ID EU127904; SV 1; linear; genomic RNA; STD; VRL; 4431 BP. XX AC EU127904; XX DT 22-SEP-2007 (Rel. 93, Created) DT 22-SEP-2007 (Rel. 93, Last updated, Version 1) XX DE Cucumber leaf spot virus, complete genome. XX KW . XX OS Cucumber leaf spot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Aureusvirus. XX RN [1] RP 1-4431 RX DOI; 10.1016/S0168-1702(97)00105-6. RX PUBMED; 9453144. RA Miller J.S., Damude H., Robbins M.A., Reade R.D., Rochon D.M.; RT "Genome structure of cucumber leaf spot virus: sequence analysis suggests RT it belongs to a distinct species within the Tombusviridae"; RL Virus Res. 52(1):51-60(1997). XX RN [2] RP 1-4431 RA Miller J.S., Damude H., Robbins M.A., Reade R.D., Rochon D.M.; RT ; RL Submitted (30-AUG-2007) to the INSDC. RL Agriculture & Agri-Food Canada, 4200 Hwy 97, Summerland, B.C. V0H 1Z0, RL Canada XX DR MD5; a1509fa1795df58b441137a19445faa4. DR EuropePMC; PMC3554133; 23192876. DR RFAM; RF00171; Tombus_5. XX FH Key Location/Qualifiers FH FT source 1..4431 FT /organism="Cucumber leaf spot virus" FT /mol_type="genomic RNA" FT /country="Canada" FT /db_xref="taxon:165432" FT CDS 132..2348 FT /codon_start=1 FT /transl_except=(pos:798..800,aa:OTHER) FT /product="P84" FT /note="replicase" FT /db_xref="GOA:A8CZ12" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:A8CZ12" FT /protein_id="ABV30916.1" FT /translation="MANMVLSCLVTLILFPFTTMSSLYSLVCRIVNMMLGEIAYLYGDV FT KAGLSFLLKKLTISWIIVVGMILVLSFTVVGFMPSITLYSIILLCIGSKYGGRLPRYIV FT AHYERIKEAWEKGVDDDDCTATPPVECMERIPHKLRPRLACKIAVRAVAKVGLLKRSEA FT NALVYQRVCLDIMESMKMRWHDRLMVLPQAVLACLERPEEVEEVMKAIEASCKGRFDEF FT XGCLLEHRGYNTAVHSVIPDGVLLDHEGMVVRRGLPLSCERKWYSFSSYASTYEYVVHN FT SSLVNVCRGLVERVFCVVRDGKLQRPLRPRKNIFERKLGDVGRKISSIVGFCPAMTRSE FT FCESYSGSRRATYEKARLSLDVLPCTRSDAYLKTFVKAEKINITLKPDPAPRVIQPRDP FT RYNVEVGRYLKPLEPRLMKAIDKLWGERTAIKGYTVEKVGEILYEKSLRFKEPVFVGLD FT ASRFDQHCSRQALEWEHSVYNSIIRDPYLKELLTWQIDNVGTAYLKDGFVRYRVDGCRM FT SGDMNTSMGNYLIMSCLVYQFCKDVGLDASLANCGDDCVLYLEKKQLPLLRHLPNWFES FT MGYSMKVEKPVYNVEEIEFCQQHPVQLSRGWVMVRRPDVCLTKDVCIVRGGMTTDRLQR FT WLYAQRDGGLSLAGDCPVLGQFYNSFPRGESLGELSEYAEAHKFKAGKQYGEITPLSRY FT SFWLAFGLTPDDQLAIEEDLKHWTPEVKLGSEAPRTTLLDYCSR" FT CDS 132..800 FT /codon_start=1 FT /product="P25" FT /note="replicase associated protein" FT /db_xref="GOA:A8CZ16" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:A8CZ16" FT /protein_id="ABV30915.1" FT /translation="MANMVLSCLVTLILFPFTTMSSLYSLVCRIVNMMLGEIAYLYGDV FT KAGLSFLLKKLTISWIIVVGMILVLSFTVVGFMPSITLYSIILLCIGSKYGGRLPRYIV FT AHYERIKEAWEKGVDDDDCTATPPVECMERIPHKLRPRLACKIAVRAVAKVGLLKRSEA FT NALVYQRVCLDIMESMKMRWHDRLMVLPQAVLACLERPEEVEEVMKAIEASCKGRFDEF FT " FT CDS 2374..3534 FT /codon_start=1 FT /product="P41" FT /note="coat protein" FT /db_xref="GOA:A8CZ19" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A8CZ19" FT /protein_id="ABV30917.1" FT /translation="MEIARTNKNSVVKYVPAAVGAAYQMGKSIVPYAPTIVDALGNVVS FT RATGRKKKSKGKEVQNQIVGGIGAIAAPVSITKRVRGMRPSFRQTKGKVHIVHRELVTS FT VINLVGNFRVNNNVSAQIGQFRINPSNSSLFTWLPTIASNFDSYRFTSIRFVYVPLCAT FT TETGRVSLFWDKDSQDPLPVDRAALSSYGHSNEGPPWAETTLNVPTDGKQRFVTDSNTT FT DRKLVDLGQFAFATYAGGSNNQIGDIYVEYGVEFSEAQPAGGLTQYITKSVGATASTTG FT PSYVVDANINVNATTANVEFFSPGTFLITAVVYGSTIASPSMAGGNGTLIGDLPVVGGS FT NASIWTCVFSTTGVSTSVPTFTQAGTGLTRVQYTITRVNSQTAYQV" FT CDS 3615..4346 FT /codon_start=1 FT /product="P27" FT /note="movement protein" FT /db_xref="GOA:A8CZ21" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:A8CZ21" FT /protein_id="ABV30918.1" FT /translation="MEIQHIDGTFEDSLIVQNEVKKFLISHKTTKAILPLAPYSQLTKW FT KIPKAGFYAPIDVKFVLTPHVSERAQVRGVVKLVDSRDLSPSRELYRSKEFNIGHGLLI FT EGSQLPFCLPVGDYPLQFEVTVLQSQFKETANLYSTSVEWRMMSSTTPLSRVKSVMGAA FT HQPAMKLEPNFKMKLESSKGVSHNQKQRKTTKPNGLDRRGRGNSTVGGSSDASQSQGAQ FT AWGGYHNDLGDSLSEYSVSDL" FT CDS 3746..4204 FT /codon_start=1 FT /product="P17" FT /note="suppressor of gene silencing" FT /db_xref="UniProtKB/TrEMBL:A8CZ23" FT /protein_id="ABV30919.1" FT /translation="MENTQGGVLCPNRCKVCSHTTCIRESSGQGGRQASRFTRLITEPR FT IVSEQGIQYRTWIADRGFPIALLSSSGGLSTSIRGHGVAVTVQGDSKSLLNFCRVAYDV FT FNHPVIQSEVCYGRGPSTSDEVRAEFQDEAGIIQGRLPQSETEENNKA" XX SQ Sequence 4431 BP; 1183 A; 909 C; 1146 G; 1193 T; 0 other; gaatacctac tagaccgtct aaccagcgtg tctgagagtt gcgtagccat acgtataggt 60 attctctcct aatttagggg tttgaagact gggtctagct taatagcgga taaattgtaa 120 cttccagtaa aatggcgaac atggtcctaa gttgcttggt tactctgata ctttttccgt 180 tcacaaccat gtcatcattg tattctcttg tttgcaggat tgtgaacatg atgttgggtg 240 aaattgcgta cctttatgga gatgttaagg ctgggttgag ttttctttta aagaaactca 300 ccatctcttg gataatcgtc gtgggcatga tactggtatt gtcattcact gtcgtggggt 360 ttatgccatc cattaccttg tacagcatta ttttgctatg catagggagt aaatatggcg 420 gaaggctgcc acgatacata gttgcccatt atgagcggat taaggaagcg tgggaaaagg 480 