ID EU085423; SV 2; linear; genomic DNA; STD; VRL; 2776 BP. XX AC EU085423; XX DT 28-AUG-2007 (Rel. 93, Created) DT 16-DEC-2008 (Rel. 98, Last updated, Version 2) XX DE Tomato yellow leaf curl virus strain TYLCV-Ir2, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2776 RA Azizi A., Mozafari J., Shams-bakhsh M.; RT "A new strain of tomato yellow leaf curl virus from Iran"; RL Unpublished. XX RN [2] RP 1-2776 RA Azizi A., Mozafari J., Shams-bakhsh M.; RT ; RL Submitted (07-AUG-2007) to the INSDC. RL Plant Genetics & National Plant Gene-Bank, Seed & Plant Improvement RL Institute (SPII), Mahdasht Road, Karaj, Tehran 31585-4119, Iran XX RN [3] RC Sequence update by submitter RP 1-2776 RA Azizi A., Mozafari J., Shams-bakhsh M.; RT ; RL Submitted (26-NOV-2008) to the INSDC. RL Plant Genetics & National Plant Gene-Bank, Seed & Plant Improvement RL Institute (SPII), Mahdasht Road, Karaj, Tehran 31585-4119, Iran XX DR MD5; d197fa2c9dcd95a380cd9b8ab518893e. DR EuropePMC; PMC4531504; 26260162. DR EuropePMC; PMC5904752; 29530481. XX CC On Dec 1, 2008 this sequence version replaced gi:156186311. XX FH Key Location/Qualifiers FH FT source 1..2776 FT /organism="Tomato yellow leaf curl virus" FT /host="tomato" FT /strain="TYLCV-Ir2" FT /mol_type="genomic DNA" FT /country="Iran:Bandar-Abbas" FT /PCR_primers="fwd_seq: cgcccgtctcgaaggttc, rev_seq: FT gccatatacaataacaaggc" FT /PCR_primers="fwd_seq: ggaacaggcattagttaagag, rev_seq: FT ggacaactaaccaattatctaac" FT /PCR_primers="fwd_seq: gtcttcgctatgcggtgttgg, rev_seq: FT tgtttatgccttggacaatgg" FT /db_xref="taxon:10832" FT CDS 129..479 FT /codon_start=1 FT /product="V2" FT /note="pre-coat protein" FT /db_xref="GOA:B4YT03" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B4YT03" FT /protein_id="ACJ66289.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPLQQPCCCPHCPRHKQAPIMDVQAHV FT PKAQNIQNVSKP" FT CDS 289..1065 FT /codon_start=1 FT /product="V1" FT /note="coat protein" FT /db_xref="GOA:A7UMR0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A7UMR0" FT /protein_id="ABU55423.2" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGINKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVIFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1062..1466) FT /codon_start=1 FT /product="C3" FT /db_xref="GOA:A7UMR1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A7UMR1" FT /protein_id="ABU55424.2" FT /translation="MDSRTGELITAHQAQNGVFIWEIENPLYFKITNHDERPFLMSHDI FT ISIQIRFNHNIRKVLGIHKCYLNFQIWTTLRPQTGHFLRVFKYQVFKYLVNIGVISINN FT VIRAVDHVLYDVLENTLNVTENHDIKYKFY" FT CDS complement(1207..1614) FT /codon_start=1 FT /product="C2" FT /db_xref="GOA:B7SAY2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B7SAY2" FT /protein_id="ACJ66290.1" FT /translation="MQPLSPSTSHCFQVPIKIQHRIAKTKPVRRKRIDLDCGCSYYLHI FT NCINHGFTHRGTHHCSSSPEWRFYMGDRKSPVFQDHQPRREAISNEPRHHFNTDKIQSQ FT HQEGTGDSQMLSQLPNLDDLTASDWSFLKSI" FT CDS complement(1538..2614) FT /codon_start=1 FT /product="C1" FT /note="replication-associated protein" FT /db_xref="GOA:B7SAY3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B7SAY3" FT /protein_id="ACJ66291.1" FT /translation="MAPPKRFQINCQNYFLTYPKCSLTKEEALSQLQNLPTPTKKNNKL FT KNHPSLQGTSRNGEPHLHVLIQFEGKFKCQNQRFFDLVSPSRAAHFHPNIQGAKSSSDV FT KSYIDKEGDTLDWGEFQIDGRSARGGQQSANDAYAAAINSGSKAEALRVLRELAPRDYI FT LQFHNLNSNLDRIFQEPPAPYISPFLSSSFNQVPEELEMWVSENVMSSAARPWRPRSII FT IEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGA FT QRDWQSNTKYGKPIQIKGGIPTIFLCNPGPSSSYREYLDEEKNISLKNWALKNATFVTL FT YEPLFSSTNQNPTPHSED" FT CDS