ID EU200677; SV 1; linear; genomic DNA; STD; VRL; 5114 BP. XX AC EU200677; XX DT 26-JUL-2008 (Rel. 96, Created) DT 26-JUL-2008 (Rel. 96, Last updated, Version 1) XX DE Porcine hokovirus strain HK7 non-structural protein (NS1), minor structural DE protein (VP1), and major structural protein (VP2) genes, complete cds. XX KW . XX OS Porcine hokovirus OC Viruses; Parvoviridae; Parvovirinae; Tetraparvovirus. XX RN [1] RP 1-5114 RX DOI; 10.1099/vir.0.2008/000380-0. RX PUBMED; 18632954. RA Lau S.K., Woo P.C., Tse H., Fu C.T., Au W.K., Chen X.C., Tsoi H.W., RA Tsang T.H., Chan J.S., Tsang D.N., Li K.S., Tse C.W., Ng T.K., Tsang O.T., RA Zheng B.J., Tam S., Chan K.H., Zhou B., Yuen K.Y.; RT "Identification of novel porcine and bovine parvoviruses closely related to RT human parvovirus 4"; RL J. Gen. Virol. 89(Pt 8):1840-1848(2008). XX RN [2] RP 1-5114 RA Woo P.C.Y., Lau S.K.P., Tse H., Fu C.T.Y., Au W.-K., Tsoi H.-W., RA Tsang T.H.F., Chan J.S.Y., Tsang D.N.C., Tse C.W.S., Ng T.-K., RA Tsang O.T.Y., Zheng B.-J., Tam S.C.F., Chen X.-C., Zhou B., Chan K.-H., RA Yuen K.-Y.; RT ; RL Submitted (10-OCT-2007) to the INSDC. RL Department of Microbiology, The University of Hong Kong, Pokfulam Road, RL Hong Kong, China XX DR MD5; 98ad7a0dd539d2ef3e6c6105c60ce08c. DR EuropePMC; PMC3711170; 24155481. DR EuropePMC; PMC4777746; 26941135. DR EuropePMC; PMC4874618; 26991274. DR EuropePMC; PMC5654489; 28100412. XX FH Key Location/Qualifiers FH FT source 1..5114 FT /organism="Porcine hokovirus" FT /strain="HK7" FT /mol_type="genomic DNA" FT /country="China" FT /db_xref="taxon:494652" FT gene 176..2086 FT /gene="NS1" FT CDS 176..2086 FT /codon_start=1 FT /gene="NS1" FT /product="non-structural protein" FT /db_xref="GOA:B4XXF7" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR014835" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B4XXF7" FT /protein_id="ABY67706.1" FT /translation="MEASCFTAVLHVPKSLCESAAVLFEYPADILSSVPDVIEDWPVTD FT LQSASEYFDIGVNLGRIIYRELLESFAMILPQHRSPKLFLQLEPSSSEEKAFHYHLVAE FT QGNVSGREFSNWLKRWATFLTRHMAPGHSWSILWDIRKTRQGRLYQCDLTFVLRYLLPK FT VPVEHVWYAWTNMERFEAAALSVPARVRCLSEGGAIALPFTGGSGESSGSPSAPTMAGK FT GTERFLNLIDWLVEEGIATERRWLATDKKSYRSFLGSSGGVLQARNALQVARREMVLAR FT PLLGYLRRGGSDIASDNKVTELFRINGYDPEDAAWYFAAWAAGAWAKRRAMWLWGPAST FT GKTLLAAAIAAVAPSYGCVNWTNQNFPFNDCHCQSLVWWEEGRMTENIVEVAKAILGGA FT PVRLDVKNKGSEDFIPTCVIITSNGDLTVTVDGPVVSTAHQEALQTRITMFQFQRLVPP FT GLAPLPERDLRDFFAWGAQLLESKGAPPEQFRVPRRSDKPRLSEIIRSPRLPIAAEERP FT TWSSEDEWFSPNRERPTTPEVPAADESTDVSVSELVSLPFPDLDAPERYQRDFPLDVEA FT AWLDVFVDWAQNLNLRAPGAPRAGSLYRYHQWLSEPWRYRQTLSRTEGYVRSRMYDWIN FT W" FT gene 2240..5017 FT /gene="VP1" FT CDS 2240..5017 FT /codon_start=1 FT /gene="VP1" FT /product="minor structural