFKTEVL FT DKVRDFFATDEEEEEFDATNPFKQISLKSVNDIFNLVKNGQWLMSFFLSLRDWFRTWLE FT SEEKFITYHDLVPQIIEHQERLLVPDEYAEAHNWLERKREVLLQANQYALAKLCEPKVG FT PPPETRPEPVVILFRGDSGQGKSFLSNLIAQALSKLLTGRVDSIWSCPPDPDHFDGYRG FT QKVVIMDDLGQNPDGTDFKYFAQMVSTTAFIPPMAALEDKGKVFNSPVIIATTNMHEHF FT TPKTMACPGALVRRFTYDYVLAAKKPYIREKTETLNVRKALNATGHECPCGLFEFDCPL FT LNGEAIDLTPVRDTPAVESVYELIELVYNEVMDRRTVSDLKILKQMGKYTTLDNIKKHR FT PTVIPFSGQGYQPGRDINASPEMQEKLLKYLVKHEHLDAALNFYNEECDEEVCTKWGPS FT IGEYLKVKTLWMKVKKYSHLFLTGLMLIGNMLLLYLNNRTPEEKKKKKKNKTEEDNTNK FT EGPYGGQAKPPVKVDKLKVNPLITTESGNPPTDMQLVVLKNTQPISLVRDGQIVATCCA FT LGVFGTTYLVPYHLFEESFDTLIIGDRHLKEQDYKLDTFELRDGKISDVAALTLNKGAR FT VRDITSHFRDEVKVTKNSPVVGCVKNTTVGQLVFNGTAAGFKDHIICSDGDTLPNMFVY FT TANTQYGYCGSGILVKDGSHTVIIGIHSAGGNGKGYASCVTRSALLALRGRERPELEGL FT MLGERPGEKVHVSRKTKLAPTVAYGVFRPNYGPAALSNSDTRLNEGVVLDNVIFSKHNS FT NVVLGEKDLALYRLCAAEYASHLHNVLGKTGAPLTNVEAVLGIDGLDAMEPNTAPGLPW FT ALQHKRRHDLLDFTTGEMQPALAERFEQLENMDYSFECQTFLKDEIRPSEKVRAGKTRI FT VDVLPLEHIIFSRKYLGRFCAAMHRNYGPNIGSAVGCDPDVAWQEFGTHFSQYRNVWAI FT DYTAFDSCHSTQLMSVMADEVFSDAYGFDERARYAVKSLCKTVHAYEDKRITIDGGLPS FT GCSATSILNTVLNNIYVMFALKRTYPNTEMSDYSLIAYGDDLVLASDFDYDINLVKKSF FT AVLGHTITPEDKSDNGFTLGKNITDVTFLKRAFERDCVLGFYKPVMNSKVLEAILSFAR FT RGTLQEKLTSVAGLAFHSGEEEYNRLFSPFVGSFEIPSYRCLRLRWVHKMSN" FT mat_peptide 615..1235 FT /product="Leader" FT mat_peptide 1236..1511 FT /product="VP4" FT mat_peptide 1512..2195 FT /product="VP2" FT mat_peptide 2196..2852 FT /product="VP3" FT mat_peptide 2853..3509 FT /product="VP1" FT mat_peptide 3510..3626 FT /product="2A" FT mat_peptide 3627..4007 FT /product="2B" FT mat_peptide 4008..4955 FT /product="2C" FT mat_peptide 4956..5354 FT /product="3A" FT mat_peptide 5355..5429 FT /product="3B" FT mat_peptide 5430..6053 FT /product="3C" FT mat_peptide 6054..7454 FT /product="3D" FT 3'UTR 7458..7556 XX SQ Sequence 7556 BP; 2151 A; 1815 C; 1627 G; 1963 T; 0 other; cccccccccc ccctacttaa agatgtacgg ttttgctgct ttcacagagt aaagcagata 60 gaggttctga actggcaaac tttacctcga aacacgcccg tttttctgct gtgtctcaca 120 gactgtcctg tcacacttgt ggcggcttgt gacactgtga acatagtgag accgaccaag 180 acaacagttt caagtgatga acatcgaacg tctaaactgg atccgtaact ggacatgtta 240 gggcaaggac ttcccccctg gtaacaggag cctggctggc caaaagcccc gctcattgag 300 cctagcatgt tgtcgaccct ggactgttca gtttagttag tacatggaat tcacttgtca 360 cggttcttct gaactcggtc tctagtatga cagcctaagg atgccctcca ggtaccccgg 420 ggtaacaagt gacacccggg atctgaggag gggactactt tacgtagttt aaaaaacgtc 480 taagctgtta tggtgaccag aggctggcac ctttcacttt taaaattaca ctactgacta 540 caattgaagt gataacggtt ttacaggctt tcaaactagt tacacaagca ctgttttcct 600 gacacacaca ctttatgact actgagagac ttctacatca actcttaata cacaccatcc 660 acaagaaaat aaacaaaact aacaacatgg cactggaact tggtttcaac aacactctcg 