ID EU082131; SV 1; linear; genomic RNA; STD; VRL; 5077 BP. XX AC EU082131; XX DT 28-AUG-2007 (Rel. 93, Created) DT 21-FEB-2008 (Rel. 94, Last updated, Version 2) XX DE Black raspberry virus F, complete genome. XX KW . XX OS Black raspberry virus F OC Viruses; Riboviria; Totiviridae; Totivirus. XX RN [1] RP 1-5077 RA Tzanetakis I.E., Halgren A., Martin R.R.; RT "Black raspberry fungal virus"; RL Unpublished. XX RN [2] RP 1-5077 RA Tzanetakis I.E., Halgren A.; RT ; RL Submitted (05-AUG-2007) to the INSDC. RL Botany and Plant Pathology, Oregon State University and USDA-ARS, 3420 RL Orchard Ave, Corvallis, OR 97330, USA XX DR MD5; c399492892f38d844a9327caa39a5909. XX FH Key Location/Qualifiers FH FT source 1..5077 FT /organism="Black raspberry virus F" FT /host="black raspberry NCRG CRUB 9013" FT /isolate="CRUB 9013" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:463392" FT CDS 109..2418 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:A7XMH5" FT /db_xref="InterPro:IPR015302" FT /db_xref="InterPro:IPR036332" FT /db_xref="UniProtKB/TrEMBL:A7XMH5" FT /protein_id="ABU55398.1" FT /translation="MDAFLKKFFEGFEAPGAEFSFNASPARIYTFFQSLLRVDCDGVIQ FT NRPFYVNQPMTPLGKMTARFGSTVSTLDGISKPYLTPEGVINLNAIGDVLKSTGGMTSN FT AWSLHMGVVKGWNWADNHVPLLVNMLRYTLIKHIQTVAGTLDATLGTYDDGHVTINSDG FT CFTEAYPEEAAWDGWPFAVPEGQAAIEAWTQFTRFETAEPQANDVCLDLRNLTPQESAF FT VLLMCTQWQRKSRLRLDFALPELAHAISYRASAEPAGFAGWLSGTYVAAQGPPAAPGPE FT LAWSALKKYVNQNRLYDHFSTALYLVACSMYQFAPVTAEAHSWLDVDWDLSLPLFHSVR FT GRYTFLNEDEAAFISHRALNEWSYYSVNINRINLLALTFSQAYHTGFAVRNVRKSITGK FT LDDIYTTEGELLAPISMIPSAASEAVRAPVPLSGMSGVYMYTQYNLLDYDPNRTITLEN FT DYTGEDDGYDLIEPEVTTRTEVTVRAGVDLNALLLGGPPAAGTRGGNNAAARGRGLGRG FT GRNGGRGNGSTSAEAEDGDENLTIDNFDPNDYFEVVEIEEPAGPTTLRVPWMTFPGYPT FT MLVPIDPFPDVNIFTLKGKIDGTTGDCTRWGFKTTAMRAWYVANLYRLCGYDLDFSSAQ FT NLVGGEKFYAPNNVGFVWPILYEPNHQHDEIVINYQQQRMHHFITLPQIINNFFKNKTI FT EFSHRIIRRGTTTSAYGNWLDVVESSGVVQMFANMTVAYNTSAAVSRLRAYITRSEEGF FT RFVDNVQGGAIPPPTE" FT CDS 2565..5009 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="RdRp" FT /db_xref="GOA:A7XMH8" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:A7XMH8" FT /protein_id="ABU55399.1" FT /translation="MNIPVWVTIRGECLTAVDREKAKYVLAHVSYSNTQDSPGFGMFRV FT GKECVKGFMARCEDIWVYYVKTSTPAISLPPVVKRTMSAMYSGVEDYDFSDFRGHRFLR FT RKFGVVREEIIHAKNIKPPQKGEFEKSKITGEHHTHYTPDEVWEIAVQTNTMRRALLLV FT VDKLREISGVTEAIVSTFMAYIMFAKPQVAYLLATSANIWRAKDVNTLAEKLKEISTPL FT KSMHRHDVLDMTQLFELQVLVNRGIGKVDWVNERKHRQKPDTVKVGFTDVYCEARRLFE FT LGVQRGFKYPTMDFDKYLKSRWEWVPTGSVHSQYEGDQEYIAKDYRHRSKFVTLNRLSC FT DQIREMFNRKPEIQAWASVKYEWAKQRAIYGVDLTSSVITNYAMFRCEDVLRHHFPIGS FT EADAQRVHKRLTYMLKDTESFCYDFDDFNAQHSIESMEAVLLAYYDQFKDQMTAAQASA FT MEWVCQSVKEMIVNNNEVQPPEKYKLKGTLLSGWRLTTFMNTVLNYIYFRISGALKTPD FT VVDSVHNGDDVLLSINNLKAAVEVDSRMAKIGARAQAAKCNVFSIGEFLRVDHKISREK FT GVGAQYLSRAAATLVHSRIESQAPLRLIEAVKAAYTRASEVAMRSDQSSEISALFFHKA FT AKRLSSIFGVDYEKVRIAANQHVVTGGIRQDFMASVEYLIHEEVEREKLGTDSLHNLGQ FT VDVSDLGEGIKDYGSVLMSQYGKYTTEERIYKSIVSATGRQLSITRSTRLSVVDVRHDT FT KYGYGRALYGYLRNLVNLPYVEKARFVGISPLAMLDAKGMGTLRKYIMGASDVDYTLRV FT LL" XX SQ Sequence 5077 BP; 1516 A; 973 C; 1336 G; 1252 T; 0 other; gaagttttca aagcaatata taccctcaca gcttttaaaa cttcttttta ctgctttcga 60 taaagaactc tctcgcctta tctctttcta cttattaatt tagctatcat ggacgctttt 120 cttaaaaagt tttttgaagg ttttgaggca cccggagctg agttcagctt caatgcctct 180 cctgcaagga tttacacttt tttccaatct ttgttaaggg ttgactgtga cggagtcatc 240 cagaacaggc ccttctatgt caatcaacct atgacccctc tgggcaagat gactgccagg 300 tttggatcta ccgtctctac tcttgacgga atctctaagc cgtatttaac tcctgaaggc 360 gtgataaacc tgaacgcaat aggcgatgtt ttgaagtcga ctggcggaat gacatctaac 420 gcctggtctt tacacatggg agttgtgaaa gggtggaact gggctgacaa ccatgttccg 480 ctgctggtca acatgctgcg atatactctt atcaagcaca tccagactgt tgcagggaca 540 cttgatgcta cgctcgggac gtatgatgac ggtcacgtca cgatcaacag tgatggatgc 600 tttactgaag cgtatccaga ggaggctgct tgggatggat ggccgtttgc agtacctgag 660 gggcaagctg cgatagaagc atggactcag tttactcgtt tcgaaacagc tgagcctcag 720 gcaaatgatg tttgccttga tctacgaaac ttgacacctc aggagagtgc atttgttttg 780 ctgatgtgca ctcagtggca gaggaagagc aggctgaggc tcgactttgc cctacccgag 840 ctggcacatg ccataagcta ccgggcgtct gctgaaccgg ctggatttgc tggttggctg 900 tctggtactt acgtagccgc tcaggggcca cctgcggcgc cggggcctga gttagcctgg 960 tctgcgctta aaaaatacgt taatcagaac agattatacg atcacttttc aacggcgctg 1020 tatcttgtgg catgctctat gtatcaattt gcgccggtta ccgccgaggc ccactcgtgg 1080 ctagacgttg actgggatct atcactacct cttttccact cagtaagagg taggtatact 1140 ttcctcaatg aagatgaagc tgcgttcata agtcataggg ctctgaacga atggtcatac 1200 tacagtgtca acattaatag aataaatctg ttggcactca ctttttcgca agcatatcac 1260 acaggatttg cagtgcggaa cgtgcgcaag tcgataactg gaaagctaga tgatatttac 1320 acgacagagg gagaacttct ggccccaatc agtatgatac catctgcggc ctcagaagct 1380 gtacgcgcac ctgtcccgct gtcggggatg tctggggtgt acatgtacac tcaatacaat 1440 ttgttggact acgacccaaa cagaacaata acactagaaa atgactacac tggggaggat 1500 gatggatatg atctcatcga gccagaggtc actactagga cagaggtgac tgtgagggcg 1560 ggggttgatt tgaatgctct gctactggga ggaccgccgg cggcaggtac gagaggcgga 1620 aacaacgcag ccgcccgagg aagagggtta ggcagaggcg gcagaaacgg aggccgtggg 1680 aatggtagca catcggccga agcagaggat ggagatgaga acttgaccat tgataacttt 1740 gacccgaatg actactttga agtagttgag atagaagaac ctgctggacc gacaacttta 1800 agggtaccat ggatgacatt tcctggatat ccaacgatgt tggtgcctat tgacccgttc 1860 ccggatgtga atatattcac attgaaggga aagatagacg gtacaacggg tgattgtact 1920 aggtggggat ttaagacgac tgccatgcga gcgtggtatg ttgcaaactt gtacagatta 1980 tgtggatacg acttagattt ttcgtctgct cagaatctgg ttgggggaga gaagttttat 2040 gcccccaaca atgtaggttt tgtctggcct atattgtatg agccaaatca ccaacatgac 2100 gagatagtaa ttaactacca gcagcagagg atgcatcact tcatcacgct gccgcagata 2160 ataaataatt tctttaaaaa taagacgatt gagttcagtc accgaataat cagaagaggg 2220 acaaccacaa gtgcctacgg taactggctg gatgtggttg agtcgtctgg cgtcgtacag 2280 atgtttgcga acatgacggt tgcctacaac acaagcgcgg ctgtctcgcg gctaagagca 2340 tacataacca gatcggagga gggttttcgg tttgtagaca atgttcaggg tggagcaatc 2400 cctcctccga cggagtgaca aactgcccaa gatgctggcg agtgttgggc aagtggtttg 2460 atgaggcgct gaataaatac gagggagaag agatacaaat aatcaatgta ggactaaata 2520 