protein" FT /db_xref="GOA:B4XXF8" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:B4XXF8" FT /protein_id="ABY67707.1" FT /translation="MTAADAFKPGQPFPLDTLMEKLTPDVGPEPSSWSRRMGGGYLASL FT GTGLVFKQAFSHVDKFIRKLPAKVYPVKQFAQQLMNYWRKSTDIKTIGRFFMDLVRLLI FT LVAPEPAKAKLRQSALNLGDFHRPPNPAVLLDLHKFAKDAVVPSAEDIKIFFEESVSPW FT SEEDKKILKQIEGQFQEIFHPPTDTEDGADSYGGNSDQGTGSLSEPDLERPPERPGILV FT PGYNYVGPGNPLDNAPAKGPVDEAAKHHDERYDEMLRHGDLPYIHGRGADRLMNKEIER FT AEQEGKIDNPVDALVGNAIRGIWEAKETLGDIADVQLSQVLPPDPPTSQVLPGSSEDAP FT SPKRQRAGTPDSVPTPGNPSPAPIADPATIMAAPVTGATGGGIKVKAQWLGGTHFSDNT FT IVTSHTRTSMLADRGGYVPVYRSGSHVSDRQPVMGMRTPYSYIDVNAISAHLTPRDFQQ FT LLDEYEEIRPKKLVIGISGIVIKDVSVTTTGTTVSDSASGGITVFSDDAYDYPYVLGHN FT QDTLPGHLPGENYVLPQYGYLTRGREFDKGTDIVGIADHRSELYFLEHHDAECLGSGDT FT WSHAYEFPSDLPFRRLTTPNQSLYARHNPIPPSRLAIMTGVDNSGVPKWKRPAGEDVGK FT HPLNYVPGPSVMMPTDSQIRNTDFRVPLAIGNPVTGDRYSVGPLVHQPWSIRTEEGKSP FT PDNFAIHSYLGGVAYTRRRHEESYTGHTEEMDGSVTNPSRVVVNEVDMAAPHVGHTFMV FT PGHTRVDGSGSGSDTVYDPKLYQEPIFPLFPAAVWNPNPLTYDCQIWTKIPDTECRFFA FT QYPLLGGWGMDAPPPMVFLKMRSQPGPPPGGAHTVPNSNLNQYAIFHLHYTIEWEVKRR FT RRSRRHNPEKPAPFPTTDSGRMPFMLANDDRDPNVPVYEVPSDQWVAQNFSRKL" FT gene 3350..5017 FT /gene="VP2" FT CDS 3350..5017 FT /codon_start=1 FT /gene="VP2" FT /product="major structural protein" FT /db_xref="GOA:B4XXF9" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:B4XXF9" FT /protein_id="ABY67708.1" FT /translation="MAAPVTGATGGGIKVKAQWLGGTHFSDNTIVTSHTRTSMLADRGG FT YVPVYRSGSHVSDRQPVMGMRTPYSYIDVNAISAHLTPRDFQQLLDEYEEIRPKKLVIG FT ISGIVIKDVSVTTTGTTVSDSASGGITVFSDDAYDYPYVLGHNQDTLPGHLPGENYVLP FT QYGYLTRGREFDKGTDIVGIADHRSELYFLEHHDAECLGSGDTWSHAYEFPSDLPFRRL FT TTPNQSLYARHNPIPPSRLAIMTGVDNSGVPKWKRPAGEDVGKHPLNYVPGPSVMMPTD FT SQIRNTDFRVPLAIGNPVTGDRYSVGPLVHQPWSIRTEEGKSPPDNFAIHSYLGGVAYT FT RRRHEESYTGHTEEMDGSVTNPSRVVVNEVDMAAPHVGHTFMVPGHTRVDGSGSGSDTV FT YDPKLYQEPIFPLFPAAVWNPNPLTYDCQIWTKIPDTECRFFAQYPLLGGWGMDAPPPM FT VFLKMRSQPGPPPGGAHTVPNSNLNQYAIFHLHYTIEWEVKRRRRSRRHNPEKPAPFPT FT TDSGRMPFMLANDDRDPNVPVYEVPSDQWVAQNFSRKL" XX SQ Sequence 5114 BP; 1212 A; 1246 C; 1374 G; 1282 T; 0 other; cggttgtgac gtcagttccg gtgacacaat tccggttccg gttgcgtatt tccgcttccg 60 ccggaagatg gcgtggccgg aagatgagct ggccttgtag accacaccta cctcgcctat 120 aagaatcagt gtcagttcct cttccacctc tttcgccgct caccgaggta cagcgatgga 180 ggcgtcctgt ttcaccgcgg ttctgcacgt gcctaagagt ctctgtgagt ctgccgctgt 240 actctttgag tacccggctg atattttgag tagtgttcca gatgtaattg aggactggcc 300 agttactgat ctccaaagtg cttccgagta ctttgatata ggggtcaatc tgggcagaat 360 tatttacagg gagctactgg aatcatttgc catgattctt ccacaacatc gtagccccaa 420 gctttttttg cagcttgaac cctcatcatc tgaggagaaa gcctttcact accatctcgt 480 agccgagcag ggtaatgtgt ccgggaggga atttagcaac tggttgaaga gatgggcaac 540 attcctaact cgccacatgg