ID EU099845; SV 3; linear; genomic RNA; STD; VRL; 4657 BP. XX AC EU099845; XX DT 11-SEP-2007 (Rel. 93, Created) DT 18-SEP-2009 (Rel. 102, Last updated, Version 6) XX DE Rice stripe necrosis virus segment RNA2, complete sequence. XX KW . XX OS Rice stripe necrosis virus OC Viruses; Riboviria; Benyviridae; Benyvirus. XX RN [1] RP 1-4657 RX DOI; 10.1007/s10658-009-9453-z. RX AGRICOLA; IND44224818. RA Lozano I., Morales F.; RT "Molecular characterisation of Rice stripe necrosis virus as a new species RT of the genus Benyvirus"; RL Eur. J. Plant Pathol. 124(4):673-680(2009). XX RN [2] RP 1-4657 RA Lozano I., Martinez A.K., Castano M., Morales F.J.; RT ; RL Submitted (15-AUG-2007) to the INSDC. RL Virology, Iternational Center for Tropical Agriculture, Km17 recta RL Cali-Palmira, Palmira, Valle del Cauca, Colombia XX RN [3] RC Sequence update by submitter RP 1-4657 RA Lozano I., Morales F.J.; RT ; RL Submitted (15-AUG-2008) to the INSDC. RL Virology, Iternational Center for Tropical Agriculture, Km17 recta RL Cali-Palmira, Palmira, Valle del Cauca, Colombia XX RN [4] RC Sequence update by submitter RP 1-4657 RA Lozano I., Morales F.J.; RT ; RL Submitted (14-JAN-2009) to the INSDC. RL Virology, Iternational Center for Tropical Agriculture, Km17 recta RL Cali-Palmira, Palmira, Valle del Cauca, Colombia XX DR MD5; 14d62eae62a8d0c420cb9c55c37baa24. XX CC On Jan 14, 2009 this sequence version replaced gi:198387437. XX FH Key Location/Qualifiers FH FT source 1..4657 FT /organism="Rice stripe necrosis virus" FT /segment="RNA2" FT /host="Oryza sativa" FT /mol_type="genomic RNA" FT /country="Colombia" FT /db_xref="taxon:373373" FT 5'UTR 1..178 FT CDS 179..2197 FT /codon_start=1 FT /transl_except=(pos:725..727,aa:OTHER) FT /product="readthrough protein" FT /note="RT; 74kDa protein" FT /db_xref="GOA:B5ST97" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:B5ST97" FT /protein_id="ACH87093.1" FT /translation="MSYPDWTDTHDVLSYSRWVRTSEAMSAVRTARVSDLSVAPSLGEI FT KAAILSLGDRHNTEDPFVAPYYRFPHHITEKGCTHTYVNLSDNVFKQVLAAIEVCTDKD FT NAVNSAVNVRRDGAINSSSDAKTDKDNIIIGKYQLHQALRRFEELLGSPGNLWNRRKFE FT TQYRLKWVDDRPGRSPAEAXGYGAAALSDLVAAAQSQDMYPGYGPEWNLPPFKHGQPIQ FT TPAPWNEFDLPSYDWIAEETERRKKLKQDGNNLQPAPRLAPSHKTWNPEIFLAVMLALC FT VGAGFPLGWYYRRQLRQCANKIIGYLPRRRRPPRYHVPYTPSELDTFSCGSTKTELSEP FT PAQRAEGRTKQAADWEVTLRRFMVAMDFSLDECDEVVSYFARDEISKALSSNCNDLVLE FT PDGYTLGDAPDIYEPIGLLPIQQEQFVHAESVDPIGEDVAGRSLSGISDYESRMLDLEK FT ERLRLESERITRDLEERRRFDAERLAFEREKADREYQLMLRQDTFIREQGDRTAAAQEA FT FNKQQIELREREISMGSTAGERWGQVGLQTAGSVASGALFYGAMRGAGGLKMPRFSRGP FT NPSSGPRGFQGLRSQSISSGNSQSGSAGGSVARQRSVSLETIPGGSSMRGVQNXGTGSS FT VSGRPNPLTANNSVSDKIGNSNSQLVRLTPINFGPAA" FT CDS 179..727 FT /codon_start=1 FT /product="coat protein" FT /note="CP; 21kDa capsid