gggttgatga tgatgactgc acagccacac cacctgtgga atgcatggaa aggatcccac 540 ataagttacg tccacggctc gcatgcaaga ttgcagttcg tgctgtggca aaggtggggt 600 tattgaaacg gtctgaagct aatgcccttg tttatcaacg ggtctgtctg gacatcatgg 660 agagcatgaa gatgaggtgg cacgaccgtc tgatggtcct acctcaagcc gtgctagctt 720 gcttagaaag gccggaggaa gtcgaggaag ttatgaaagc cattgaggcg tcctgcaaag 780 gacgcttcga tgagttttag gggtgcctac tagaacatcg tggctacaac acggccgtcc 840 acagtgtcat acctgatgga gtgttgttgg accacgaagg gatggtggtt cgaagaggac 900 tgcccctatc atgtgagcgg aaatggtact ctttttctag ttatgctagc acttatgagt 960 acgttgtgca caattcctca ctcgttaatg tttgtagagg tctggttgaa cgagtgtttt 1020 gcgtcgtgcg agacggtaaa ttgcagcgcc ctctaagacc aagaaagaat atctttgaga 1080 ggaagcttgg tgatgttggt cgaaaaatca gctctatcgt tgggttctgc cccgctatga 1140 cacgcagtga attctgtgaa tcttatagcg gctcgcgaag ggccacgtat gagaaagcgc 1200 gattgtcctt ggatgttctc ccttgcacta gatctgatgc ttatcttaag acatttgtga 1260 aagcggagaa gatcaatatc accttgaaac cagacccagc gcccagggtc atacagccac 1320 gtgatcctag gtataatgtg gaagtgggac gttatttgaa gccgttggag ccccgattaa 1380 tgaaagcaat cgataaattg tggggggaaa ggacggcaat taaggggtat actgttgaga 1440 aggtagggga gatcttgtac gagaagagtt tgaggtttaa agaacctgtc tttgtggggc 1500 ttgatgctag ccggtttgac cagcactgct cacgacaggc tttggagtgg gaacactccg 1560 tgtataactc tattattcgt gatccttacc taaaggagtt gctgacatgg caaattgata 1620 atgtgggaac tgcgtatctt aaggatggct ttgtgcgata tcgtgtcgat ggttgcagga 1680 tgtctggtga catgaacacc agcatgggaa actatctgat tatgtcatgc cttgtatacc 1740 aattctgcaa ggatgttgga ttagatgcca gcctcgcaaa ttgcggggac gattgtgtct 1800 tatatctgga gaaaaagcag ttaccattgc ttaggcacct cccaaattgg tttgaatcca 1860 tgggttattc tatgaaagtg gaaaaacccg tgtacaatgt ggaggaaatt gagttttgtc 1920 aacaacatcc cgttcagctc agcagagggt gggtaatggt tagaaggcct gatgtctgtt 1980 taacaaaaga tgtgtgtatt gtccgaggag ggatgacaac tgatcggctt cagaggtggt 2040 tgtatgccca acgtgatggg ggtctcagct tagcagggga ctgtcccgtt ctagggcagt 2100 tttacaactc ctttccacgt ggcgagtccc taggggagtt gtcagaatac gccgaagcac 2160 acaaatttaa ggccggaaag caatatggcg aaattactcc attgtcgagg tactcttttt 2220 ggctggcatt tgggttaacc cctgatgacc agctagctat cgaggaggac cttaaacatt 2280 ggacacctga ggtgaagttg ggaagcgagg cccctcgcac aactttgctg gactattgct 2340 caagataact gaccattatc aagtgagaga agtatggaaa tagcgcgaac taataagaac 2400 agtgttgtga agtatgtacc tgcagcagta ggtgctgctt atcagatggg taagtccata 2460 