ID EU099844; SV 3; linear; genomic RNA; STD; VRL; 6634 BP. XX AC EU099844; XX DT 11-SEP-2007 (Rel. 93, Created) DT 18-SEP-2009 (Rel. 102, Last updated, Version 4) XX DE Rice stripe necrosis virus segment RNA1, complete sequence. XX KW . XX OS Rice stripe necrosis virus OC Viruses; Riboviria; Benyviridae; Benyvirus. XX RN [1] RP 1-6634 RX DOI; 10.1007/s10658-009-9453-z. RX AGRICOLA; IND44224818. RA Lozano I., Morales F.; RT "Molecular characterisation of Rice stripe necrosis virus as a new species RT of the genus Benyvirus"; RL Eur. J. Plant Pathol. 124(4):673-680(2009). XX RN [2] RP 1-6634 RA Lozano I., Morales F.J., Martinez A.K.; RT ; RL Submitted (15-AUG-2007) to the INSDC. RL Unit of Virology, CIAT, Km17 Cali-Palmira, Cali, Valle del Cauca, Colombia XX RN [3] RC Sequence update by submitter RP 1-6634 RA Lozano I., Morales F.J.; RT ; RL Submitted (14-AUG-2008) to the INSDC. RL Unit of Virology, CIAT, Km17 Cali-Palmira, Cali, Valle del Cauca, Colombia XX DR MD5; 719acfbc505376c7ba90add9d8bcf1a1. DR EuropePMC; PMC6197668; 30346992. XX CC On Aug 14, 2008 this sequence version replaced gi:196123611. XX FH Key Location/Qualifiers FH FT source 1..6634 FT /organism="Rice stripe necrosis virus" FT /segment="RNA1" FT /host="Oryza sativa" FT /mol_type="genomic RNA" FT /db_xref="taxon:373373" FT CDS 124..6426 FT /codon_start=1 FT /product="replication-associated protein" FT /db_xref="GOA:A7XVN0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR008746" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A7XVN0" FT /protein_id="ABU94739.2" FT /translation="MACLTAYEIALLSEREDEFLRGLENNFSPDAMEAIAYGMTCYAQW FT VDDFKRFNARVKIGGLLSAAYRKRISQFTGPISAEVLRNILIEIAAIASNARVCATRVR FT LSGLLFDRASNLIHVGAKHMSTLQACITDLNIAVSCQSSGVPYLVGAISAAHMQEMARA FT SEGANVASADMIESYQMEVKASTTITLMLNASEKAILQRELGYVPLYKPRGKPPRDHAV FT LAALREAIRQDYDATYGVARTSIKTLVVGAAAREVKRYCSNPMVHYHFSASEPKDMNRI FT AIEFLKESTRTKIANMERQEKELMRALRDGGYIVTKRVENTNFEYERVASGDLENIVEI FT AKGLAASKRTSKQLKGMRVRPAPGALYTDSVRKTLEFMTIAKDVAEENKIPDHFLFTKP FT DCAVTGQVYTQLVFEDVGYNFSPEDWLDWFARTDAKFGVGYMALPIQLMCDTYPQSDYY FT NYFEMDAYSSLLADSKGKLTMHPVPNYQADYGVASSWEGDIDGYAEIFGADKIWHGSKR FT ISMMSGSSDNGYAHLKECWGTLFRSPVISDKRFPFSLEVNLVRGYGCLAMFRLTRVDRA FT SFIFRTIALRPEEEYVLILDLPKVARAYEKKGIAAMADPLPYFPVMKYEFDVSVAYGVA FT IAERSLSIQNFCSFTRSHISGVSLVTKELVAKWRLPLGQLPEFSYAVYYYTMFLRGHCQ FT