720 taactgctga ccttgacgga aatgaaaaga tcatacacgg tttgcctaat agacatgata 780 attgttggct caattcgctt atgcaaatga ccaactgggt tggagaaggg tttttcaaaa 840 acacctatga caaccctgat ctaattcctc agactattaa gttcctaaca gaatatacag 900 gcactgactt gagttatgga ggaccacctt ccatagtttt gtacaaaata agagatcttc 960 ttgacacaaa ggttggcact tccaaagaac ctggtgatta catcgtatct tgtcaaggca 1020 cttactgttt ggcagacatg caggctggag ttttcatgga cggcgaggag cacgcagtgt 1080 tctacgcttg tactgctctt ggctggataa aagtagatga tgagagcata accaggtgta 1140 taccagatcc agccaatgtt ttggtctttg ttccgtggga ccgtgagacc atctgtgact 1200 acgacgcaga gtttttcaaa caagtgtact tgagaggtgc tggctcgtca aaaccacagt 1260 ctggtaacgt aaacgagagt ggaaactctg gctccataat aaacaactac tacatgcaac 1320 agtaccagaa ctcaatagat gtgaccgttg gtgacaagac cactgaagga ggttcaggtt 1380 ctggtgacac cgctggcagc gccacgcaca acaacaccac aaaagaggac aaaggcaagg 1440 atgactggtt ctccagtttg gtgtcgggca ttggtagtgc tattcctgga gccgttgttg 1500 gtttgcttgc tgataaaaag actgaggaaa ccaccaaatt ggaagaccgg ataatgacca 1560 ctcgccatca cacagacatc actaccactc agtctaccgt tggaatcacc cacgggtacg 1620 cacactccga gctcgaccaa gtcaatgctg ccagtggtac tcacgaacat gtagaccacg 1680 tgtctcgtat ttacatgaaa aaacttttta cttggtccat gagcgacgcc acagggtatt 1740 accatgctta cccccttcca gacttaattc tcacagaagc tagggaatac cacaatttgt 1800 taaagtccta cgctttgtac cgcaatggtt gggaagttca cgtctctgtc gtatcgacaa 1860 tgtaccactc aggttgcttg attgtagcca tggttcctga atttgtgaaa gagaacacca 1920 acggcagtac ttacaaccct acctttgcac agcttactct ttacccccac caacttatta 1980 acctaaggac taatactact gcctccatcc gcgtgccgta cgtgggtgct accgacatgg 2040 acgatcacag actacactca gtttggtctc ttgttgttgg cgtggtcgtg cctatgacaa 2100 tctccaacgg tggtagtgat ctcaccagtc ttgatgttcg ggctagtttc acacccctta 2160 atgttaaggt tgctggacct atgcccaaca aacaaggtat tgtacctgtg gcagccaaag 2220 ctggttattc agggttttgc accactagtc ccatcaccgc ggacccagtc tatggaaaag 2280 tggttaaccc tcccagaaga cacatccctg gacgtttcac aaatttcttg gacgtggcag 2340 atgcttgccc taccatggct aggtttacca gtaaacccag cattacaact gtttccggtg 2400 cttcagagag actactagcc actattgatg tcagtttagt gtcacatgaa atgtcattca 2460 cttacctggc tgggttgtca tctctttatg ctcagtaccg tggaagtatc aacatgcatt 2520 gcatctacac agggtttgtc agtgacaagg ccaaattttt actggttttt gtgcctcctg 2580 gtgctgatcc ccccaccact ctgagtgagg cccaacattg tataactctg gaatgggata 2640 ccggattgaa ttctgagaca gtgtttaata taccctacat ttcccagact tattacactt 2700 caactcactc cagtacagct gacattggta atgtttcagg tagagtacag atataccaag 2760 ttacagcacc ttcctctact tcagagttat tagttctgtt ctcttctggt agagatttcc 2820 agctgcgttg cccagttgag cctgtgaaac aagtcactga cgttggagaa acaggtaggt 2880 acaagatctt ggatgcaact caacaaaacg gacactcggc taacaccttc cgtcttcaca 2940 ccgatgtttc tttcgctctt gaccgctacg cactactcag tgttgtctct ggaaacgcaa 3000 gcaatacaca