ID EU163411; SV 1; linear; genomic RNA; STD; VRL; 2386 BP. XX AC EU163411; XX DT 15-OCT-2007 (Rel. 93, Created) DT 26-JAN-2009 (Rel. 99, Last updated, Version 2) XX DE Tomato aspermy virus isolate Lucknow UP segment RNA 3, complete sequence. XX KW . XX OS Tomato aspermy virus OC Viruses; Riboviria; Bromoviridae; Cucumovirus. OG Plasmid SKR13 XX RN [1] RP 1-2386 RX DOI; 10.1111/j.1439-0434.2008.01476.x. RX AGRICOLA; IND44147337. RA Raj S.K., Kumar S., Choudhari S., Verma D.K.; RT "Biological and Molecular Characterization of Three Isolates of Tomato RT aspermy virus Infecting Chrysanthemums in India"; RL J. Phytopathol. 157(2):117-125(2009). XX RN [2] RP 1-2386 RA Raj S.K., Kumar S., Choudhari S.; RT ; RL Submitted (19-SEP-2007) to the INSDC. RL Plant Molecular Virology, National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U.P. 226001, India XX DR MD5; 02b2ef5eb21e1616adf7de785610c164. DR EuropePMC; PMC3550809; 23730005. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..2386 FT /organism="Tomato aspermy virus" FT /plasmid="SKR13" FT /segment="RNA 3" FT /host="Chrysanthemum morifolium" FT /lab_host="Nicotiana tabaccum cv. White Burley" FT /isolate="Lucknow UP" FT /mol_type="genomic RNA" FT /country="India" FT /note="synonym: Chrysanthemum aspermy virus" FT /db_xref="taxon:12315" FT 5'UTR 1..191 FT CDS 192..932 FT /codon_start=1 FT /product="3a movement protein" FT /note="facilitates virus movement" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:Q09K08" FT /protein_id="ABW06765.1" FT /translation="MATKCDLGRHHWMRADNAVCVRPLVPETTSNLLTRWFVSRYEAGE FT LPSKGYMSVPQVLCAVTRTVTSDAEGSLRIYLADLGDKERAPIDAQVVSLHNRDLPAIV FT SFHPTYDCPMEQLNGVGRCFALVIERYGYIGHNGTTASVCSNWQPKFSSKNNNYKPAAA FT GKTLVLPYDRLSELSGPSAVARLLKSQLNMSASPYFQLPGIPVAQRAIGSESEDLEKST FT GGQPNARVDSEPQVFSKPVVVNGI" FT misc_feature 933..1227 FT /note="3a movement protein-3b coat protein intergenic FT spacer" FT CDS 1228..1884 FT /codon_start=1 FT /product="3b coat protein" FT /note="capsid protein; involved in encapsidation, aphid FT transmission, long distance movement and host range" FT /db_xref="GOA:A1YQW6" FT /db_xref="InterPro:IPR000247" FT /db_xref="InterPro:IPR023800" FT /db_xref="InterPro:IPR037137" FT /db_xref="UniProtKB/TrEMBL:A1YQW6" FT /protein_id="ABW06766.1" FT /translation="MAQNGTGGGSRRPRRGRRNNNNNNSTARDKALLALTQQVNRLANI FT ASSNAPSLQHPTFIASKKCRAGYTYTSLDVRPTRTEKDKSFGQRSIIPVPVSEYPKKKV FT SCVQVRLNPSPKFNSTIWVSLRRLDETTLLTSENVFKLFTDGLAAVLIYQHVPTGIQPN FT NKITFDMSNVGAEIGDMGKYALIVYSKDDVLEADEMVIHIDIEHQRIPSASTLPV" FT 3'UTR 1885..2386 XX SQ Sequence 2386 BP; 591 A; 555 C; 552 G; 688 T; 0 other; gtttaccaac caaccaacca ctactatcta tctatctgtg tgtgtgtgtg tgtgtgtgtg 60 tgtgtgtgtt gtgtgtgtgt aatcctccta