KVIDEVANRELNWAKKLQVAVSNLAQNILEPVSFLWTWLFVRKMADQIVKTPTQKVYQF FT DATKKNMYIPHFGDGWEKHAELTNSFLDPGCTLPEGITVDEWMEMPEDVRVLHALNVSG FT ATEQHIADYKGVSILQAMASIPLNALTSPLENFLSNGGKLRNDEDLAEALRAQYKWQSG FT KLTRCMVCTMLNGNAGSQVIECHHKLDSSYTFEMSQKEIDDLRNDMLQESNLQGNEFGA FT LLKRVRKLIPIAPFKKTVRLEYIKGVPGTGKSFLIRALADPVRDLVVAPFLKLRSDYQN FT QGPVGGETTWNFHTQHKALEQSGKLTIFVDEFTAYDWRLLAVLVHRCGAETVYLVGDEQ FT QTGIRESENEGISILNKLKPSDYSMHVPLFNYRNPRKDVSVINHLFGTRMIPVSDVVSG FT FVNRPLSEFQPLVSDPECRYKIIHYTEATGRALLAGMTTELKTTVRSNQGSTHDYVALP FT VTVADAPLLRNEQLNLVAISRHKKEMIIFTDVGSESAGHGLAKSLVMPPEAVQASDYNL FT RLYLGLETPQKGKFATSESEFAASFRKLVERYNGYLAPGEENDAPSGVIPRRVIDVAKV FT KNELAGQYKTVDFDLAARDNNCLVVALALALNTTFDVIKAKMLASSEIKAFCTWARSSR FT MSTWDDCIMFAKGLRVAIQLQVTKPSGTSVLSFGDSDVNVVLAYEEHKKGEGHFSYVKP FT KPQPEPIVDILDDKRITLRNGQFEIEEVEIPPAVNHDVVLHDNGFSVHPTLEEPVLHIE FT TAESRVTEIEEVIEQEPEQVEIDLKDDASIQSVDSHDSLKNLLQNEYSDQFANWVCFSE FT SFEGIYGGKRKEPVRGVRATTVDELPQRFVDYATEFVPRMLSAIPANVHIPGTQYPEAR FT VQPVYDAYTLLRDFDLYNGALEYDRDYFNQSAANVVGDKFVTGVVSGDIISPLNLRGHP FT VNTIQTYRSLMVGPSQLYFKNNRFQELQVQQARYLFRKVSMLPSFQMQKIARMVATNFV FT TECLTPNIADVFRNDNLDKIVERALADMVIKNYSAQMDVEYTVNARVYRFQLKDIEKPV FT KEPTVDMAKAGQGILAWSKEAHVKFMIAFRVLNDMLLKSVKENVVYDNGMSEKEFTDKI FT NSAMSSVPGVAVNGVIDAAACDSGQGPFTQLVERYIYELMGISDFFLDWYFSFREHYIM FT QSRYVRAHMTYVKTSGEPGTLLGNTILMGALMNSFLRGDGPFCMAIKGDDGFKRQMNLR FT VNKDIVQAVKDFTPLEFKLDINVPLTFCGYALVGGAMYPNIVRKAIKISTHRFKSYEHF FT TEYQESLRDWLNSLLKDPINRAIFLHVNAELAGKGMNDMQRVLDSITSVASISRSQFEE FT GFQERTTDVGEIPVFNGQDRTCLDTKIVTAFGDPVDVFIRKNARADLNE" XX SQ Sequence 6634 BP; 1754 A; 1277 C; 1593 G; 2010 T; 0 other; catagacgaa acgaaatcgg accgaccccg ggagtggccc attatactga catcattaaa 60 gaaagttcag tgagagcggg ttcacctaag gtaacggcga agagtatcgt ttcaacttct 120 ccaatggcgt gtcttacagc gtatgagatt gctcttttat ccgagcgtga agatgaattt 180 cttcgcggcc ttgagaataa tttctcccct gatgctatgg aagctattgc ctatggcatg 240 acttgctatg ctcagtgggt ggatgatttc aagaggttca acgctagggt gaaaatagga 300 gggttgctga gtgcagcata ccggaagcgc atttcccagt tcactggccc tatcagtgcg 360 gaagttctta ggaacatcct tattgagatt gcagcaattg ctagcaatgc tagggtttgt 420 gctactcggg ttcggttgtc tggtcttctc tttgataggg ccagcaactt gattcacgtt 480 ggtgctaagc atatgtcgac actgcaggct tgcatcaccg atttgaatat agcagtgtca 540 tgtcaatcgt ctggagttcc ttatttggtt ggtgctatct ctgcggcgca tatgcaagaa 600 atggcaaggg caagcgaagg tgctaacgtt gctagtgccg acatgattga atcttaccag 660 atggaagtca aagcctccac tactatcact