ccagagatac accaatcttg accctaccaa actgcctgcc gacacgttca 3060 tgaaaaagct cattgactct tgcacctact acttttctga cttggaagtt acagttattg 3120 caaaaggtga agtacccgcg tgggcgaatg taatttggca tcctgttggt gctcctcaca 3180 ctttcaccaa cgataaccta ccagacgatg tcaatgttta cctgactact agttccaacg 3240 ttagtgttgg gttcactgga ccgtccagca gtggcagtat tgctaccttc gcagtaccct 3300 acacctcttt ttacagagtt ctacctacga aatacgctgg tagaactctc tttgtaaaac 3360 aagaacagtt tgagccattc aaccacggag gttttggtga gattatcact acagggagag 3420 aggccaccaa acacagagta cttatcagaa tgaaaagagc agaaatgtac tgtcctcgag 3480 ctctttaccc ttccgcctca gtgacacagc tttccaccag acgaaaactt aggctaacgg 3540 gtgaaattgt taagcaagga gccacgaatt tcgaactttt acaacaagct ggtgacgtgg 3600 agaccaaccc aggacccgca tctttcagta aactaattga agactttgga tgtttgtcca 3660 attctatgga agaaatcgcc agacacatcg gcgactttaa agtcatgatg aaaggggctg 3720 gaccatggta caaagctttt aaatacctct ggaaagtagc cacaattgtt gtgactatta 3780 ccaggactaa agacacagtt ctcgttggca tgctcctagc tgacattgga ttagaggttt 3840 ttgacaccag agtcatgatg gacaatcttg tagacaggtt taaaccatac tttcatgtta 3900 gtccacccaa atttgacttt aagactgaag ttttagacaa ggtcagggac ttctttgcta 3960 ctgacgagga agaagaggag tttgatgcta ctaacccctt caaacaaatt tctttgaaaa 4020 gtgttaatga catcttcaat ctcgtcaaaa acggccaatg gcttatgagt ttcttccttt 4080 cgcttagaga ctggtttaga acttggcttg aaagtgaaga gaaattcatc acttaccacg 4140 accttgtacc tcagataatt gaacaccaag aaaggctcct ggtgcctgat gagtacgctg 4200 aagcacacaa ctggctggaa aggaaaagag aagttctcct ccaggctaat cagtatgctc 4260 ttgctaagct ctgtgaaccc aaggttggac caccacctga aacaaggcct gaaccagtgg 4320 ttatcttgtt cagaggggat tccggccagg ggaaaagttt tctctctaac ttaattgctc 4380 aggcgttgtc caaacttctc actggtagag ttgactctat ctggtcttgt cctccagatc 4440 ctgaccactt tgacgggtac agaggtcaaa aagtcgttat tatggacgat cttggacaga 4500 accccgatgg cacagacttc aagtactttg ctcaaatggt ttctaccaca gctttcatac 4560 caccgatggc agccctggag gacaaaggca aggtttttaa ctcaccagta atcatcgcca 4620 ccaccaacat gcacgaacac ttcacaccaa aaacgatggc gtgtcctggt gctcttgtcc 4680 gtcgttttac ttatgactat gttctagcag caaagaaacc atacatcaga gagaaaactg 4740 aaacactcaa cgtcaggaag gctctgaatg ccactggaca tgagtgcccg tgtgggctct 4800 ttgaatttga ctgccccctt cttaacggtg aggcaataga tctgactcca gttagggaca 4860 cacctgcagt tgaaagtgtc tatgaactca tagaactggt gtataacgaa gtcatggacc 4920 gcagaactgt ctcagacctc aaaatactca aacaaatggg taaatacaca acccttgaca 4980 acatcaagaa acacagacca acagtcatac ctttttctgg tcaaggatac caaccaggca 5040 gagatatcaa cgccagcccg gaaatgcaag agaaactgtt aaaatacctg gttaaacatg 5100 aacaccttga tgctgctctt aacttttaca atgaagaatg tgatgaggag gtgtgtacta 5160 aatggggccc ttccattggt gaatatctca aagtaaaaac cctttggatg aaagtgaaga 5220 agtattcaca ccttttcctc acaggtctta tgcttatagg aaatatgctt ctcctttatc 5280 tcaataatag