protein" FT /db_xref="GOA:A7XVN2" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:A7XVN2" FT /protein_id="ABU94740.1" FT /translation="MSYPDWTDTHDVLSYSRWVRTSEAMSAVRTARVSDLSVAPSLGEI FT KAAILSLGDRHNTEDPFVAPYYRFPHHITEKGCTHTYVNLSDNVFKQVLAAIEVCTDKD FT NAVNSAVNVRRDGAINSSSDAKTDKDNIIIGKYQLHQALRRFEELLGSPGNLWNRRKFE FT TQYRLKWVDDRPGRSPAEA" FT CDS 782..2197 FT /codon_start=1 FT /product="52K protein" FT /db_xref="GOA:B5ST98" FT /db_xref="UniProtKB/TrEMBL:B5ST98" FT /protein_id="ACH87094.1" FT /translation="MYPGYGPEWNLPPFKHGQPIQTPAPWNEFDLPSYDWIAEETERRK FT KLKQDGNNLQPAPRLAPSHKTWNPEIFLAVMLALCVGAGFPLGWYYRRQLRQCANKIIG FT YLPRRRRPPRYHVPYTPSELDTFSCGSTKTELSEPPAQRAEGRTKQAADWEVTLRRFMV FT AMDFSLDECDEVVSYFARDEISKALSSNCNDLVLEPDGYTLGDAPDIYEPIGLLPIQQE FT QFVHAESVDPIGEDVAGRSLSGISDYESRMLDLEKERLRLESERITRDLEERRRFDAER FT LAFEREKADREYQLMLRQDTFIREQGDRTAAAQEAFNKQQIELREREISMGSTAGERWG FT QVGLQTAGSVASGALFYGAMRGAGGLKMPRFSRGPNPSSGPRGFQGLRSQSISSGNSQS FT GSAGGSVARQRSVSLETIPGGSSMRGVQNXGTGSSVSGRPNPLTANNSVSDKIGNSNSQ FT LVRLTPINFGPAA" FT CDS 2194..3243 FT /codon_start=1 FT /product="38K protein" FT /note="first triple-gene-block" FT /db_xref="GOA:B5ST99" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B5ST99" FT /protein_id="ACH87090.1" FT /translation="MTSEWAREHPTDVFAIFETCAREAGFTWNDVPPHVVNFDSLEKSK FT AISNLTDLLENEVAKGCKEKGDVAAIKLENVNGMTKEYNARVGVCVGAPGAGKTTLIKA FT VMSKASRVVIAVPNSTLLKNVYSGNPNAFLIDDLFSRPVEFAKYETILIDEFTKVHVCE FT VLMLSALLRVKNILMFGDPQQGMHYRPGSFVYYNFPVLAESHASHRMPQAIGEAYNNAM FT GTKIEPKSSQSGEFEIKDLLGMIRDKSKVLCLSEKTQSNLDDCGISAELVSKVQGCEFA FT AVTLILEEPQDIAPFCNKSIRCVALSRAKEVLIIQATPYFKSMLCNAEFVDPYEVDSSC FT SGQTLCNSR" FT CDS 3243..3596 FT /codon_start=1 FT /product="12K protein" FT /note="second triple-gene-block" FT /db_xref="GOA:B5STA0" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:B5STA0" FT /protein_id="ACH87091.1" FT /translation="MSGQYVSARPNKFIPICICIGVVCVAVCLVLATPRHKTHSAGDYG FT VPTFANGGSYADGTRRAKFNCNNDRAYGSSQPQMSSNFVAFIAVILLVAFALRSCNSVG FT NCGERCNGGCCKN" FT CDS 3574..3975 FT /codon_start=1 FT /product="15K protein" FT /note="third triple-gene-block" FT /db_xref="GOA:B5STA1" FT /db_xref="UniProtKB/TrEMBL:B5STA1" FT /protein_id="ACH87092.2" FT /translation="MVAVVRIDWSEIVLCDHGGIVVVTMVFLWSTVQRHEPPPGVAGAM FT PYGGLELNRASLNVYNHPSFDSAAAIKEMGKIADALVLMNRDDSIMMAGLSPIYGGFQV FT VCNIISRVFWLVVVIFWFIVVPCWFWCHK" FT CDS 3972..4433 FT /codon_start=1 FT /product="Cys-R protein" FT /note="ORF6" FT /db_xref="UniProtKB/TrEMBL:B8PS18" FT /protein_id="ACL81238.1" FT /translation="MSRSLLSTVNIHVLVDGKLVYSFAVRGPWCNGSVTNRVVQYLPGN FT STNASSASRALSFRWSCIVCGSHVGDIKKYIRLHRRLLRNNYCRMQHKFTFTEVCTSCM FT CTYGLKVPCVEAPITARPAKDGSEHVVKTEGTMDCSEVVPDSDTSSDSD" FT 3'UTR 4434..4657 XX SQ Sequence 4657 BP; 1141 A; 969 C; 1151 G; 1394 T; 2 other; tatcactact gacgaattcc