ttgatgttga atgcatctga gaaagctatt 720 ttacaacgtg aactggggta tgtgccattg tacaaacctc gaggcaaacc cccgcgggat 780 cacgctgtac ttgctgcgtt gcgcgaggca ataaggcagg attatgatgc aacttatggt 840 gtggctagga cgtctatcaa aactttagtt gtcggtgctg cggctcgtga ggtaaaacgt 900 tattgttcga atcctatggt tcactatcat ttttctgcct ctgagcctaa agatatgaat 960 cgcattgcca tcgagttttt aaaggagtct acaaggacaa aaattgccaa tatggaacgt 1020 caggagaaag aacttatgcg cgcgcttaga gatgggggtt acattgttac taagagagtt 1080 gaaaacacca actttgaata tgaacgtgtg gcttcaggcg atttggagaa catagtggaa 1140 attgcaaaag gcctggcggc ttccaaacgc accagtaaac aacttaaagg aatgcgggtt 1200 aggccagcgc ccggtgcgct ttacactgac tctgttagga agacactgga atttatgact 1260 atagccaagg atgttgctga agagaataaa atccccgacc attttctatt taccaagcca 1320 gattgtgccg ttacaggaca agtctacacc caacttgttt ttgaagatgt tggctataat 1380 ttttcccccg aggattggtt ggattggttt gcccgtaccg atgctaaatt tggtgtcggt 1440 tatatggctt tgcctattca actaatgtgc gacacgtatc cgcagtctga ttactataac 1500 tattttgaga tggatgcata tagttctctc cttgctgata gcaagggtaa gctaaccatg 1560 catcctgttc ctaattatca ggccgattac ggagtcgcca gttcttggga gggagatata 1620 gacggttatg ctgagatttt tggtgcagac aaaatttggc atggtagtaa gagaatttcc 1680 atgatgtctg gttcttcgga caatgggtat gcccacttga aagagtgttg gggaacattg 1740 tttagatctc ctgttatttc tgataaaagg tttccttttt ctcttgaggt caaccttgtt 1800 cgaggctatg gttgtttggc tatgttcagg cttacccgcg tcgatcgtgc tagttttatt 1860 ttccgcacca ttgcactgcg tcctgaagag gagtatgtcc tgattttgga tttgcctaaa 1920 gtggctcgcg cctatgaaaa gaaaggaata gctgctatgg ccgacccttt gccttacttt 1980 ccagttatga agtacgagtt tgatgtcagt gttgcatacg gtgttgctat tgccgaaaga 2040 tcgttgtcga ttcaaaactt ttgttctttc acccgttcac atatttcagg tgttagtttg 2100 gttactaagg agcttgtggc gaaatggaga ttgccgctgg gtcaattacc tgaattttca 2160 tatgcggtgt attattacac tatgttctta cgtggtcatt gtcaaaaggt tattgatgaa 2220 gtggcgaaca gggagcttaa ttgggcgaag aaacttcagg ttgctgtttc taatcttgca 2280 caaaatatat tggaacctgt ttccttcttg tggacatggt tgtttgttag gaaaatggct 2340 gatcaaattg tgaagactcc cactcaaaag gtttatcaat tcgatgccac caaaaagaac 2400 atgtacatcc ctcattttgg agacggttgg gagaaacacg ctgagctcac taattccttc 2460 ctcgatcctg gttgtacctt acctgaagga atcaccgttg acgaatggat ggaaatgcct 2520 gaagatgttc gtgttctaca tgctttgaat gtgtctggtg ccacggaaca acacattgct 2580 gattacaaag gtgtcagcat tttgcaggct atggcttcaa ttcctcttaa cgctctgact 2640 tctcctctgg aaaatttttt atcaaatgga ggaaagctgc