Dbfetch
ID EU086591; SV 2; circular; genomic DNA; STD; VRL; 2590 BP. XX AC EU086591; XX DT 19-AUG-2007 (Rel. 92, Created) DT 03-JUN-2009 (Rel. 101, Last updated, Version 3) XX DE Tomato severe rugose virus strain Sumare segment DNA-A, complete sequence. XX KW . XX OS Tomato severe rugose virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2590 RA Barbosa J.C., Firmino A.C., Bergamin Filho A., Barreto S.S., RA Inoue-Nagata A.K., Rezende J.A.M.; RT "Natural infection of Nicandra physaloides by Tomato severe rugose virus in RT Brazil"; RL Unpublished. XX RN [2] RP 1-2590 RA Barbosa J.C., Firmino A.C., Bergamin Filho A., Barreto S.S., RA Inoue-Nagata A.K., Rezende J.A.M.; RT ; RL Submitted (07-AUG-2007) to the INSDC. RL Centro APTA Citros, IAC, Rod. Anhanguera km 158, Cordeiropolis, SP RL 13490-970, Brazil XX RN [3] RC Sequence update by submitter RP 1-2590 RA Barbosa J.C., Firmino A.C., Bergamin Filho A., Barreto S.S., RA Inoue-Nagata A.K., Rezende J.A.M.; RT ; RL Submitted (04-MAY-2009) to the INSDC. RL Departamento de Entomologia, Fitopatologia e Zoologia Agricola, ESALQ, RL Universidade de Sao Paulo, Piracicaba, SP 13418-900, Brazil XX DR MD5; b79ef5c1861ea19e2e55fb772f71a6f8. XX CC On May 12, 2009 this sequence version replaced gi:155733240. XX FH Key Location/Qualifiers FH FT source 1..2590 FT /organism="Tomato severe rugose virus" FT /segment="DNA-A" FT /host="Nicandra physaloides" FT /strain="Sumare" FT /mol_type="genomic DNA" FT /country="Brazil:Sao Paulo State, Sumare" FT /collection_date="Feb-2007" FT /db_xref="taxon:158463" FT misc_feature 1..167 FT /note="intergenic spacer; contains the rep-origin common FT region; RC" FT gene 168..923 FT /gene="AV1" FT CDS 168..923 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:A7UMY2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A7UMY2" FT /protein_id="ABU39853.2" FT /translation="MPKRDAPWRLTAGTSKVSRSVNFSPRAGYGPKYNKAAEWVNRPMY FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDESIKLKNHTNSVMFWLVRDRRPYSTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNNVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT gene complement(920..1318) FT /gene="AC3" FT CDS complement(920..1318) FT /codon_start=1 FT /gene="AC3" FT /product="enhancer protein" FT /note="Ren" FT /db_xref="GOA:C4MDQ1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C4MDQ1" FT /protein_id="ACQ91619.1" FT /translation="MDSRTGELITARQAENGVYIWEISNPLYFKINRVEDPMYTASRVY FT HVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLSRFKYLVLLYLDRLGVISINN FT VIRAVRFATDKSYVNAVLENHSIKFKFY" FT gene complement(1065..1454) FT /gene="AC2" FT CDS complement(1065..1454) FT /codon_start=1 FT /gene="AC2" FT /product="Trap" FT /note="transactivator protein" FT /db_xref="GOA:C1KG77" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C1KG77" FT /protein_id="ACQ91620.1" FT /translation="MRNSSSLTPPSIKVQHRAAKKRGIRRRRIDIECGCSIYVHIDCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHREQSLPRPNTVQPQPEESI FT ASPQELPQLPDMDDFTDSFWDDIFK" FT gene complement(1396..2454) FT /gene="AC1" FT CDS complement(1396..2454) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /note="Rep" FT /db_xref="GOA:C4MDQ3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C4MDQ3" FT /protein_id="ACQ91621.1" FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKTLNTPTNKKFI FT KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKDVALQIIREKLPEKFLFQF FT HNLNSNLDRIFTRAPEPWAPTFPLSSFTSVPREMQAWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGTHNYLSGHLDFNPRVYSNHVEYNVIDDIAPHYLKLKHWKELLGA FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENASLNNWTKHNAKFVFL FT NTPLYQGTTQSC" FT gene complement(2037..2300) FT /gene="AC4" FT CDS complement(2037..2300) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C4MDQ4" FT /protein_id="ACQ91622.1" FT /translation="MKMGSLISTCFFNLRATTAAKINDSSTWSPQQGQHISIRTFRELS FT HRPTSNHMSTKTEILSSGGNSKSTEEVLEAVARQLTTLPQKP" FT misc_feature 2454..2590 FT /note="intergenic spacer" XX SQ Sequence 2590 BP; 664 A; 526 C; 602 G; 798 T; 0 other; accggatggg cgcgcgattt tcacttttta gtttcaatta aagtaaagtg attgtctgtg 60 gcccaatcat attggcctgt cgagcttaga tatttgtaac aacttaaggc ccaagtggtt 120 aaacggctat aaatggaaca tacactttac ttttgtttta attcaaaatg cctaagcgtg 180 atgccccatg gcgtttaacg gcgggaactt caaaggtttc ccgctctgtc aatttttctc 240 cccgtgcagg atatggaccc aaatataaca aggccgctga gtgggtgaac aggcccatgt 300 acaggaagcc caggatctac cgtactttga gaggcccaga tgttcctaga ggctgtgaag 360 ggccttgtaa ggttcagtct tacgagtctc gtcatgatgt ttcccatgtc gggaaggtga 420 tttgtgtgtc tgacgttaca cgtggtaacg gtattactca ccgtgttggt aagcgtttct 480 gcgtgaagtc tgtatatatt ttagggaagg tatggatgga cgagagcatc aagttgaaga 540 atcacacaaa tagtgtgatg ttctggttgg ttagagatcg gagaccttat tcgacaccta 600 tggattttgg ccaggtgttc aacatgtttg acaacgagcc tagcactgca actgttaaga 660 acgatcttcg ggatcgtttt caggtcatgc acaagtttta tgccaaggtt actggtggac 720 agtatgccag taatgagcag gcattagtga agcgcttttg gaaggtcaac aacaacgtag 780 tctacaacca tcaggaggca gggaaatacg agaatcatac tgagaacgcc ttgctattgt 840 atatggcatg tactcatgcc tctaaccccg tgtatgctac attgaaaatt cggatctatt 900 tttatgattc gattactaat taataaaatt taaattttat tgaatgattt tcgagtacag 960 catttacata tgatttgtct gttgcgaaac gaacagctct gattacatta ttaatggaaa 1020 taacgcctaa acgatctaga tacaataaga ctaaatattt aaatctactt aaatatgtcg 1080 tcccagaagc tgtcagtgaa gtcgtccata tctggaagtt gaggaagctc ttgtggagat 1140 gcaatgctct cctcaggttg tggttgaacc gtatttggac gtggtagact ctgctcgcgg 1200 tgtacattgg atcctccact ctgtttatct tgaaatagag gggatttgat atctcccaaa 1260 tatagacgcc attctctgcc tgacgtgcag tgatgagttc ccctgtgcgt gaatccatgt 1320 cctctgcagt cgatgtgtac gtaaatagag cacccgcact ctatatcaat tcgtcgtctc 1380 ctgatgcctc gttttttagc agctctgtgt tgtaccttga tagagggggg tgttaaggaa 1440 gacgaatttc gcattgtgct ttgtccaatt attaagactt gcattttctt ctttgtcgag 1500 gaaacattta tagctggccc cctcgccagg attgcaaagc acgatgcatg ggataccacc 1560 tttaatttga actggctttc cgtatttgca gtttgattgc caatcctttt gggccccaag 1620 caattctttc cagtgcttta actttagata gtgcggtgcg atgtcatcaa tgacgttata 1680 ttcaacatga tttgaataaa ccctaggatt gaaatctagg tgtccactca aataattatg 1740 ggtccctaat gcacgtgccc acatcgtctt tcccgttcga gaatcacctt caatgatgat 1800 actaataggt cgttccggcc gcgcagcggc acctctccca aaatagtcat ctgcccaagc 1860 ttgcatctct ctcggtacgc tagtgaaaga ggagagggga aacgtagggg cccatggctc 1920 cggagccctt gtaaatatcc tatctaaatt actatttaga ttgtgaaact gaaataagaa 1980 cttttcaggc agcttctcac ggattatctg caaggcgacg tctttggaag gtgcgttcaa 2040 ggcttctgcg gcagcgtcgt tagctgtctg gcaaccgcct ctagcacttc ttccgtcgat 2100 ttggaattcc ccccactcga tagtatctcc gtctttgtcg acatatgatt tgacgtcgga 2160 cgatgactta gctctctgaa tgttcggatg gaaatgtgtt gaccttgttg gggagaccag 2220 gtcgaagaat cgttgatttt ggcagcagta gttgccctca aattgaagaa gcacgtggag 2280 atgaggctcc ccattttcat ggagctctct gcaaaccttg atgaactttt tatttgtagg 2340 agtgtttagg gtttttaatt gggaaagtgc ttcttctttc gataatgagc atttgggata 2400 tgtgaggaaa taattcttcg cttttatttg aaagcgcttt ggagctgatg gcatatttgt 2460 aaatatgaca cttactacca attggtagct gctctaaaac tcatatgaat tggtagttat 2520 ggtagctctt atatagtaga agttccttct aaagagattg ccacacgtgg cggccatccg 2580 ttataatatt 2590 //