acctacgtta gttaatcgat atctggccgt ggcaccattc 60 ttcaccgaca cctcccttaa atttggttgt cagaagcgtg cgggtgtcca ccgtaagatt 120 tttcgaataa ctatctggtg ttatttctca aactttatca taatatcatc ttgtcgagat 180 gagttatcca gattggacag acactcatga cgttctttcc tattctaggt gggttagaac 240 gtctgaggct atgtctgccg tgcgaacagc acgtgtatcc gacttatctg ttgccccatc 300 tttgggggaa atcaaagcag caattttatc tttgggtgac cgccataata ctgaggatcc 360 ctttgtggca ccttattaca gatttcccca tcatatcact gaaaaggggt gtacccatac 420 ttacgtcaac ctaagcgaca atgttttcaa acaagtgttg gcagctattg aagtttgcac 480 tgataaagac aacgctgtta attccgctgt taatgttagg agggacgggg ctatcaattc 540 atcatccgac gccaaaactg ataaggacaa tattatcatt ggaaaatatc aacttcatca 600 agctcttaga cgttttgaag aacttcttgg ttccccaggc aatctatgga atcgtaggaa 660 atttgaaact cagtacaggc ttaagtgggt tgacgaccgt ccaggtcgtt cgccagcgga 720 agcatagggg tacggggcag cggcactcag tgatctggtt gcagctgccc aatcacagga 780 catgtaccca gggtacggtc ccgaatggaa tcttcctccc tttaagcatg gacaaccgat 840 tcaaactcct gcgccttgga atgaatttga tttgcctagt tatgattgga tagcagagga 900 aacggaacgg cgtaagaaac tgaaacagga tggtaataat ctacaaccgg ctcccaggtt 960 agcacctagt cacaaaacat ggaatcccga aatatttctt gctgttatgc tggctttatg 1020 tgtcggggct ggttttcctt taggttggta ttatcgcaga caattgcgac agtgtgcaaa 1080 taaaatcatt ggttacctcc ctagacgtcg acgtccacca cgttatcatg ttccttatac 1140 cccttcagaa cttgatacct tttcttgtgg ttcaaccaag actgaactca gcgaaccacc 1200 agctcaacgt gcagagggcc gtacaaaaca ggccgcagat tgggaagtta ctttgcgaag 1260 gtttatggtc gccatggatt tttctctgga cgaatgtgac gaagttgtct cctatttcgc 1320 tcgagacgag attagtaagg ctctgtcatc caactgcaac gatttggttt tggaaccaga 1380 cgggtatacc cttggggacg ctcccgacat atatgaaccc attggacttc tcccgattca 1440 gcaagagcaa tttgttcatg ctgagtcggt tgatcctatt ggtgaagatg tggcgggacg 1500 ttcactttct gggatttcgg actacgagag ccgaatgttg gatttggaga aagaacgtct 1560 tcgacttgag agtgaacgca tcactcggga tcttgaggag cggcgtcggt ttgatgcgga 1620 aaggttggct ttcgaacgtg agaaggctga ccgggagtat cagctgatgc ttaggcagga 1680 caccttcatc cgagagcaag gagataggac tgcggccgcc caggaagcct tcaataagca 1740 acagatcgaa ctgcgtgagc gtgaaatctc catgggtagc acagccggcg aacgctgggg 1800 ccaagttggc cttcagaccg ctggttctgt tgctagtgga gcccttttct acggtgctat 1860 gagaggtgct ggtggtttaa agatgcctag attctcacgt ggtcccaatc ctagttccgg 1920 cccccgtggg tttcagggtt tgaggtctca atcaatttca agcggaaatt ctcaatcagg 1980 ttcggctggc ggctcagttg cacgccaaag gtctgtttca ttggaaacca ttccyggtgg 2040 ttcgtcaatg cgtggtgttc aaaataytgg tacaggatct tctgtatctg ggcgtcccaa 2100 tccactgact gcgaataatt cagtttctga taaaattggt aatagcaatt cgcagttggt 2160 aaggttaacg cctatcaatt tcggtcctgc agcatgacgt ctgaatgggc acgcgaacat 2220 cccaccgatg tcttcgccat ctttgaaact tgcgctcgag aggccggttt tacttggaac 2280 gatgtccctc cccatgtcgt caactttgac agcttggaga agagcaaagc tataagtaat 2340 ttaaccgatc