caccggggca tagttggagc attctgtggg atatcaggaa 600 gaccagacaa gggagactgt atcagtgcga cctgacattt gttttaaggt atctactgcc 660 taaagtacca gtagagcatg tctggtatgc ttggactaac atggagagat ttgaggctgc 720 agccctaagt gttccggcac gcgtccggtg tctctcagag ggtggagcta ttgctctccc 780 gttcacggga gggagcggag aatcctccgg tagccccagt gcccctacca tggctgggaa 840 aggtacggag cgatttttaa acctcattga ctggctcgtg gaggagggca tagccaccga 900 acgacggtgg ttggccacgg ataagaaaag ttatcgctct tttcttggat caagcggtgg 960 ggtgctgcag gcgcgtaacg cgctgcaggt ggctcgaaga gaaatggttc tcgcccggcc 1020 attacttgga taccttcgcc gaggtggcag tgatattgca tcggataata aggtgacaga 1080 gctttttcgt attaatgggt atgatcctga agatgccgcg tggtactttg cagcctgggc 1140 cgcgggcgcg tgggctaagc gacgtgctat gtggttgtgg ggtcctgcta gtacaggaaa 1200 aaccctcctc gcagcagcta tagcagctgt agctccttct tatggctgcg tgaattggac 1260 caatcagaac tttccattca atgactgcca ctgccagtcc ctggtctggt gggaagaagg 1320 gaggatgact gaaaatattg tggaggtggc taaagcaatc ttaggtggag cgccggtacg 1380 gctggatgtg aagaacaagg gttcagagga ttttatacct acctgtgtca taattaccag 1440 caacggcgat ctaacagtca ctgtggatgg gccggtagtc agtaccgccc atcaggaagc 1500 cctacagaca agaataacta tgttccagtt tcagcggtta gtgccacctg gcctagctcc 1560 gttgccagaa agagatctga gagacttttt tgcatggggt gctcagctac tcgagtctaa 1620 gggagcccca cccgaacagt ttcgagtgcc tcgcaggagt gataagccac gcctgagcga 1680 gatcatccga tctccccgtc tgccaattgc tgcagaggaa aggcccacgt ggtctagtga 1740 ggacgagtgg tttagcccga atagggagcg ccccaccact ccggaggttc cggcagccga 1800 tgagtccacg gacgtgtctg tctccgagct ggtgtcgctg ccatttcctg atctggacgc 1860 ccccgaaagg tatcagcgcg atttcccgct tgatgtagag gctgcctggc tggatgtctt 1920 tgtggattgg gcacagaatc taaatctgcg agcccccggg gctccacgag ctggaagtct 1980 ttaccggtac caccaatggt tgtctgaacc ttggaggtac cggcagactt taagccgcac 2040 tgagggctac gttcgttctc ggatgtacga ctggattaat tggtgaatat actgaaatca 2100 agtaagtgac tttcttttgt cttttcttta ttttatcctt gtctgtttat tagggctcca 2160 acggaagaag gcgttggatc ccgtgctgaa caagtggagt gacacgtgtc cctctccatt 2220 tttttgcagg taagaaatca tgacagccgc tgacgccttt aagccggggc aacctttccc 2280 cctcgatacc ctcatggaga aattgacccc cgatgttggc cccgagccat catcatggag 2340 tagacgtatg ggtgggggtt acctggcctc tttaggtacc gggctagtat ttaaacaagc 2400 cttctcccat gtggataaat ttatcagaaa actacctgcc aaggtatatc cagtgaaaca 2460 atttgcacag caattgatga actactggcg gaagtcaact gatatcaaaa ctattgggag 2520 atttttcatg gacctggtca gacttctcat attagttgct cccgaacctg ccaaggccaa 2580 attgaggcag tctgcgctta acttaggtga ttttcaccgg ccgcctaatc cggccgtgtt 2640 gttggattta cacaaatttg ctaaggatgc cgtagtgcct tctgcggagg atattaaaat 2700 attctttgag gagagtgtat ctccttggtc tgaggaagac aaaaaaattt tgaaacagat 2760 tgaagggcag ttccaggaaa tattccatcc acccacagat acggaggatg gagccgatag 2820 ctacggtggc aacagtgatc aaggaactgg