gtaacgatga ggatttagcc 2700 gaagctttga gggctcaata taaatggcag tcaggcaagt tgactaggtg tatggtgtgc 2760 actatgttga atggtaatgc gggtagtcaa gttattgagt gtcatcacaa acttgattcc 2820 agttacactt ttgaaatgtc ccagaaggag atagacgatc tgagaaacga tatgttgcaa 2880 gaatcaaacc ttcaaggtaa tgaatttggt gctctcttga agcgtgttcg caagttaatc 2940 ccaatagctc ccttcaagaa aactgttcgt ctggagtata ttaagggcgt tcctgggact 3000 ggaaaatcct ttctgattcg tgctttagcc gatcctgttc gcgacctcgt tgttgccccc 3060 tttttgaagc tgcgtagcga ctatcagaat caaggacccg tgggtggaga gacgacttgg 3120 aattttcata cccaacacaa agctctggag caatcaggta aacttacgat ttttgttgac 3180 gagttcacag cttatgactg gaggcttttg gctgtacttg tgcataggtg tggtgcagaa 3240 acagtttacc tcgtcggtga cgagcaacaa actggtatcc gcgagtccga aaatgaaggt 3300 atatcaattt tgaataagtt gaaaccttcg gattattcca tgcatgtgcc gttgttcaac 3360 tatcggaatc cgagaaaaga tgtgtccgtc atcaatcatt tgtttggaac cagaatgatt 3420 cctgtgtctg acgttgtttc tgggtttgtt aaccgtccac tgtctgaatt tcaaccactc 3480 gtctctgatc ccgaatgtcg ttacaaaatt attcattaca cggaggcgac tggaagggct 3540 ctgctagcag gtatgactac cgagttgaaa acgacggtgc ggtctaatca gggttctacc 3600 catgattatg tcgcgcttcc tgtcaccgtt gccgatgccc cattgcttcg gaatgagcag 3660 ttgaatttgg tcgccatttc tagacataaa aaagaaatga tcatatttac tgatgttgga 3720 agtgagtctg ctggtcatgg gttggccaaa tctcttgtca tgccgcctga agcggtccag 3780 gcctctgatt ataatttacg attgtattta ggtctggaaa cgccacaaaa agggaaattt 3840 gcgacttctg aatctgaatt tgcggccagt tttagaaagt tggttgaaag gtacaatgga 3900 tatttggctc ctggagaaga aaatgacgca ccatctggtg tcatccccag gagggttatt 3960 gatgttgcca aggttaaaaa tgagcttgct ggtcagtaca aaacggttga ttttgatctt 4020 gccgcgagag ataacaattg tttggttgtc gctctcgctc ttgctctgaa caccactttt 4080 gatgtcatta aggcgaagat gttagcgtct tctgaaatta aggccttttg tacatgggcg 4140 cggtcttccc gtatgtcaac atgggacgac tgcatcatgt tcgctaaggg gttacgtgtg 4200 gccattcaat tgcaggtcac taaaccttct ggcacatctg tccttagttt tggagattct 4260 gatgtcaacg tcgtgttggc ttatgaagaa cataagaaag gggaaggtca tttcagttat 4320 gttaagccca agcctcaacc agaaccaatt gtcgacattt tggatgataa aagaatcaca 4380 ttacggaatg gtcagttcga aattgaggaa gttgaaattc ccccagctgt gaatcatgat 4440 gttgtactgc atgacaatgg tttttcggtt caccctactt tggaagaacc agtgttacac 4500 attgagactg ctgagtctag agtgaccgag attgaagaag tgatcgagca ggaacccgaa 4560 caagttgaaa ttgatcttaa agacgatgct agtatccagt ctgttgattc tcacgattct 4620 ttgaagaatt tgttacaaaa cgaatattcc gaccagttcg