ID EU194914; SV 2; circular; genomic DNA; STD; VRL; 2761 BP. XX AC EU194914; XX DT 19-NOV-2007 (Rel. 93, Created) DT 20-JUL-2011 (Rel. 109, Last updated, Version 3) XX DE Radish leaf curl virus isolate Pusa Bihar, complete genome. XX KW . XX OS Radish leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2761 RA Singh M.K., Mandal B., Varma A.; RT "Complete nucleotide squence of Radish leaf curl virus isolate from tobacco RT in India"; RL Unpublished. XX RN [2] RP 1-2761 RA Singh M.K., Mandal B., Varma A.; RT ; RL Submitted (06-OCT-2007) to the INSDC. RL Advanced Centre for Plant Virology, Indian Agricultural Research Institute, RL Pusa Road, New Delhi, Delhi 110012, India XX RN [3] RC Sequence update by submitter RP 1-2761 RA Singh M.K., Mandal B., Varma A.; RT ; RL Submitted (19-JUL-2011) to the INSDC. RL Advanced Centre for Plant Virology, Indian Agricultural Research Institute, RL Pusa Road, New Delhi, Delhi 110012, India XX DR MD5; 1e4f60fb9684e1061e21dde2f43237d9. DR EuropePMC; PMC2974675; 20958988. DR EuropePMC; PMC3550817; 23730006. XX CC On Jul 19, 2011 this sequence version replaced gi:160222034. XX FH Key Location/Qualifiers FH FT source 1..2761 FT /organism="Radish leaf curl virus" FT /host="tobacco" FT /isolate="Pusa Bihar" FT /mol_type="genomic DNA" FT /country="India" FT /note="transmitted by whitefly" FT /db_xref="taxon:435646" FT gene 147..458 FT /gene="AV2" FT CDS 147..458 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:G0KUS8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:G0KUS8" FT /protein_id="AEK48287.1" FT /translation="MWDPLVNEFLETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDL FT ISVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAYV" FT gene complement(298..615) FT /gene="AC5" FT CDS complement(298..615) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:G0KUS9" FT /protein_id="AEK48289.1" FT /translation="MGQPSSTSNITNTHNFTYMLNVMSRLKRLDLTWAFTSSRDIRTSV FT HPVHPGLSIHRPVRPCFCFGDADNGGSSTAHIWAVEVETAAYLRSGRGNDYICWSLRHN FT F" FT gene 307..1077 FT /gene="AV1" FT CDS 307..1077 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:G0KUT0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G0KUT0" FT /protein_id="AEK48288.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA FT NRPMYRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLDKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1074..1478) FT /gene="AC3" FT CDS complement(1074..1478) FT /codon_start=1 FT /gene="AC3" FT /product="transcription enhancer protein" FT /db_xref="GOA:A9LJZ2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A9LJZ2" FT /protein_id="ABX11570.1" FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFTMKEDI FT IKVQIQFNYNLRKALGMHKCFLVYRIWMTSQPQTGRFLRVFKTQVLKYLDNLGVISINN FT VIRSVDHVLWNVLQHIVYVEQSYSIKFNIY" FT gene complement(1219..1623) FT /gene="AC2" FT CDS complement(1219..1623) FT /codon_start=1 FT /gene="AC2" FT /product="replication enhancer protein" FT /db_xref="GOA:A9LJZ3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A9LJZ3" FT /protein_id="ABX11569.1" FT /translation="MRSSSPSKAHSTQVPIKVQHRLAKKGNRRRRVDLPCGCSYFISLA FT CHNYGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNRTPQPSIHNERRHNQSPNTVQLQP FT EESVGDAQMFSSLPNLDDFTASDWSFLKGL" FT gene complement(1526..2611) FT /gene="AC1" FT CDS complement(1526..2611) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:A9LJZ4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A9LJZ4" FT /protein_id="ABX11568.1" FT /translation="MPQPKRFLINAKNFFLTYPHCSLSKEETLSQIQNLKTPVNKKYIK FT ICRELHEDGEPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSCL FT EKDGDTLDWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH FT