tggtattttc aggtaccagt cggactttaa 120 cacaacagtc ctctgcggca tcaactgatg agctacataa catattattt agccgcagag 180 ccatccaaga gatggcgaca aaatgcgatc tcggtcgcca ccactggatg cgcgccgata 240 atgcggtgtg tgtgcgaccc ctcgttccag aaactacgtc caatctactg acacggtggt 300 tcgtctcccg gtatgaagct ggagagttac catccaaggg atatatgagc gtccctcaag 360 ttctttgcgc cgtcaccaga acagtcactt cagatgctga aggttccctt cgcatatatc 420 tagctgatct tggtgataag gaacgtgcac ctatcgatgc acaagtcgtc agcttacata 480 accgcgatct ccctgccatt gtctccttcc atcctactta tgactgtcct atggaacagt 540 tgaatggagt cggtaggtgt tttgcacttg ttatagaaag atacggttat attggacata 600 acggaactac cgcgagcgtg tgtagtaact ggcaaccgaa gttttcttcg aagaataaca 660 attacaagcc agccgccgca ggtaagactc tagtactacc ctatgacaga ttatctgagc 720 tttcgggacc atcagccgta gccagattac tgaaatcgca gctcaatatg tcagcatccc 780 cgtatttcca gttacctggg ataccggtgg ctcaacgtgc gataggtagt gagtctgagg 840 atcttgagaa atcgacagga ggccaaccta acgctagggt tgattcggaa ccgcaggtgt 900 tttcaaagcc ggttgtggtg aacggtattt gagcctgttg ttatatatat atgtgtattt 960 gtgttatgtg tatagtatat atatacaagt gtaaatcgtt gtgttgtaga ttgatcactt 1020 gagttccatg gattgggaag ggtacacatc tggtttatca aagcccgtga cattactttt 1080 tgggttcaat tcccattagt ccctgtcagg ttcctttatc ttcacggatg cttctccatg 1140 atgtagcgtt taagtatcaa tctgttgttg tttgtgctta aatttttcac ttattgttag 1200 tgtttcacca ctgtcacaca ctctagaatg gcccaaaacg gtacgggagg aggaagccga 1260 cgtccacgtc gtggtcgtcg taataataac aacaacaact cgactgctcg tgataaagct 1320 cttttggctt tgactcagca agtcaatcgc ttagcgaata tagcttcctc taatgcgcca 1380 tccctccaac atccgacttt tattgctagc aagaagtgtc gtgcaggtta tacttacact 1440 tcgttggatg ttcgaccgac tagaactgag aaggacaaga gtttcggtca aaggtcaatt 1500 atccctgtac ccgtgtctga atatcctaag aagaaggtct catgtgtgca agtgagactg 1560 aacccatccc caaagttcaa ttctacgatt tgggtctcgc ttcgtcgtct ggacgaaacg 1620 actcttctta cttctgaaaa cgtgtttaaa ctgttcaccg acggccttgc ggccgtcctt 1680 atttatcaac acgttcccac cggtattcaa cctaacaata agatcacctt cgacatgtct 1740 aatgtcggtg ctgagatcgg cgatatgggt aaatatgccc taatagtcta ttctaaagat 1800 gatgtcctcg aagccgatga aatggtgatc cacattgata tagagcacca gcgtattcct 1860 tccgcttcaa cgctcccggt gtgattcgac acgcatgcac gacgtccgaa gacgttaaac 1920 tacgcttgaa ccgtgttcga gtgtctgagt tggtagtatt gctctaaact acctgaagtc 1980 actaaatgct tatgcagtga acgggttgtc catccagcta acggctaaaa tggtcagtca 2040 tatcgtgaga tatgccgtcg gtctacgtcc gaagacgtta aactacgctt gaaccgtgtt 2100 cgagtgtctg agttggtagt attgctctaa actacctgaa gtcactaaat gcttatgcag 2160 tgaacgggtt gtccatccag ctaacggcta aaatggtcag tcatatcgtg agatatgccg 2220 tcggtctttg atcgatgaga tgcctttgaa ccctttatcc cggggttctt cggaaggtga 2280 gacttgaatt ccatgtagag tctcgccgtg cacggtatca caccgatgat accttcagag 2340 tgcaggcatc gcctacggtt ttccgtaggt ccccctaggg gtccca 2386 //