complement(2143..2445) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B7SAY4" FT /protein_id="ACJ66292.1" FT /translation="MGSHISMCLSNSRGNSSAKIRDSSTWYPQAGQHISIQTFRELNPV FT QTSSLTSTRRETPLTGESFRSMEGLQEGANNLQTTLTPQQLTLEVRQRLLEFLGN" XX SQ Sequence 2776 BP; 758 A; 539 C; 615 G; 864 T; 0 other; accggatggc cgcgccccac gtgggtcccg cacacgtcgc tattgtccaa tcaaattgat 60 gactgaaacg ttagataatt ggttagttgt ccttataaac ttagtcccca agtttgttgt 120 cgtgcaatat gtgggatcca cttcttaatg aatttccgga atccgttcac ggatttcgtt 180 gtatgttagc tattaaatat ttgcaggccg ttgaggaaac gtatgagccc aacactttgg 240 gccacgattt aattagggat cttatatctg ttgtaagggc tcgtgactat gtcgaagcga 300 cccggcgata taatcatttc cacgcccgtc tcgaaggttc gccgaaggct gaacttcgac 360 agcccctaca gcagccgtgc tgctgccccc attgtccaag gcataaacaa gcgccgatca 420 tggacgtaca ggcccatgta ccgaaagccc agaatataca gaatgtatcg aagccctgat 480 gttccccgtg gatgtgaagg cccatgtaaa gtccagtctt atgagcaacg ggatgatatt 540 aagcatacag gtattgttcg ttgtgttagt gatgttactc gtggatccgg aattacccac 600 agagtgggta agaggttctg tgttaaatcc atatattttt taggtaaagt ttggatggat 660 gaaaatatta agaagcagaa tcacactaat caggtcatat tcttcttggt ccgtgataga 720 aggccctatg gaaacagccc aatggatttt gggcaggttt ttaatatgtt cgataatgag 780 cctagtaccg caaccgtgaa gaatgatctc cgggataggt ttcaagtgat gaggaaattt 840 catgctacag ttattggtgg gccctctgga atgaaggaac aggcattagt taagagattt 900 tttaaaatta acagtcatgt aacttataat catcaagagg cagccaagta tgagaaccat 960 actgaaaacg ccttgttatt gtatatggca tgtacgcatg cctctaatcc agtgtatgca 1020 actatgaaaa tacgtatcta tttctatgat tcaatatcaa attaataaaa tttatatttt 1080 atatcatgat tttctgttac atttagtgtg ttttcgagta catcatacaa tacatgatca 1140 actgctctga ttacattgtt aatggaaatt acacctatat taactaaata tttaaaaact 1200 tgatatttaa atactcttaa gaaatgacca gtctgaggcc gtaaggtcgt ccagatttgg 1260 aagttgagat aacatttgtg aatccccagt accttcctga tgttgtgatt gaatcttatc 1320 tgtattgaaa tgatgtcgtg gctcattaga aatggcctct cgtcgtggtt ggtgatcttg 1380 aaatacaggg gattttctat ctcccatata aaaacgccat tctgggcttg atgagcagtg 1440 atgagttccc cggtgcgtga atccatgatt gatgcagttg atgtggaggt aatatgagca 1500 tccgcagtcg aggtctatgc gcttacgtct gactggttta gtcttcgcta tgcggtgttg 1560 gattttgatt ggtacttgaa aacagtggct cgtagagggt gacaaaggtt gcattcttga 1620 gagcccaatt ttttaaggat atgttttttt cttcgtctag atattcccta tatgatgagc 1680 taggtcctgg attgcagagg aagatagtgg gaattccccc tttaatttga atgggtttcc 1740 cgtattttgt gttgctttgc cagtccctct gggcccccat gaattccttg aagtgcttta 1800 aataatgcgg gtctacgtca tcaatgacgt tataccacgc atcattactg tatacctttg 1860 gacttaggtc tagatgtcca cataaataat tatgtgggcc tagagacctg gcccacattg 1920 ttttgccggt tctgctatca ccctcgatga taatactcct aggtctccat ggccgcgcag 1980 cggaagacat gacgttctcc gacacccaca tttcaagttc ctctggaact tgattaaaag 2040 aagaagataa aaatggagaa atataaggag ccggaggctc ctgaaaaatc ctatctaaat 2100 tactatttaa attatgaaat tgcaaaatat aatctctggg ggctaattcc ctaagaactc 2160 taagagcctc tgccttactt ccagagttaa ttgctgcggc gtaagcgtcg tttgcagatt 2220 gttggccccc tcttgcagac cttccatcga tctgaaactc tccccagtca agggtgtctc 2280 cctccttgtc gatgtaagac ttgacgtctg aactggattt agctccctga atgtttggat 2340 ggaaatgtgc tgccctgctt ggggatacca agtcgaagaa tctctgattt tggcacttga 2400 atttcccctc gaattggata agcacatgga gatgtggctc cccatttcgg gaagttccct 2460 gcaaacttgg atgatttttc aatttgttat ttttttttgt tggggtaggt aggttttgta 2520 attgggaaag tgcctcttct ttggttaatg agcacttagg atatgtgagg aaataatttt 2580 ggcaatttat ttggaaacgc ttaggaggag ccatatggtc aatgagtacc gattgaccaa 2640 gaatttcaac ttatccctag tatatcggta ctcaatatat agtgagtgcc aaatggcata 2700 ttggtaattt cgtaaaagca tttttaaaag taaaattcaa aaatcaaaat cctaaagcgg 2760 ccatccgtat aatatt 2776 //