aagaaaaatc gataaaaatt aaaaagaaag agactttgaa taaaatgaat atacctgtgt 2580 gggtgacaat aaggggagaa tgtttgactg cagttgacag agaaaaagcg aaatatgtat 2640 tggctcatgt tagttacagc aacacacaag actcaccggg gttcggaatg tttagagtag 2700 gaaaggagtg cgtaaaagga tttatggcta ggtgcgaaga catatgggtg tattatgtaa 2760 aaacgagcac cccagcaata tcactgccac ctgtcgtgaa gagaacgatg tcggctatgt 2820 attcaggggt ggaagattat gatttcagtg acttcagggg gcatagattc ttgagaagga 2880 agttcggtgt ggttagagag gaaataattc acgcgaagaa cataaagccg ccacaaaaag 2940 gagagtttga gaagtccaag ataactggag agcatcacac gcattacacg cccgatgaag 3000 tatgggaaat agcagtacag accaacacca tgcggagggc tttattgttg gtcgtagata 3060 agctgaggga aatatcgggg gtgactgaag caatcgtgtc gaccttcatg gcctacatca 3120 tgtttgccaa accccaggta gcttaccttc tggctacatc tgctaatatc tggcgagcaa 3180 aggacgtaaa tacactggcc gagaaactaa aggaaatatc gacgcccctc aagagtatgc 3240 acagacacga cgtgctagac atgacacaac tatttgaatt acaagtattg gtcaacagag 3300 gaataggtaa agtagactgg gtgaatgagc gtaaacacag gcagaaacca gacacagtaa 3360 aagtgggttt caccgacgtg tattgcgaag caaggaggct gtttgagcta ggtgttcaga 3420 gaggattcaa gtatcccaca atggattttg ataaatatct aaagtcgcgg tgggagtggg 3480 taccgacagg tagtgtacac tcacaatatg aaggcgacca agaatatata gcgaaagact 3540 accggcacag gtctaaattt gtaaccttaa acaggttaag ctgtgatcag ataagggaaa 3600 tgtttaatag gaagcctgaa atacaagcat gggcgagcgt gaaatatgag tgggcgaaac 3660 agagggctat atacggagta gatctaacca gttctgtgat aactaattat gctatgttta 3720 gatgtgagga cgtactcagg catcattttc caataggaag tgaggctgac gctcagaggg 3780 tacacaagag attgacatat atgctgaaag atacggagtc tttttgttat gattttgacg 3840 atttcaatgc tcagcattcg attgagtcaa tggaggctgt tttactagcg tattatgatc 3900 agtttaaaga tcaaatgaca gcagctcagg cgtcagctat ggaatgggtg tgtcagagcg 3960 taaaagagat gatagtaaac aataacgaag tacagccacc tgagaagtac aaattgaagg 4020 gaacactact ttcgggatgg cgattaacta ctttcatgaa cacagtgctg aactatattt 4080 attttagaat atctggagct ttaaaaacac cagacgtggt tgattcagtg cataacggtg 4140 atgacgtact attatctata aacaacctaa aggcagcggt tgaagtagat agtagaatgg 4200 ctaagatagg ggcgagggca caagcagcga agtgcaacgt gttctcaatc ggtgagttct 4260 tgcgcgtaga ccataagata tctagagaga agggagtcgg cgctcaatat ctgagtagag 4320 cagctgctac cctggtacat tctagaatag agagccaagc gcccctgcga ttaattgagg 4380 cggtcaaggc agcatataca agggcatctg aggtagctat gcgaagtgat cagtcatctg 4440 aaatttcagc gctattcttt cataaggccg caaagcgact gtcgagcata tttggtgtgg 4500 attatgaaaa agtaagaata gcagcaaatc agcatgtcgt gactggcggg ataaggcaag 4560 acttcatggc ttcagtagag tatttaatac atgaagaagt tgaaagagaa aaattaggaa 4620 ctgactcctt acacaatctg gggcaagtag atgttagtga cctaggagaa ggaattaagg 4680 actatgggag tgtattgatg tcacaatatg ggaaatacac aaccgaggag agaatataca 4740 aaagtatcgt gtcagccacg ggtagacagc tgtcaataac gcgcagcacg cggttgtcag 4800 ttgtcgacgt gagacacgat acgaaatatg gctatggcag ggctttatac ggctatctga 4860 gaaatctagt taatctacct tatgtagaga aggcaagatt tgtggggata tcgccgttgg 4920 ctatgctaga tgctaaaggc atgggaacat taaggaaata cataatgggc gcaagtgatg 4980 tagattatac actgcgcgta ttactttaat gttatactac tgttggaata acaacgtaga 5040 ccatgccaga attaagaggg caggtaactc tttaagc 5077 //