gtaccttatg caccaacgat tgttgatgca ttaggtaacg tggtatctcg agcaacaggg 2520 cgtaaaaaga aaagtaaagg aaaggaagtt cagaatcaaa ttgtaggtgg tataggagca 2580 attgcagctc ccgttagcat taccaagcgt gtgcgaggaa tgaggccttc atttaggcag 2640 actaaaggga aagtccatat tgtacatcgt gagctcgtta ccagtgtcat taacctggtg 2700 ggcaactttc gggttaacaa taacgtgagt gcacaaatag ggcaattccg tattaatccc 2760 tctaattcct ccctgtttac ttggttacca accatagcat caaatttcga ctcatataga 2820 ttcacatcaa tcaggtttgt ttatgtgcca ctatgtgcta ctactgaaac tggtagggtg 2880 tcattattct gggataaaga ttcacaggat ccccttccag ttgacagagc cgctctaagt 2940 tcctacggac attcaaacga aggtcctcca tgggcagaga ctacactcaa tgtgccaact 3000 gatggcaagc aacgttttgt caccgactcg aatacgactg atcgtaagtt ggttgacctg 3060 ggacagtttg cttttgccac ttatgcagga ggtagcaata accaaattgg agacatatat 3120 gttgaatatg gggtagagtt ctctgaggcg caaccagccg gtggattaac gcaatatatt 3180 acaaagtctg tcggggctac tgcctccacc actggaccta gttatgtcgt agatgctaat 3240 attaatgtta acgccacaac agcaaatgta gaattctttt ctcccggaac cttccttata 3300 accgccgttg tttacggatc cacaatagct tcaccttcca tggcaggtgg gaatggtacc 3360 ttaattggtg atcttccagt tgtgggaggg tcgaatgctt ccatttggac ttgtgtgttt 3420 agcaccacag gggtctctac tagtgtccca acgtttacac aggcgggcac aggcctaact 3480 cgggtgcaat acacgattac ccgtgtaaat tcacaaactg cgtatcaggt ttaagggcga 3540 aagtaggttg gtgtcggaga cttggcaatg tccgagttta gaccttgtgt ggctcaagaa 3600 gtcttaccag cttcatggaa attcaacata tagatggaac ttttgaggac tcattgattg 3660 ttcaaaacga ggttaaaaag tttctaatat ctcataagac aaccaaagcc atactaccat 3720 tagctcccta ctctcaactc actaaatgga aaatacccaa ggcggggttc tatgccccaa 3780 tagatgtaaa gtttgttctc acaccacatg tatcagagag agctcaggtc aggggggtcg 3840 tcaagctagt cgattcacga gacttatcac cgagccgaga attgtatcgg agcaaggaat 3900 tcaatatcgg acatggattg ctgatagagg gttcccaatt gcccttttgt cttccagtgg 3960 gggactatcc acttcaattc gaggtcacgg tgttgcagtc acagttcaag gagacagcaa 4020 atctctactc aacttctgtc gagtggcgta tgatgtcttc aaccaccccg ttatccagag 4080 tgaagtctgt tatgggcgcg gcccatcaac cagcgatgaa gttagagccg aatttcaaga 4140 tgaagctgga atcatccaag ggcgtctccc acaatcagaa acagaggaaa acaacaaagc 4200 ctaatggcct agatcggagg ggtcgtggta atagcaccgt tggtggttct tcggatgctt 4260 ctcagtccca aggcgcacaa gcatgggggg gttaccataa cgatctagga gacagcttat 4320 ccgagtactc tgtgtctgac ttgtagagag accaccaatg cacaccagaa atgggggcta 4380 taagtgtatt ggttcttaat tttcatccct tgcgtggaaa cacgctagcc c 4431 //