ttcccttagt gaaccagacc ttgaacgccc 2880 tcccgagcgc cccggaatct tggtccccgg gtacaattat gttggtcctg gtaatccttt 2940 ggataatgct cccgctaagg gaccagtgga tgaagcagcg aaacaccacg atgaacggta 3000 cgatgaaatg cttcgccatg gtgatttgcc atacatccat gggagagggg ctgataggtt 3060 gatgaataag gagatagaga gggcggagca ggagggtaaa attgataacc ctgtagatgc 3120 attggtgggt aatgcaatcc ggggtatctg ggaggcaaag gagactcttg gggatattgc 3180 agatgttcaa ttatcacagg ttttaccgcc cgacccgcct accagccaag tgcttccggg 3240 ctcttcagaa gacgccccca gcccgaagag acagagggct ggtacccctg attctgttcc 3300 tacgcctggc aacccatccc ctgcgccaat tgctgatcct gctacaatca tggctgcgcc 3360 ggtaacgggc gccaccggtg ggggtatcaa agttaaagct caatggttgg ggggcactca 3420 tttctctgat aataccatcg tcacttctca taccaggact tctatgctgg ctgaccgggg 3480 cggatacgtc ccggtgtacc gcagtgggag ccatgtttcg gaccggcagc ctgttatggg 3540 tatgcggact ccatacagtt atatagatgt aaatgctata tccgctcacc ttacgccgag 3600 ggatttccag caactgcttg atgaatacga ggagattagg cctaaaaagc ttgtgatagg 3660 catatcgggg attgtcatca aagatgtgtc tgtcactacc accggcacta cagtctctga 3720 tagtgcctct ggggggatta ctgtatttag tgatgatgcc tatgactacc catatgtcct 3780 gggacataac caagacacac tcccggggca tttgcccggg gagaattatg ttcttcctca 3840 atatggctat cttactcgag gacgagagtt tgataaggga actgatattg tgggaattgc 3900 tgaccatagg tcagaactgt actttctaga acatcatgat gcagagtgtc tggggtccgg 3960 tgatacatgg tctcatgctt atgagtttcc cagcgacttg ccttttcggc gtttaaccac 4020 gccaaatcaa agtctgtacg cccggcataa tcccattcct ccgtcgcggt tggcgatcat 4080 gacaggggta gataattctg gagttcctaa gtggaaaagg ccagccggcg aggacgttgg 4140 aaaacatcct cttaactatg tccctgggcc gtctgttatg atgcccacag attcacagat 4200 tagaaatact gatttcagag ttcccctcgc aattggtaac ccagttacgg gggaccgcta 4260 cagtgtcggt cccctggtac atcaaccctg gagtatccgc acggaggagg gtaaatctcc 4320 accagacaat tttgctattc actcttacct cggcggggta gcgtatacac gccgccgtca 4380 cgaggaaagt tataccggcc atacagagga aatggacggg tctgttacca acccgtctcg 4440 agtagtagta aatgaggtgg acatggctgc acctcacgtc ggccatactt tcatggtacc 4500 tggccatacc agagtggatg ggagtgggag tggaagtgat acagtctatg atccaaaact 4560 ataccaagaa cccatatttc ccctattccc tgctgctgtg tggaatccca atccattaac 4620 atatgactgt cagatctgga ccaagatacc tgatactgag tgccggttct ttgcgcagta 4680 tcccctactg ggtggctggg gaatggatgc tccaccgcct atggtgtttc tgaagatgag 4740 atctcagccg ggacctccac ctgggggtgc tcatacagtg cctaactcaa atctaaacca 4800 gtatgcaatt tttcacctgc attatactat cgagtgggag gtgaaacgcc gccggcgcag 4860 tagacgccat aaccccgaga aacccgcgcc gtttcctacg acagactccg gccgtatgcc 4920 gtttatgctt gctaatgatg atcgggaccc caatgtacct gtgtacgagg ttccttctga 4980 tcagtgggtt gcccagaatt tctcccgcaa attgtaatgc taaccctaat aaaagattca 5040 ttgctgatgc aacaaagatg tctgacactg attcttatag gcgaggtagg tgtggtctac 5100 aaggccagct catc 5114 //