NLNSNLDRIFTPPIEEYISPFSSSSFDQVPDELEEWAAENVVGAAARTLRPMGIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFVTLEGPL FT YSGSNQSAAQASQEGEQTSSC" FT gene complement(2152..2454) FT /gene="AC4" FT CDS complement(2152..2454) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A9LJZ5" FT /protein_id="ABX11571.1" FT /translation="MGNLIFTCSSSSKANTNAKITDSSIWYPQPGQHISIRTFRELNQV FT RTSSPVWRRTETPSTGESFRSMEDLQEGVNRQPMTLTPQRLTQAVSQRLLESLRS" XX SQ Sequence 2761 BP; 760 A; 541 C; 612 G; 848 T; 0 other; accggatggc cgcgcaaatt tttaaagtgg tcccccccac taacttatgt cgcgtaacac 60 gtgggcgaat gaaatgagcc cctcatagct taattgtttt gtggtcccct atttaaactt 120 ccgcagcaag tagtgcattc cgcactatgt gggatccatt agtaaacgag tttcttgaaa 180 ccgttcacgg ttttagatgt atgttagcgg ttaaatatct gcagttagta gaaaagactt 240 attctcctga cacattaggg cacgatttaa ttagggattt aatttcagtt attagggcta 300 gaaattatgt cgaagcgacc agcagatata atcatttcca cgcccgcttc gaaggtacgc 360 cgccgtctca acttcgacag cccatatgtg agccgtgctg ctgcccccat tgtccgcgtc 420 accaaagcaa aagcatgggc gaacaggcct atgtatagaa agcccaggat gtacaggatg 480 tacagaagtc ctgatgtccc tagaggatgt gaaggcccat gtaaggtcca gtcttttgag 540 tctagacatg acattcagca tataggtaaa gttatgtgta ttagtgatgt tactcgtgga 600 actgggctga cccatcgagt gggtaaaagg ttttgtgtta agtctgttta tgttttggac 660 aagatctgga tggatgaaaa tattaagact aagaatcaca cgaatagtgt gatgttcttc 720 ctagttaggg atcgtagacc tgttgataaa ccacaagatt ttggagaggt atttaatatg 780 tttgataatg agcccagtac ggctactgtg aagaatgttc atcgtgatag gtatcaagtt 840 cttcggaaat ggcatgcaac tgttacgggt ggacaatatg cgtcaaagga acaagccctt 900 gtgaagaagt ttgttagggt taacaattat gttgtatata accagcaaga agctggcaag 960 tatgagaatc attctgagaa tgcgttaatg ttgtatatgg catgtactca tgcctctaac 1020 ccagtgtatg ctactttgaa gatacggatc tatttctatg attccgtaac aaattaataa 1080 atattaaatt ttattgaata tgattgttct acatatacaa tgtgttgtaa tacattccat 1140 aaaacatgat caactgatct gattacatta ttaatactga taactcctaa attatctaaa 1200 tattttaaaa cttgagtctt aaagaccctt aagaaacgac cagtctgagg ctgtgaagtc 1260 atccagattc ggtagactag aaaacatttg tgcatcccca acgctttcct caggttgtag 1320 ttgaactgta tttggacttt gattatgtct tctttcattg tgaatggacg gttgtggtgt 1380 tctgttatct tgaaatacag gggattttga atctcccaga taaacacgcc attctctgct 1440 tgagctgcag tgatgagttc cccggtgcgt gaatccataa ttgtgacagg ctagtgatat 1500 gaaatatgaa catccacaag ggagatcaac acgacgacgt ctgttcccct tcttggctag 1560 cctgtgctgc actttgattg gaacctgagt agagtgggcc ttcgagggtg acgaagatcg 1620 cattctttaa agcccaattt ttcaatgcgc tgtttttctc ttcgtccaag aactctttat 1680 agcttgagtt gggtcctgga ttgcagagga agatagtggg aattcctcct ttaatttgaa 1740 ctggctttcc gtacttggta tttgattgcc agtccctttg ggcccccatg aattccttaa 1800 agtgctttag gtagtgggga tctacgtcat caatgacgtt gtaccaggca tcattattgt 1860 agaccttagg actaaggtct aagtgaccac acaggtaatt atgtggaccc aaagacctgg 1920 cccacatcgt cttccccgtt ctactatcac cctctatcac aatacccatg ggtctcaaag 1980 tccgcgcagc ggcaccaaca acattctcag cagcccattc ttcaagttcg tctggaactt 2040 ggtcaaaaga agaagaagaa aaaggagaaa tatattcctc tataggagga gtaaaaatcc 2100 tatctaaatt agaatttaaa ttatgaaact gtaatacaaa atctttagga gctaactcct 2160 taatgactct aagagcctct gacttactgc ctgcgttaag cgctgcggcg taagcgtcat 2220 tggctgtctg ttgaccccct cttgcagatc ttccatcgat ctgaaactct ccccagtcga 2280 gggtgtctcc gtccttctcc agacaggact tgacgtccga acttgattta gctccctgaa 2340 tgttcggatg gaaatgtgct gacctggttg gggataccag atcgaagaat ctgttatttt 2400 ggcatttgta tttgccttcg aactggatga gcacgtgaag atgaggttcc ccatcttcgt 2460 gaagttctct gcagatttta atgtattttt tgtttactgg tgtttttagg ttttgtattt 2520 gggaaagtgt ctcttcttta gagagagagc agtggggata agtgagaaag aaattcttgg 2580 catttattaa aaatctcttc ggttgaggca ttttgaggaa ttctatcggg tcctctcaaa 2640 cttgggctat gtaatcgggg aatgggtcct tatttatagt agaggaccta aatggcatat 2700 ttgtaattag ataaataaat tcaaaatcta tacgctccaa agcggccatc cgtctaatat 2760 t 2761 //