ctaattgggt atgtttctct 4680 gagtcttttg agggtattta tggcggaaaa cgcaaggaac cagttagagg ggttcgtgcc 4740 accacagttg acgaattacc tcagcgcttt gtggattatg ctaccgagtt tgtccctaga 4800 atgttgtcag ccattcctgc aaatgtccat attccgggta ctcagtaccc cgaggctcgt 4860 gtccaacctg tgtatgatgc ctatactctc cttagagatt ttgatctcta taatggtgcg 4920 ttggaatacg atcgcgacta ttttaatcag tctgctgcca atgttgttgg ggacaaattt 4980 gtcactggag ttgtgtctgg cgatatcatt tcaccattga atttgagggg acatccggtt 5040 aacacaattc agacgtacag atctcttatg gttggtccgt cacagttata tttcaagaat 5100 aaccggtttc aagagttgca agttcaacaa gcaaggtatt tgtttaggaa agtttccatg 5160 ttgccctctt ttcaaatgca aaaaatagct agaatggttg ccactaactt tgttactgag 5220 tgtttgactc cgaacatcgc agatgtcttc agaaatgata atctcgacaa aattgtggaa 5280 agggcgcttg ctgatatggt cattaaaaat tattctgccc aaatggacgt ggagtacact 5340 gtcaacgcca gagtttatcg ctttcaactt aaggacattg aaaagcctgt caaagaaccc 5400 actgttgaca tggccaaagc tggtcagggc attcttgcct ggtccaagga ggctcatgtc 5460 aagtttatga tcgctttccg tgttttgaac gatatgctat taaaatctgt caaagaaaat 5520 gtggtctatg acaatgggat gtcagaaaag gagtttactg ataaaatcaa ttcagctatg 5580 agttctgttc ccggggtcgc tgtcaatggt gtcattgacg ctgctgcttg cgattctggt 5640 caaggtccct ttacccagtt ggtcgagagg tatatttatg aacttatggg catctctgat 5700 tttttcctag actggtattt ctcttttaga gaacattaca ttatgcaatc taggtatgtt 5760 agggcacaca tgacgtatgt caaaactagt ggggaacctg gaaccttatt gggcaacacc 5820 attcttatgg gagcacttat gaattccttt ttaagagggg atggcccttt ttgtatggcg 5880 atcaagggtg acgatggttt caaaagacaa atgaacttgc gtgttaataa agatattgtc 5940 caagctgtta aggactttac ccctttggaa tttaaattgg atattaatgt tccgctgacg 6000 ttttgtggtt acgctcttgt tggtggcgca atgtacccaa atattgttcg caaggcgata 6060 aaaatttcta cgcatcgatt caagtcttac gaacatttca cagagtatca agagtccctc 6120 agagattggt tgaacagttt gcttaaagat cccattaata gggctatatt tttacatgtt 6180 aatgcagaac ttgccggaaa aggaatgaat gacatgcaac gtgttttgga ttctatcacg 6240 tcggtagctt ccatttcacg ttcccaattc gaagaaggtt tccaagaaag aacaacagat 6300 gttggtgaaa tacctgtgtt caatggtcaa gatcggactt gtttggatac taagattgta 6360 acagcctttg gtgaccctgt tgatgtgttt ataaggaaaa atgccagggc tgatttaaat 6420 gagtgaatgt tctactctaa ttacgataat gcaatattaa atgaataacc aatttgtggg 6480 ttttaaaacc ctctggtcta gatgttggga ccacctagga ggtgatactc tgggtttagt 6540 cgacatcgtg gagttgggtg tactgagtgt gagttgtatc agtatttatt agcccgtttg 6600 tgtgtctata cacaaaaaaa aaaaaaaaaa aaaa 6634 //