aacgccagaa gagaaaaaga agaagaagaa aaataaaaca gaagaagaca 5340 ataccaacaa ggagggacct tacggaggtc aggccaagcc accagttaaa gttgacaaac 5400 tcaaagtaaa ccctctcatt acaactgaga gtgggaaccc tccaactgac atgcagttgg 5460 tggtactcaa gaacacacaa ccaatttcac tagttagaga tggacaaatt gtcgccactt 5520 gttgtgctct tggcgttttt ggaaccacct atttagttcc ctaccacctc tttgaagaaa 5580 gttttgacac cctcattata ggagacagac atctgaaaga acaagactac aaacttgaca 5640 cttttgaact cagagacggg aaaatcagcg atgttgctgc cctcacctta aacaaaggag 5700 cccgtgtgcg tgacattacc tcacactttc gagacgaggt caaggtcact aagaattcac 5760 cagttgtcgg ttgtgtcaag aacacaacgg tcggtcaact tgtatttaac gggacagctg 5820 ctggttttaa agaccatatc atctgctctg atggtgacac tctgcctaat atgttcgttt 5880 acactgccaa cacacagtac gggtattgcg gaagcggcat actcgtcaaa gatggttctc 5940 acacagtcat cataggcatc catagtgcag gaggtaacgg aaaaggttac gctagttgtg 6000 tcactcgttc cgcactcctc gcactgaggg gcagagaaag gcccgagctc gaagggctta 6060 tgttaggaga acgacctgga gagaaagttc atgtttccag aaagaccaaa ctcgctccca 6120 ctgttgccta cggtgttttc cgtccaaact atgggcctgc agctctcagc aactctgaca 6180 ccagactaaa tgagggcgtt gtgctcgaca atgttatttt cagcaaacac aattccaatg 6240 ttgttcttgg cgaaaaagac ctcgctcttt accgtctctg tgctgctgag tatgcctcac 6300 atcttcacaa tgttcttggc aagaccggtg cgcctttgac caacgttgag gccgtgctcg 6360 gtattgacgg actcgacgcc atggagccca atactgcccc cggtctacct tgggctcttc 6420 agcacaaacg cagacatgac cttcttgact tcactaccgg tgagatgcaa cctgctttgg 6480 ctgagaggtt cgagcaactt gaaaatatgg actacagttt tgagtgccaa acctttctga 6540 aagacgagat aagacccagt gaaaaagtca gagccgggaa gaccagaata gtggacgttc 6600 ttcctcttga gcacattatc ttttctcgta aatatttggg cagattttgt gccgccatgc 6660 accgcaacta cggcccaaac atcggttccg cagttggttg cgatccagac gtggcctggc 6720 aagagtttgg cactcacttt tctcaataca ggaatgtttg ggccattgac tacacggctt 6780 ttgactcttg tcactcaacc cagctcatgt cagttatggc tgacgaggtt ttctcagacg 6840 catacggttt tgatgagagg gcacgttacg ctgtgaaatc cttgtgcaag acagtccatg 6900 catacgagga caagcgtatc accatagatg gtggtttacc ttcaggttgt agtgccacca 6960 gcattctgaa cactgttctc aacaacattt acgtaatgtt tgctctcaag cggacttatc 7020 ctaatacaga gatgagtgac tactcactca ttgcatatgg tgatgacttg gtcctagcct 7080 cagactttga ttacgacatc aacctcgtga agaaatcttt tgcagtactt ggacacacca 7140 taacacctga agacaagtct gacaatggtt ttactttagg taagaacatt acagatgtca 7200 catttcttaa acgcgctttc gaacgcgatt gtgtcctagg gttttacaaa cccgtgatga 7260 actccaaggt tttggaggcc atcctgtcct ttgcacggcg tggcacactc caggagaagc 7320 taacctcagt ggcaggtctt gctttccaca gtggagaaga agagtacaac agacttttct 7380 ctccatttgt ggggagtttc gagattccgt catacaggtg ccttcgcctg agatgggtac 7440 acaaaatgtc aaattgaatt gaacataacc aaactaactc cagttttctt atctgaacaa 7500 tttgggacaa ttcggcacaa ttggcaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa 7556 //