ttcttgaaaa cgaggttgct aagggttgca aagagaaagg tgatgtcgct 2400 gccattaaat tggagaatgt gaacgggatg actaaggaat ataatgctcg tgttggggtt 2460 tgtgtcggtg ctcccggtgc gggaaagact actctgatta aggcggttat gtctaaggct 2520 tctcgtgttg tcattgctgt tccaaattcc acactcctga aaaatgttta ttccggaaat 2580 ccgaatgcct ttctcattga tgatttgttt tcaagacctg ttgagtttgc caaatatgaa 2640 actatcctta tcgacgaatt caccaaggtt catgtgtgtg aggttcttat gttgtctgct 2700 ttactgaggg tcaagaatat tcttatgttc ggcgatcccc agcagggtat gcattatcgt 2760 cctggctcat ttgtgtatta taactttccg gttcttgctg aaagtcatgc tagccatcgc 2820 atgcctcagg ctatcgggga ggcttataac aatgccatgg gaacgaaaat agaacctaag 2880 tcttctcaat ctggtgaatt tgagattaag gatctgcttg gtatgatccg tgacaaatct 2940 aaagtcttgt gtttgagtga gaaaacccaa agtaatcttg atgattgtgg tatttcggcc 3000 gagcttgttt ccaaagttca ggggtgtgag tttgctgcag ttactctcat tctcgaggag 3060 ccacaggaca ttgccccttt ttgcaataag agtattcgtt gtgtggccct ttctcgcgcc 3120 aaggaggttc ttattatcca ggcaacacct tacttcaagt ccatgctttg caatgctgaa 3180 ttcgtcgatc cttatgaggt ggattcttca tgtagtgggc aaactttatg taattcaaga 3240 taatgtctgg acagtatgtt tccgctcgcc ctaacaagtt tattccgatt tgtatttgta 3300 ttggtgttgt atgtgtagct gtgtgtttag tcctggccac tccgcggcac aaaactcatt 3360 ccgctggtga ttacggcgtg cctacctttg caaacggcgg gtcctatgct gatggaaccc 3420 gtcgagctaa attcaactgt aataacgata gagcttatgg ttcctctcaa ccgcaaatgt 3480 cttccaattt tgtcgcattc attgctgtca tacttttggt tgccttcgcc ttgagaagct 3540 gtaattctgt cggtaattgt ggtgaacgtt gcaatggtgg ctgttgtaag aattgattgg 3600 agtgagattg tgctgtgtga ccatggtggc attgtcgtag ttactatggt tttcttatgg 3660 tccactgttc aacgccatga accaccaccc ggtgttgctg gtgcaatgcc gtatggtggt 3720 ttggaattga atagagcgtc gttaaatgtt tataatcatc ctagttttga ttctgccgca 3780 gctatcaagg aaatgggtaa gatcgctgat gctcttgttt tgatgaacag agatgattct 3840 atcatgatgg ctgggcttag tccgatctat ggtggttttc aagtagtgtg taatataata 3900 tctcgggtct tttggcttgt agttgttata ttttggttta ttgtggttcc ttgttggttt 3960 tggtgccata aatgagtaga tcgcttctgt cgactgtgaa catccatgtc ttggttgatg 4020 gaaagcttgt atactctttt gcggtacgtg gtccttggtg taatggtagc gtcacaaatc 4080 gtgttgtgca ataccttcct ggtaatagca caaatgcctc ctcagctagc cgtgccttgt 4140 cttttcgctg gagctgcatt gtttgtggtt cacacgttgg tgatatcaag aagtatatac 4200 gactgcatag gcgtttgttg cgcaacaact actgccgaat gcagcataag ttcacgttca 4260 cggaggtgtg cacttcctgc atgtgtacat acggactgaa agtaccgtgt gtcgaagccc 4320 caataactgc acgcccggca aaggacggtt ctgagcatgt tgtcaagact gaagggacta 4380 tggattgttc tgaagttgtt cctgattcag acacctcttc tgacagtgat tagttccaaa 4440 gtcttatgga ggtaatgcga tatatgtgta gttgtgtgtc gtaatcataa atatataaat 4500 aaatgaatag tgttaagagg ctaatatcaa gttgacggac ctcccatcgg gtagctccga 4560 gggtttacgt catgttggtc gtaatgtact gattgggtgt gagttgtacc atcggaggtt 4620 tactatccgg gaaaaaaaaa aaaaaaaaaa aaaaaaa 4657 //